CmoCh15G007080 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G007080
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 3442588 .. 3442929 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATCAAGTTTGGCTTTGGTTATCAAGGAATGAAGAAGGTAGGTTGGTGAATAACCCATCGATAAACATACTCGAAGAATCAGTTTCTAGACACTGTAGCTTTTGGGTCCGAACTCTACTTTCGTAGGGTCTGAAATTTGGGCTTTAGCATTTATTGGCTTCCATTACTGTATTTGGGTCATTTTCAGATGTGCAGTGCTCTTGATTCTGCTACTAAGTTGGTTGAATCAACCACAAAATCAAGATTTTTGCAGGAGAAGATTGTGGAGGAGCTTGAACATGTTCTTGAAAAGGGACATTCTACAAGTGCAGCCGCCATGGTCCACCCTATCCAGTTGTAG

mRNA sequence

ATGATCAAGTTTGGCTTTGGTTATCAAGGAATGAAGAAGATGTGCAGTGCTCTTGATTCTGCTACTAAGTTGGTTGAATCAACCACAAAATCAAGATTTTTGCAGGAGAAGATTGTGGAGGAGCTTGAACATGTTCTTGAAAAGGGACATTCTACAAGTGCAGCCGCCATGGTCCACCCTATCCAGTTGTAG

Coding sequence (CDS)

ATGATCAAGTTTGGCTTTGGTTATCAAGGAATGAAGAAGATGTGCAGTGCTCTTGATTCTGCTACTAAGTTGGTTGAATCAACCACAAAATCAAGATTTTTGCAGGAGAAGATTGTGGAGGAGCTTGAACATGTTCTTGAAAAGGGACATTCTACAAGTGCAGCCGCCATGGTCCACCCTATCCAGTTGTAG
Homology
[Close]
BLAST of CmoCh15G007080 vs. TrEMBL
Match: A0A0A0K969_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040570 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.7e-07
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  KMCSALDSATKLVEST-TKSRFLQEKIVEELEHVLEKGHSTSAAAM 58
           KMCSALD+ATKLVEST + SRFL EKIV ELEHVLEKG +T  AAM
Sbjct: 87  KMCSALDTATKLVESTNSNSRFLLEKIV-ELEHVLEKGDATREAAM 131

[Close]
BLAST of CmoCh15G007080 vs. NCBI nr
Match: gi|659089750|ref|XP_008445672.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X1 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  KMCSALDSATKLVEST-TKSRFLQEKIVEELEHVLEKGHSTSAAAM 58
           KMCSALD+ATKLVEST + SRFL EKIV ELEHVLEKG +T  AAM
Sbjct: 87  KMCSALDTATKLVESTNSNSRFLLEKIV-ELEHVLEKGDATREAAM 131

[Close]
BLAST of CmoCh15G007080 vs. NCBI nr
Match: gi|449446209|ref|XP_004140864.1| (PREDICTED: uncharacterized protein LOC101219718 [Cucumis sativus])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  KMCSALDSATKLVEST-TKSRFLQEKIVEELEHVLEKGHSTSAAAM 58
           KMCSALD+ATKLVEST + SRFL EKIV ELEHVLEKG +T  AAM
Sbjct: 87  KMCSALDTATKLVESTNSNSRFLLEKIV-ELEHVLEKGDATREAAM 131

[Close]
BLAST of CmoCh15G007080 vs. NCBI nr
Match: gi|659089752|ref|XP_008445673.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X2 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  KMCSALDSATKLVEST-TKSRFLQEKIVEELEHVLEKGHSTSAAAM 58
           KMCSALD+ATKLVEST + SRFL EKIV ELEHVLEKG +T  AAM
Sbjct: 87  KMCSALDTATKLVESTNSNSRFLLEKIV-ELEHVLEKGDATREAAM 131

[Close]
BLAST of CmoCh15G007080 vs. NCBI nr
Match: gi|659089754|ref|XP_008445675.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X3 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  KMCSALDSATKLVEST-TKSRFLQEKIVEELEHVLEKGHSTSAAAM 58
           KMCSALD+ATKLVEST + SRFL EKIV ELEHVLEKG +T  AAM
Sbjct: 87  KMCSALDTATKLVESTNSNSRFLLEKIV-ELEHVLEKGDATREAAM 131

[Close]
BLAST of CmoCh15G007080 vs. NCBI nr
Match: gi|659089757|ref|XP_008445676.1| (PREDICTED: uncharacterized protein LOC103488633 isoform X4 [Cucumis melo])

HSP 1 Score: 60.5 bits (145), Expect = 1.2e-06
Identity = 36/46 (78.26%), Postives = 39/46 (84.78%), Query Frame = 1 

Query: 13  KMCSALDSATKLVEST-TKSRFLQEKIVEELEHVLEKGHSTSAAAM 58
           KMCSALD+ATKLVEST + SRFL EKIV ELEHVLEKG +T  AAM
Sbjct: 87  KMCSALDTATKLVESTNSNSRFLLEKIV-ELEHVLEKGDATREAAM 131

The following BLAST results are available for this feature:
BLAST of CmoCh15G007080 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G007080 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K969_CUCSA8.7e-0778.26Uncharacterized protein OS=Cucumis sativus GN=Csa_6G040570 PE=4 SV=1[more]
BLAST of CmoCh15G007080 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G007080 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659089750|ref|XP_008445672.1|1.2e-0678.26PREDICTED: uncharacterized protein LOC103488633 isoform X1 [Cucumis melo][more]
gi|449446209|ref|XP_004140864.1|1.2e-0678.26PREDICTED: uncharacterized protein LOC101219718 [Cucumis sativus][more]
gi|659089752|ref|XP_008445673.1|1.2e-0678.26PREDICTED: uncharacterized protein LOC103488633 isoform X2 [Cucumis melo][more]
gi|659089754|ref|XP_008445675.1|1.2e-0678.26PREDICTED: uncharacterized protein LOC103488633 isoform X3 [Cucumis melo][more]
gi|659089757|ref|XP_008445676.1|1.2e-0678.26PREDICTED: uncharacterized protein LOC103488633 isoform X4 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G007080.1CmoCh15G007080.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G007080ClCG08G005410Watermelon (Charleston Gray)cmowcgB265
CmoCh15G007080Lsi08G004130Bottle gourd (USVL1VR-Ls)cmolsiB282
CmoCh15G007080CsaV3_6G003590Cucumber (Chinese Long) v3cmocucB0365
CmoCh15G007080Cla97C08G148250Watermelon (97103) v2cmowmbB302
CmoCh15G007080Bhi04G001558Wax gourdcmowgoB0395
CmoCh15G007080Carg24452Silver-seed gourdcarcmoB0603
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G007080Cucurbita maxima (Rimu)cmacmoB037
CmoCh15G007080Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G007080Cucurbita maxima (Rimu)cmacmoB465
CmoCh15G007080Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G007080Wild cucumber (PI 183967)cmocpiB284
CmoCh15G007080Wild cucumber (PI 183967)cmocpiB313
CmoCh15G007080Cucumber (Chinese Long) v2cmocuB276
CmoCh15G007080Cucumber (Chinese Long) v2cmocuB304
CmoCh15G007080Melon (DHL92) v3.5.1cmomeB273
CmoCh15G007080Watermelon (Charleston Gray)cmowcgB242
CmoCh15G007080Watermelon (97103) v1cmowmB279
CmoCh15G007080Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G007080Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G007080Cucurbita pepo (Zucchini)cmocpeB289
CmoCh15G007080Cucurbita pepo (Zucchini)cmocpeB298
CmoCh15G007080Bottle gourd (USVL1VR-Ls)cmolsiB271
CmoCh15G007080Cucumber (Gy14) v2cgybcmoB459
CmoCh15G007080Cucumber (Gy14) v2cgybcmoB729
CmoCh15G007080Melon (DHL92) v3.6.1cmomedB307
CmoCh15G007080Silver-seed gourdcarcmoB0915
CmoCh15G007080Silver-seed gourdcarcmoB1118
CmoCh15G007080Cucumber (Chinese Long) v3cmocucB0333
CmoCh15G007080Watermelon (97103) v2cmowmbB280
CmoCh15G007080Wax gourdcmowgoB0386
CmoCh15G007080Wax gourdcmowgoB0404
CmoCh15G007080Cucurbita moschata (Rifu)cmocmoB008
CmoCh15G007080Cucurbita moschata (Rifu)cmocmoB245
CmoCh15G007080Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G007080Cucumber (Gy14) v1cgycmoB0995