CmoCh15G007250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G007250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	30S ribosomal protein S13, putative
Location	Cmo_Chr15 : 3537178 .. 3538122 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAACAATACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAGTGAGTTCGTTAACGTTGCGTAATTATTTGTTGATTGCGATGCGACAAGAGTAATACGATCTAGGGCTTGTGAATCTCTGGAGTTTTGTTATTCGATTTGATTTTTGAGTTTAAAACATTTGTGCGTTGGAAGATTTTGAATGTTTGTCGATGATATGTGTAGATCGCGTCGATTCACATAAAAGCGGGTTTGGAGATTCCCGATAACAAGCCGCTCAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCGAAGTACATGGTCGGACATGAGTTGGTAAATTAGCGGCTCTCTTCACCATCTTTCTTCCCATGAATTTCAAACAGGATGTTTATTTTTTTGTGTCTGTGTTGCAGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCGTTGAAAATGGTTCTGCAATTCCTTCTCTTTTTTGCATTTGTAATGCTTCATATGCACTTGATACATCACATTTAGCATAAGACTTCAATAGCTGTTGAAATTATGAACTGGTTATTAACAAATGGTTCTGGAATTCCTCCTCTTTAGAAACGTTTAAATGCCTCAATTTGCATTTCTAC

mRNA sequence

CGAACAATACTTCGGCTCTCTCTTTCCTTCGCCGTCTGAATTCTCTCTTCCGCTTCACTGGAACCCTCCTCCGCCGAATAATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAATCGCGTCGATTCACATAAAAGCGGGTTTGGAGATTCCCGATAACAAGCCGCTCAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCGAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCGTTGAAAATGGTTCTGCAATTCCTTCTCTTTTTTGCATTTGTAATGCTTCATATGCACTTGATACATCACATTTAGCATAAGACTTCAATAGCTGTTGAAATTATGAACTGGTTATTAACAAATGGTTCTGGAATTCCTCCTCTTTAGAAACGTTTAAATGCCTCAATTTGCATTTCTAC

Coding sequence (CDS)

ATGTTCGGAGTTCGTCGTTCCCTGGGGGTTGTCTCCAATGATCTTCTTCATCGCTTCCGATCATTATCAATCGCGTCGATTCACATAAAAGCGGGTTTGGAGATTCCCGATAACAAGCCGCTCAAATATGCGCTTCAGTACATTAATGGAATTGGCCGATCGAGAGCGCCGCAAGTTCTTGCTGAGCTCCACTTGGAGAACAAGCTTGCCAAGGATTTGACTAAACGAGAGATTGTTGTTCTTGCGGACGAAATTTCGAAGTACATGGTCGGACATGAGTTGAATAAGTGTGTTAAGAAGGACATTGATAGATTGCAGGCAATTCAGTGCCACAGAGGGATTAGGCATGGTGAAGGATTGCCATGTCGAGGCCAACGAACAAAGACCAATGCTAGGACTATGAAGTCGAAGCAGATCGGTTCTGGAAAGAAGAAAGCTTCTCGTTGA

Homology

[Close]

BLAST of CmoCh15G007250 vs. Swiss-Prot
Match: RT13_SOYBN (Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.8e-33
Identity = 74/148 (50.00%), Postives = 104/148 (70.27%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHRF--RSLSIASIHIKAGL--EIPDNKPLKYALQYINGIGRSRA 60
           MFG  R L  V+  L        + + +I+I  G+  EIPDNK L YALQ ++GIGRS+A
Sbjct: 1   MFGSARILSDVTLRLRQNLSVHGVRVQNINIGGGVGGEIPDNKRLVYALQNLHGIGRSKA 60

Query: 61  PQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRH 120
             ++AEL +ENK  KDL+KRE+  + + +SKY++G++L KCV++D+ RL  IQC+RGIRH
Sbjct: 61  QHIVAELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVGRLVGIQCYRGIRH 120

Query: 121 GEGLPCRGQRTKTNARTMKSKQIGSGKK 145
            + LPCRGQRT TNART +S++  SG +
Sbjct: 121 VDSLPCRGQRTHTNARTRRSRKTFSGSR 148

[Close]

BLAST of CmoCh15G007250 vs. Swiss-Prot
Match: RR13_ARATH (30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 3.1e-32
Identity = 69/130 (53.08%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 20  RSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIV 79
           +SLSI    +  G+EIP NK ++Y+LQYI+GIGR+RA Q+L +L +ENK+ KD+ + E++
Sbjct: 41  QSLSIRCARV-GGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELI 100

Query: 80  VLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI 139
           +L DE+SKYM+  +L +     I RL+ IQC+RG+RH +GLPCRGQRTK N RT+K K+I
Sbjct: 101 ILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKI 160

Query: 140 G-SGKKKASR 149
             +GKKK S+
Sbjct: 161 AIAGKKKVSK 169

[Close]

BLAST of CmoCh15G007250 vs. Swiss-Prot
Match: RT13_ARATH (Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RPS13 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.1e-28
Identity = 73/154 (47.40%), Postives = 97/154 (62.99%), Query Frame = 1


Query: 1   MFGVRRS---LGVVSNDLLHR--FRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSR 60
           M G+RRS   L  +S  LL    F  L +  I +    E+P+NKPLK  LQ + GIGR +
Sbjct: 1   MLGLRRSATTLFDISQSLLRNVTFHGLRVQGIRV-GNAEVPNNKPLKTGLQEVYGIGRRK 60

Query: 61  APQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIR 120
           + QVL  L + NKLA+DLT +E++ L +E+ ++  G EL + V  +I RL  + C+RG R
Sbjct: 61  SHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSR 120

Query: 121 HGEGLPCRGQRTKTNARTMKSKQIG-SGKKKASR 149
           H  GLPCRGQRT TNART K K +  +GKKKA R
Sbjct: 121 HRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of CmoCh15G007250 vs. Swiss-Prot
Match: RR13_SPIOL (30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2)

HSP 1 Score: 103.2 bits (256), Expect = 2.5e-21
Identity = 54/114 (47.37%), Postives = 79/114 (69.30%), Query Frame = 1


Query: 22  LSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVL 81
           L I  I I  G+EIP++K ++Y+LQYI+GIGRSR+ Q+L +L+ +NK+ KDL++ E+++L
Sbjct: 42  LQIECIRI-GGVEIPNHKRVEYSLQYIHGIGRSRSRQILLDLNFDNKVTKDLSEEEVIIL 101

Query: 82  ADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMK 136
             E           +  +  I+RL+ I+C+RGIRH  GLP RGQRTK N RT+K
Sbjct: 102 RKE----------KRFNRVAIERLKEIRCYRGIRHKLGLPVRGQRTKNNCRTLK 144

[Close]

BLAST of CmoCh15G007250 vs. Swiss-Prot
Match: RS13_HERA2 (30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=rpsM PE=3 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-19
Identity = 56/122 (45.90%), Postives = 84/122 (68.85%), Query Frame = 1


Query: 31  AGLEIPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEISK-Y 90
           +G++IP NK ++ +L YI GIGR+ + ++LA  ++  N   KDLT+ E++ L + I + Y
Sbjct: 5   SGVDIPRNKRVEISLTYIYGIGRTTSTEILARTNINPNVRVKDLTEDEVIRLREIIDQDY 64

Query: 91  MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGS--GKKKA 149
            V  +L + V+ +I RL  I C+RGIRH +GLP RGQRTKTNART + K+  +  GKKKA
Sbjct: 65  TVEGDLRRAVQLNIKRLMDIGCYRGIRHRKGLPLRGQRTKTNARTRRGKKGAAIGGKKKA 124

[Close]

BLAST of CmoCh15G007250 vs. TrEMBL
Match: A0A0A0KMX9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381850 PE=3 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 3.0e-58
Identity = 115/146 (78.77%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVL 60
           MFGVRRSLG+VSN LL RF SLSI SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60

Query: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120

Query: 121 PCRGQRTKTNARTMKSKQIGSGKKKA 147
           PCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 146

[Close]

BLAST of CmoCh15G007250 vs. TrEMBL
Match: M5XH05_PRUPE (Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015181mg PE=3 SV=1)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-34
Identity = 72/120 (60.00%), Postives = 95/120 (79.17%), Query Frame = 1


Query: 19  FRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREI 78
           F  +    ++I+AG+EIPDNKPLK+ALQYI+GIGR+RA Q+L+EL++ NKLA DLT+RE+
Sbjct: 1   FHGVGARCLNIRAGMEIPDNKPLKFALQYIHGIGRARAAQILSELNMSNKLAMDLTRREV 60

Query: 79  VVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQ 138
           V L D +SKY++G +L   V +DI R++ IQC+RGIRH + LPCRGQRT TNART K  Q
Sbjct: 61  VALDDVLSKYVIGRDLAGLVDRDIKRMKDIQCYRGIRHVDNLPCRGQRTSTNARTRKGSQ 120

[Close]

BLAST of CmoCh15G007250 vs. TrEMBL
Match: A0A0S3T9Y8_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G113900 PE=3 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 6.3e-32
Identity = 73/146 (50.00%), Postives = 105/146 (71.92%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHR--FRSLSIASIHIKAGL--EIPDNKPLKYALQYINGIGRSRA 60
           MFG  R    ++  L     FR + + +I+I  G+  EIPDNK L+YALQ+++GIGRS+A
Sbjct: 1   MFGSARIFSDIALRLRQNLSFRGVRVQNINIGGGMGGEIPDNKRLEYALQHLHGIGRSKA 60

Query: 61  PQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRH 120
             ++ EL +ENK  KDL+KRE+  + + +SKY++G++L KCV++D+ RL  IQC+RGIRH
Sbjct: 61  HHIVCELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVVRLVGIQCYRGIRH 120

Query: 121 GEGLPCRGQRTKTNARTMKSKQIGSG 143
            + LPCRGQRT TNART +S++  SG
Sbjct: 121 VDNLPCRGQRTHTNARTRRSRKTFSG 146

[Close]

BLAST of CmoCh15G007250 vs. TrEMBL
Match: A0A0L9VLR7_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g187800 PE=3 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 8.2e-32
Identity = 73/148 (49.32%), Postives = 106/148 (71.62%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHR--FRSLSIASIHIKAGL--EIPDNKPLKYALQYINGIGRSRA 60
           MFG  R    ++  L     FR + + +I+I  G+  EIPDNK L+YALQ+++GIGRS+A
Sbjct: 88  MFGSARIFSDIALRLRQNLSFRGVRVQNINIGGGMGGEIPDNKRLEYALQHLHGIGRSKA 147

Query: 61  PQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRH 120
             ++ EL +ENK  KDL+KRE+  + + +SKY++G++L KCV++D+ RL  IQC+RGIRH
Sbjct: 148 HHIVCELGVENKFVKDLSKRELYSIRELLSKYLIGNDLKKCVERDVVRLVGIQCYRGIRH 207

Query: 121 GEGLPCRGQRTKTNARTMKSKQIGSGKK 145
            + LPCRGQRT TNART +S++  SG +
Sbjct: 208 VDNLPCRGQRTHTNARTRRSRKTFSGSR 235

[Close]

BLAST of CmoCh15G007250 vs. TrEMBL
Match: A0A0B2PIF6_GLYSO (30S ribosomal protein S13, chloroplastic OS=Glycine soja GN=glysoja_025632 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 4.1e-31
Identity = 72/154 (46.75%), Postives = 108/154 (70.13%), Query Frame = 1


Query: 4   VRRSLGVVSNDLLHR-----------FRSLSIASIHIKAGLEIPDNKPLKYALQYINGIG 63
           V  SL ++SN  L +           F+ LSI  + +  G+EIP+NK ++Y+LQYI+G+G
Sbjct: 9   VAPSLAIISNSRLSKTLSVPVLNNPKFQGLSIKCVRV-GGVEIPNNKRIEYSLQYIHGVG 68

Query: 64  RSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHR 123
           R+RA Q+L ++ ++NK+ K+LT+ E++ L DE+SKYM+  +L +    +I RL+ IQC+R
Sbjct: 69  RTRAKQILCDIQMDNKITKELTEEELITLRDEVSKYMIEGDLRRFNAVNIKRLKDIQCYR 128

Query: 124 GIRHGEGLPCRGQRTKTNARTMKSKQIG-SGKKK 146
           GIRH +GLPCRGQRTK N RT+K K++  +GKKK
Sbjct: 129 GIRHIQGLPCRGQRTKNNCRTLKGKKVAIAGKKK 161

[Close]

BLAST of CmoCh15G007250 vs. TAIR10
Match: AT5G14320.1 (AT5G14320.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 139.4 bits (350), Expect = 1.8e-33
Identity = 69/130 (53.08%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 20  RSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIV 79
           +SLSI    +  G+EIP NK ++Y+LQYI+GIGR+RA Q+L +L +ENK+ KD+ + E++
Sbjct: 41  QSLSIRCARV-GGVEIPANKRIEYSLQYIHGIGRTRARQILVDLQMENKITKDMAEEELI 100

Query: 80  VLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQI 139
           +L DE+SKYM+  +L +     I RL+ IQC+RG+RH +GLPCRGQRTK N RT+K K+I
Sbjct: 101 ILRDEVSKYMIEGDLRRFNALAIKRLKEIQCYRGVRHIQGLPCRGQRTKNNCRTLKGKKI 160

Query: 140 G-SGKKKASR 149
             +GKKK S+
Sbjct: 161 AIAGKKKVSK 169

[Close]

BLAST of CmoCh15G007250 vs. TAIR10
Match: AT1G77750.1 (AT1G77750.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 126.7 bits (317), Expect = 1.2e-29
Identity = 73/154 (47.40%), Postives = 97/154 (62.99%), Query Frame = 1


Query: 1   MFGVRRS---LGVVSNDLLHR--FRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSR 60
           M G+RRS   L  +S  LL    F  L +  I +    E+P+NKPLK  LQ + GIGR +
Sbjct: 1   MLGLRRSATTLFDISQSLLRNVTFHGLRVQGIRV-GNAEVPNNKPLKTGLQEVYGIGRRK 60

Query: 61  APQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIR 120
           + QVL  L + NKLA+DLT +E++ L +E+ ++  G EL + V  +I RL  + C+RG R
Sbjct: 61  SHQVLCHLGITNKLARDLTGKELIDLREEVGQHQHGDELRRRVGSEIQRLVEVDCYRGSR 120

Query: 121 HGEGLPCRGQRTKTNARTMKSKQIG-SGKKKASR 149
           H  GLPCRGQRT TNART K K +  +GKKKA R
Sbjct: 121 HRHGLPCRGQRTSTNARTKKGKAVAIAGKKKAPR 153

[Close]

BLAST of CmoCh15G007250 vs. TAIR10
Match: AT1G22780.1 (AT1G22780.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 35  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS------- 94
           +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 95  --------------KY--MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTN 146
                         KY  +V + L+  ++ D++RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of CmoCh15G007250 vs. TAIR10
Match: AT1G34030.1 (AT1G34030.1 Ribosomal protein S13/S18 family)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 35  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS------- 94
           +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 95  --------------KY--MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTN 146
                         KY  +V + L+  ++ D++RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of CmoCh15G007250 vs. TAIR10
Match: AT4G09800.1 (AT4G09800.1 S18 ribosomal protein)

HSP 1 Score: 48.9 bits (115), Expect = 3.1e-06
Identity = 42/135 (31.11%), Postives = 66/135 (48.89%), Query Frame = 1


Query: 35  IPDNKPLKYALQYINGIGRSRAPQVLAELHLE-NKLAKDLTKREIVVLADEIS------- 94
           +   + + +AL  I GIGR  A  V  +  ++ NK A +L+  EI  L   ++       
Sbjct: 20  VDGKQKIMFALTSIKGIGRRLANIVCKKADVDMNKRAGELSAAEIDNLMTIVANPRQFKI 79

Query: 95  --------------KY--MVGHELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTN 146
                         KY  +V + L+  ++ D++RL+ I+ HRG+RH  GL  RGQ TKT 
Sbjct: 80  PDWFLNRQKDYKDGKYSQVVSNALDMKLRDDLERLKKIRNHRGLRHYWGLRVRGQHTKTT 139

[Close]

BLAST of CmoCh15G007250 vs. NCBI nr
Match: gi|449445130|ref|XP_004140326.1| (PREDICTED: small ribosomal subunit protein S13, mitochondrial-like isoform X1 [Cucumis sativus])

HSP 1 Score: 232.6 bits (592), Expect = 4.3e-58
Identity = 115/146 (78.77%), Postives = 132/146 (90.41%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQVL 60
           MFGVRRSLG+VSN LL RF SLSI SIH+ AG+EIPD+KPLK+ALQYINGIGR+RA QVL
Sbjct: 1   MFGVRRSLGIVSNALLPRFESLSIQSIHLGAGMEIPDSKPLKFALQYINGIGRARANQVL 60

Query: 61  AELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGEGL 120
           A+LHLENKL+KDLTK+E++ LADEISKY VGHEL+KCV++DI RLQ IQCHRGIRH +GL
Sbjct: 61  AQLHLENKLSKDLTKKELIFLADEISKYTVGHELDKCVQRDIGRLQDIQCHRGIRHEQGL 120

Query: 121 PCRGQRTKTNARTMKSKQIGSGKKKA 147
           PCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 121 PCRGQRTKTNARTVKSKQTRVGKRKA 146

[Close]

BLAST of CmoCh15G007250 vs. NCBI nr
Match: gi|778702365|ref|XP_011655183.1| (PREDICTED: small ribosomal subunit protein S13, mitochondrial-like isoform X2 [Cucumis sativus])

HSP 1 Score: 186.8 bits (473), Expect = 2.7e-44
Identity = 90/114 (78.95%), Postives = 105/114 (92.11%), Query Frame = 1


Query: 33  LEIPDNKPLKYALQYINGIGRSRAPQVLAELHLENKLAKDLTKREIVVLADEISKYMVGH 92
           +EIPD+KPLK+ALQYINGIGR+RA QVLA+LHLENKL+KDLTK+E++ LADEISKY VGH
Sbjct: 1   MEIPDSKPLKFALQYINGIGRARANQVLAQLHLENKLSKDLTKKELIFLADEISKYTVGH 60

Query: 93  ELNKCVKKDIDRLQAIQCHRGIRHGEGLPCRGQRTKTNARTMKSKQIGSGKKKA 147
           EL+KCV++DI RLQ IQCHRGIRH +GLPCRGQRTKTNART+KSKQ   GK+KA
Sbjct: 61  ELDKCVQRDIGRLQDIQCHRGIRHEQGLPCRGQRTKTNARTVKSKQTRVGKRKA 114

[Close]

BLAST of CmoCh15G007250 vs. NCBI nr
Match: gi|470109072|ref|XP_004290826.1| (PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Fragaria vesca subsp. vesca])

HSP 1 Score: 164.1 bits (414), Expect = 1.9e-37
Identity = 86/147 (58.50%), Postives = 110/147 (74.83%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHR--FRSLSIASIHIKAGLEIPDNKPLKYALQYINGIGRSRAPQ 60
           MFG+R     V   LL    F  +    I IKAG++IPDNK L+YALQYI+GIG++RA  
Sbjct: 1   MFGLRAVASNVGGRLLQSLPFSGMRTQGITIKAGMDIPDNKSLEYALQYIHGIGKARARH 60

Query: 61  VLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIRHGE 120
           +L+ELH++NKLA+DLTKREIV L DE+SKY++G EL   V+KDI R+  +Q +RGIRH +
Sbjct: 61  ILSELHMDNKLARDLTKREIVALGDELSKYIIGRELVAVVEKDIRRMIDVQSYRGIRHSD 120

Query: 121 GLPCRGQRTKTNARTMKS-KQIGSGKK 145
           GLPCRGQRTKTNART K+ K+I SG +
Sbjct: 121 GLPCRGQRTKTNARTRKAGKRIPSGAR 147

[Close]

BLAST of CmoCh15G007250 vs. NCBI nr
Match: gi|694419867|ref|XP_009337869.1| (PREDICTED: small ribosomal subunit protein S13, mitochondrial [Pyrus x bretschneideri])

HSP 1 Score: 162.5 bits (410), Expect = 5.5e-37
Identity = 81/141 (57.45%), Postives = 106/141 (75.18%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHRFRSLSIASIH-----IKAGLEIPDNKPLKYALQYINGIGRSR 60
           M G+R S+  VS+      +S+S   +H     IKAG+EIPDNKPLKYALQYI GIGR+R
Sbjct: 2   MLGLRGSIATVSDASRRLLQSVSFHGVHVQCLNIKAGMEIPDNKPLKYALQYIRGIGRAR 61

Query: 61  APQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIR 120
           A  +++EL++ NK AKDLT+RE+V + DEISKY+VG EL   V++DI R++ IQC++GIR
Sbjct: 62  AGLIISELNMTNKRAKDLTRREVVAIGDEISKYLVGRELATIVERDIKRMKDIQCYKGIR 121

Query: 121 HGEGLPCRGQRTKTNARTMKS 137
           H + LPCRGQRT TNART K+
Sbjct: 122 HIDKLPCRGQRTSTNARTRKA 142

[Close]

BLAST of CmoCh15G007250 vs. NCBI nr
Match: gi|645256356|ref|XP_008233914.1| (PREDICTED: small ribosomal subunit protein S13, mitochondrial [Prunus mume])

HSP 1 Score: 157.9 bits (398), Expect = 1.4e-35
Identity = 78/143 (54.55%), Postives = 106/143 (74.13%), Query Frame = 1


Query: 1   MFGVRRSLGVVSNDLLHRFRSLSIASI-----HIKAGLEIPDNKPLKYALQYINGIGRSR 60
           MFG+R ++ + S       +S+S   +     +I+AG+EIPDNKPLK+ALQYI+GIGR+R
Sbjct: 1   MFGLRGTVAIASYASRRLLQSVSFHGVGARCLNIRAGMEIPDNKPLKFALQYIHGIGRAR 60

Query: 61  APQVLAELHLENKLAKDLTKREIVVLADEISKYMVGHELNKCVKKDIDRLQAIQCHRGIR 120
           A Q+L+EL++ NKLA DLT+RE+V L D +SKY++G +L   V +DI R++ IQC+RGIR
Sbjct: 61  AAQILSELNMSNKLAMDLTRREVVALDDVLSKYVIGRDLAGLVDRDIKRMKDIQCYRGIR 120

Query: 121 HGEGLPCRGQRTKTNARTMKSKQ 139
           H + LPCRGQRT TNART K  Q
Sbjct: 121 HVDNLPCRGQRTSTNARTRKGSQ 143

The following BLAST results are available for this feature:

BLAST of CmoCh15G007250 vs. Swiss-Prot


Match Name	E-value	Identity	Description
RT13_SOYBN	4.8e-33	50.00	Small ribosomal subunit protein S13, mitochondrial OS=Glycine max GN=RSP13 PE=3 ...	[more]
RR13_ARATH	3.1e-32	53.08	30S ribosomal protein S13, chloroplastic OS=Arabidopsis thaliana GN=RPS13 PE=2 S...	[more]
RT13_ARATH	2.1e-28	47.40	Small ribosomal subunit protein S13, mitochondrial OS=Arabidopsis thaliana GN=RP...	[more]
RR13_SPIOL	2.5e-21	47.37	30S ribosomal protein S13, chloroplastic OS=Spinacia oleracea GN=RPS13 PE=1 SV=2	[more]
RS13_HERA2	1.8e-19	45.90	30S ribosomal protein S13 OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM ...	[more]

BLAST of CmoCh15G007250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KMX9_CUCSA	3.0e-58	78.77	Uncharacterized protein OS=Cucumis sativus GN=Csa_5G381850 PE=3 SV=1	[more]
M5XH05_PRUPE	1.4e-34	60.00	Uncharacterized protein (Fragment) OS=Prunus persica GN=PRUPE_ppa015181mg PE=3 S...	[more]
A0A0S3T9Y8_PHAAN	6.3e-32	50.00	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G113900 PE=...	[more]
A0A0L9VLR7_PHAAN	8.2e-32	49.32	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g187800 PE=3 SV=1	[more]
A0A0B2PIF6_GLYSO	4.1e-31	46.75	30S ribosomal protein S13, chloroplastic OS=Glycine soja GN=glysoja_025632 PE=3 ...	[more]

BLAST of CmoCh15G007250 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G14320.1	1.8e-33	53.08	Ribosomal protein S13/S18 family	[more]
AT1G77750.1	1.2e-29	47.40	Ribosomal protein S13/S18 family	[more]
AT1G22780.1	3.1e-06	31.11	Ribosomal protein S13/S18 family	[more]
AT1G34030.1	3.1e-06	31.11	Ribosomal protein S13/S18 family	[more]
AT4G09800.1	3.1e-06	31.11	S18 ribosomal protein	[more]

BLAST of CmoCh15G007250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449445130\|ref\|XP_004140326.1\|	4.3e-58	78.77	PREDICTED: small ribosomal subunit protein S13, mitochondrial-like isoform X1 [C...	[more]
gi\|778702365\|ref\|XP_011655183.1\|	2.7e-44	78.95	PREDICTED: small ribosomal subunit protein S13, mitochondrial-like isoform X2 [C...	[more]
gi\|470109072\|ref\|XP_004290826.1\|	1.9e-37	58.50	PREDICTED: small ribosomal subunit protein S13, mitochondrial-like [Fragaria ves...	[more]
gi\|694419867\|ref\|XP_009337869.1\|	5.5e-37	57.45	PREDICTED: small ribosomal subunit protein S13, mitochondrial [Pyrus x bretschne...	[more]
gi\|645256356\|ref\|XP_008233914.1\|	1.4e-35	54.55	PREDICTED: small ribosomal subunit protein S13, mitochondrial [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001892	Ribosomal_S13
IPR010979	Ribosomal_S13-like_H2TH
IPR018269	Ribosomal_S13_CS
IPR027437	30s_Rbsml_prot_S13_C

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome
GO:0003676	nucleic acid binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042254	ribosome biogenesis
biological_process	GO:0006412	translation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005840	ribosome
cellular_component	GO:0005622	intracellular
molecular_function	GO:0003723	RNA binding
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G007250.1	CmoCh15G007250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001892	Ribosomal protein S13	HAMAP	MF_01315	Ribosomal_S13_S18	coord: 21..144 score: 21
IPR001892	Ribosomal protein S13	PFAM	PF00416	Ribosomal_S13	coord: 32..133 score: 2.5
IPR001892	Ribosomal protein S13	PROFILE	PS50159	RIBOSOMAL_S13_2	coord: 31..136 score: 3
IPR010979	Ribosomal protein S13-like, H2TH	unknown	SSF46946	S13-like H2TH domain	coord: 32..136 score: 2.06
IPR018269	Ribosomal protein S13, conserved site	PROSITE	PS00646	RIBOSOMAL_S13_1	coord: 112..125 scor
IPR027437	30s ribosomal protein S13, C-terminal	GENE3D	G3DSA:4.10.910.10		coord: 98..145 score: 4.9
None	No IPR available	GENE3D	G3DSA:1.10.8.50		coord: 31..94 score: 4.2
None	No IPR available	PANTHER	PTHR10871	30S RIBOSOMAL PROTEIN S13/40S RIBOSOMAL PROTEIN S18	coord: 31..135 score: 6.9

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G007250	CsaV3_5G023340	Cucumber (Chinese Long) v3	cmocucB0337

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G007250	Melon (DHL92) v3.6.1	cmomedB273
CmoCh15G007250	Melon (DHL92) v3.6.1	cmomedB307
CmoCh15G007250	Silver-seed gourd	carcmoB0714
CmoCh15G007250	Silver-seed gourd	carcmoB0915
CmoCh15G007250	Silver-seed gourd	carcmoB1118
CmoCh15G007250	Cucumber (Chinese Long) v3	cmocucB0333
CmoCh15G007250	Watermelon (97103) v2	cmowmbB280
CmoCh15G007250	Watermelon (97103) v2	cmowmbB283
CmoCh15G007250	Wax gourd	cmowgoB0367
CmoCh15G007250	Wax gourd	cmowgoB0404
CmoCh15G007250	Cucurbita moschata (Rifu)	cmocmoB245
CmoCh15G007250	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G007250	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G007250	Cucurbita maxima (Rimu)	cmacmoB465
CmoCh15G007250	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G007250	Wild cucumber (PI 183967)	cmocpiB284
CmoCh15G007250	Wild cucumber (PI 183967)	cmocpiB289
CmoCh15G007250	Cucumber (Chinese Long) v2	cmocuB276
CmoCh15G007250	Cucumber (Chinese Long) v2	cmocuB280
CmoCh15G007250	Melon (DHL92) v3.5.1	cmomeB240
CmoCh15G007250	Melon (DHL92) v3.5.1	cmomeB273
CmoCh15G007250	Watermelon (Charleston Gray)	cmowcgB242
CmoCh15G007250	Watermelon (Charleston Gray)	cmowcgB250
CmoCh15G007250	Watermelon (97103) v1	cmowmB253
CmoCh15G007250	Watermelon (97103) v1	cmowmB254
CmoCh15G007250	Watermelon (97103) v1	cmowmB279
CmoCh15G007250	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G007250	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G007250	Cucurbita pepo (Zucchini)	cmocpeB289
CmoCh15G007250	Bottle gourd (USVL1VR-Ls)	cmolsiB256
CmoCh15G007250	Bottle gourd (USVL1VR-Ls)	cmolsiB251
CmoCh15G007250	Bottle gourd (USVL1VR-Ls)	cmolsiB271
CmoCh15G007250	Cucumber (Gy14) v2	cgybcmoB459
CmoCh15G007250	Cucumber (Gy14) v2	cgybcmoB574