CmoCh15G006980 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006980
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Eukaryotic aspartyl protease family protein
Location	Cmo_Chr15 : 3408052 .. 3409023 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATGTTTCAGCCGTGAGATTTCCCAGACTGTAAATGGGCCCAGTTTTACAAATAGCCCACTCGGCCCATTTTAGAATATGGGCCCACGTTTATAAATTGGGCCAAACTCTCGGCTCAATTCTTTTTTCCTAAGGTGGGCCCATAGGCCTTTATATGAAGTTCATCTTAATAAAATAAATATTTTAAGTTTTTTTTTTTTAATTTAATTTTCAATATTTTATTCATATATAATATATGATATAATTATTATGAAACTAAAAAGATTATAAATGTATATTTCTTTTTAATTTTTAACATGATACGTTCAGGCTCGGAGAAGCAAGCCAGCAAGTTTTTGTTCGAGACATAATGTTTGGGTGCTGGGGTAATGGGGCTCAGCCGAGGTCGATTGTCGCTTCTTTCGTAGCTCGATATTCACACTGGGAGTCCGACCTTTAGATCTTCAACAAACCTCGACGACACTATGAATGTAGCCATCAGGCATCGCGGGCATGCCTCTGATACAACATCCATTTGAGCCCTCTTTCTACTACCTAACTCTACAAGGAACCACAGTAGGCCAACAGTTCTCGCCCATCCCGACCTCGTCGTTTAGACTACACACTGATGGCAGTGGCGACACGATCATAGATTCTGGCACATCGATCACCTACTTAATAGAGGATGCTTCTAATGTGCTGAAGCCAGTTTTTACTCCACAGACAAACCTCCCAGCTGCCTTCACACAACAACAGCAAACTGGATGAACCTGATTTGATATTTCATTACGAGGGCCTCGACTTGAAGCTTCGAATTGAGAACTTTATGGTCATCGATGAGGAGCGAGGGTCGGTGTGCTTCGCAATCGGAGCTGCAAGAGGTTTGTCAATTTTCGGCAGCATGCAACACCAGGATACATTGGTTACTCATGATCTTGAGCACGAGGTCTTATCGTTTATTCCCACACCACGTGCTAACGTCGGTTACTAG

mRNA sequence

ATGTATGTTTCAGCCGTGAGATTTCCCAGACTACAAACCTCCCAGCTGCCTTCACACAACAACAGCAAACTGGATGAACCTGATTTGATATTTCATTACGAGGGCCTCGACTTGAAGCTTCGAATTGAGAACTTTATGGTCATCGATGAGGAGCGAGGGTCGGTGTGCTTCGCAATCGGAGCTGCAAGAGGTTTGTCAATTTTCGGCAGCATGCAACACCAGGATACATTGGTTACTCATGATCTTGAGCACGAGGTCTTATCGTTTATTCCCACACCACGTGCTAACGTCGGTTACTAG

Coding sequence (CDS)

ATGTATGTTTCAGCCGTGAGATTTCCCAGACTACAAACCTCCCAGCTGCCTTCACACAACAACAGCAAACTGGATGAACCTGATTTGATATTTCATTACGAGGGCCTCGACTTGAAGCTTCGAATTGAGAACTTTATGGTCATCGATGAGGAGCGAGGGTCGGTGTGCTTCGCAATCGGAGCTGCAAGAGGTTTGTCAATTTTCGGCAGCATGCAACACCAGGATACATTGGTTACTCATGATCTTGAGCACGAGGTCTTATCGTTTATTCCCACACCACGTGCTAACGTCGGTTACTAG

Homology

[Close]

BLAST of CmoCh15G006980 vs. Swiss-Prot
Match: NEP2_NEPGR (Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-07
Identity = 29/80 (36.25%), Postives = 51/80 (63.75%), Query Frame = 1


Query: 15  QLPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAAR--GLSIFGSMQ 74
           Q PS + S +  P++   ++G  L L  +N ++   E G +C A+G++   G+SIFG++Q
Sbjct: 356 QQPS-DGSTVQVPEISMQFDGGVLNLGEQNILISPAE-GVICLAMGSSSQLGISIFGNIQ 415

Query: 75  HQDTLVTHDLEHEVLSFIPT 93
            Q+T V +DL++  +SF+PT
Sbjct: 416 QQETQVLYDLQNLAVSFVPT 433

[Close]

BLAST of CmoCh15G006980 vs. TrEMBL
Match: A0A059B9W8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05072 PE=3 SV=1)

HSP 1 Score: 90.9 bits (224), Expect = 9.5e-16
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 15  QLPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQ 74
           +LPS ++S+++ P LIFH+EG DL L  EN+M+ D   G VC A+G++ G+SIFG++Q Q
Sbjct: 364 KLPS-DSSQVEVPKLIFHFEGADLDLPGENYMIADSTVGLVCLAMGSSSGMSIFGNVQQQ 423

Query: 75  DTLVTHDLEHEVLSFIPT 93
           DT+V HDL  E LSF+PT
Sbjct: 424 DTMVIHDLAKETLSFLPT 440

[Close]

BLAST of CmoCh15G006980 vs. TrEMBL
Match: M1C4Y3_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023324 PE=3 SV=1)

HSP 1 Score: 88.2 bits (217), Expect = 6.1e-15
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LPS+ N+ ++ P LIFH+EG D+ L  EN+M+ D   G  C A+G++ G+SIFG++Q Q+
Sbjct: 364 LPSNTNN-IEVPKLIFHFEGADMDLPAENYMIADSRMGIACLAMGSSSGMSIFGNVQQQN 423

Query: 76  TLVTHDLEHEVLSFIPT 93
            +V HDL+ E LSF+PT
Sbjct: 424 MMVIHDLDKETLSFVPT 439

[Close]

BLAST of CmoCh15G006980 vs. TrEMBL
Match: B9N2J4_POPTR (Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0019s01600g PE=3 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 1.4e-14
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LPS  ++ ++ P L+FH++G DL+L  EN+M+ D   G  C A+G++ G+SIFG++Q Q+
Sbjct: 359 LPS-GSTDIEVPKLVFHFDGADLELPAENYMIADASMGVACLAMGSSSGMSIFGNIQQQN 418

Query: 76  TLVTHDLEHEVLSFIPT 93
            LV HDLE E LSF+PT
Sbjct: 419 MLVLHDLEKETLSFLPT 434

[Close]

BLAST of CmoCh15G006980 vs. TrEMBL
Match: F6H0S5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03090 PE=3 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 40/77 (51.95%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LP  N +++  P LIFH++GLDL L +EN+MV D E G +C AI A   LSIFG++Q Q+
Sbjct: 365 LPVKNAAEVKVPKLIFHFKGLDLALPVENYMVSDPEMGLICLAIDATGSLSIFGNIQQQN 424

Query: 76  TLVTHDLEHEVLSFIPT 93
            LV HDL+   LS +PT
Sbjct: 425 MLVLHDLKKSTLSLVPT 441

[Close]

BLAST of CmoCh15G006980 vs. TrEMBL
Match: B9GH97_POPTR (Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0001s31370g PE=3 SV=2)

HSP 1 Score: 86.7 bits (213), Expect = 1.8e-14
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LPS  ++ ++ P L+FH++G DL+L  EN+M+ D   G  C A+G++ G+SIFG++Q Q+
Sbjct: 359 LPS-GSTNIEVPKLVFHFDGADLELPAENYMIGDSSMGVACLAMGSSSGMSIFGNVQQQN 418

Query: 76  TLVTHDLEHEVLSFIPT 93
            LV HDLE E LSF+PT
Sbjct: 419 MLVLHDLEKETLSFLPT 434

[Close]

BLAST of CmoCh15G006980 vs. TAIR10
Match: AT2G03200.1 (AT2G03200.1 Eukaryotic aspartyl protease family protein)

HSP 1 Score: 80.1 bits (196), Expect = 8.4e-16
Identity = 34/66 (51.52%), Postives = 49/66 (74.24%), Query Frame = 1


Query: 27  PDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQDTLVTHDLEHEV 86
           P +IFH++G DL+L  EN+MV D   G +C A+G++ G+SIFG++Q Q+  V HDLE E 
Sbjct: 391 PKMIFHFKGADLELPGENYMVADSSTGVLCLAMGSSNGMSIFGNVQQQNFNVLHDLEKET 450

Query: 87  LSFIPT 93
           +SF+PT
Sbjct: 451 VSFVPT 456

[Close]

BLAST of CmoCh15G006980 vs. NCBI nr
Match: gi|702451449|ref|XP_010025709.1| (PREDICTED: aspartic proteinase nepenthesin-1 [Eucalyptus grandis])

HSP 1 Score: 90.9 bits (224), Expect = 1.4e-15
Identity = 42/78 (53.85%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 15  QLPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQ 74
           +LPS ++S+++ P LIFH+EG DL L  EN+M+ D   G VC A+G++ G+SIFG++Q Q
Sbjct: 364 KLPS-DSSQVEVPKLIFHFEGADLDLPGENYMIADSTVGLVCLAMGSSSGMSIFGNVQQQ 423

Query: 75  DTLVTHDLEHEVLSFIPT 93
           DT+V HDL  E LSF+PT
Sbjct: 424 DTMVIHDLAKETLSFLPT 440

[Close]

BLAST of CmoCh15G006980 vs. NCBI nr
Match: gi|1009146336|ref|XP_015890828.1| (PREDICTED: aspartic proteinase nepenthesin-1 [Ziziphus jujuba])

HSP 1 Score: 89.7 bits (221), Expect = 3.0e-15
Identity = 40/78 (51.28%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 15  QLPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQ 74
           +LPS ++SK+D P LIFH++G DL    EN++++D + G +C A+GA+ G+SI G+ Q Q
Sbjct: 383 KLPS-DSSKVDVPKLIFHFDGADLDFPPENYVLLDSDLGLLCLAMGASSGMSILGNFQQQ 442

Query: 75  DTLVTHDLEHEVLSFIPT 93
           +TLV HDL+ E LSF+PT
Sbjct: 443 NTLVLHDLQKETLSFVPT 459

[Close]

BLAST of CmoCh15G006980 vs. NCBI nr
Match: gi|565357888|ref|XP_006345762.1| (PREDICTED: aspartic proteinase nepenthesin-1 [Solanum tuberosum])

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-15
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LPS+ N+ ++ P LIFH+EG D+ L  EN+M+ D   G  C A+G++ G+SIFG++Q Q+
Sbjct: 364 LPSNTNN-IEVPKLIFHFEGADMDLPAENYMIADSRMGIACLAMGSSSGMSIFGNVQQQN 423

Query: 76  TLVTHDLEHEVLSFIPT 93
            +V HDL+ E LSF+PT
Sbjct: 424 MMVIHDLDKETLSFVPT 439

[Close]

BLAST of CmoCh15G006980 vs. NCBI nr
Match: gi|697143018|ref|XP_009625615.1| (PREDICTED: aspartic proteinase nepenthesin-1 [Nicotiana tomentosiformis])

HSP 1 Score: 88.2 bits (217), Expect = 8.8e-15
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LPS+ N+ ++ P L+FH+EG DL L  +N+M+ D   G  C A+G++ G+SIFG++Q Q+
Sbjct: 368 LPSNTNN-IEVPKLVFHFEGADLDLPADNYMIADSSMGVACLAMGSSSGMSIFGNVQQQN 427

Query: 76  TLVTHDLEHEVLSFIPT 93
            LV HDL+ E LSF+PT
Sbjct: 428 MLVIHDLDKETLSFVPT 443

[Close]

BLAST of CmoCh15G006980 vs. NCBI nr
Match: gi|566222317|ref|XP_006370905.1| (aspartyl protease family protein [Populus trichocarpa])

HSP 1 Score: 87.0 bits (214), Expect = 2.0e-14
Identity = 38/77 (49.35%), Postives = 56/77 (72.73%), Query Frame = 1


Query: 16  LPSHNNSKLDEPDLIFHYEGLDLKLRIENFMVIDEERGSVCFAIGAARGLSIFGSMQHQD 75
           LPS  ++ ++ P L+FH++G DL+L  EN+M+ D   G  C A+G++ G+SIFG++Q Q+
Sbjct: 359 LPS-GSTDIEVPKLVFHFDGADLELPAENYMIADASMGVACLAMGSSSGMSIFGNIQQQN 418

Query: 76  TLVTHDLEHEVLSFIPT 93
            LV HDLE E LSF+PT
Sbjct: 419 MLVLHDLEKETLSFLPT 434

The following BLAST results are available for this feature:

BLAST of CmoCh15G006980 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NEP2_NEPGR	6.7e-07	36.25	Aspartic proteinase nepenthesin-2 OS=Nepenthes gracilis GN=nep2 PE=1 SV=1	[more]

BLAST of CmoCh15G006980 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A059B9W8_EUCGR	9.5e-16	53.85	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_H05072 PE=3 SV=1	[more]
M1C4Y3_SOLTU	6.1e-15	49.35	Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400023324 PE=3 SV=1	[more]
B9N2J4_POPTR	1.4e-14	49.35	Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0019s01600g PE=...	[more]
F6H0S5_VITVI	1.8e-14	51.95	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g03090 PE=3 SV=...	[more]
B9GH97_POPTR	1.8e-14	49.35	Aspartyl protease family protein OS=Populus trichocarpa GN=POPTR_0001s31370g PE=...	[more]

BLAST of CmoCh15G006980 vs. TAIR10


Match Name	E-value	Identity	Description
AT2G03200.1	8.4e-16	51.52	Eukaryotic aspartyl protease family protein	[more]

BLAST of CmoCh15G006980 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|702451449\|ref\|XP_010025709.1\|	1.4e-15	53.85	PREDICTED: aspartic proteinase nepenthesin-1 [Eucalyptus grandis]	[more]
gi\|1009146336\|ref\|XP_015890828.1\|	3.0e-15	51.28	PREDICTED: aspartic proteinase nepenthesin-1 [Ziziphus jujuba]	[more]
gi\|565357888\|ref\|XP_006345762.1\|	8.8e-15	49.35	PREDICTED: aspartic proteinase nepenthesin-1 [Solanum tuberosum]	[more]
gi\|697143018\|ref\|XP_009625615.1\|	8.8e-15	49.35	PREDICTED: aspartic proteinase nepenthesin-1 [Nicotiana tomentosiformis]	[more]
gi\|566222317\|ref\|XP_006370905.1\|	2.0e-14	49.35	aspartyl protease family protein [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001461	Aspartic_peptidase_A1
IPR021109	Peptidase_aspartic_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0004190	aspartic-type endopeptidase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0006508	proteolysis

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044249	cellular biosynthetic process
biological_process	GO:0006508	proteolysis
biological_process	GO:0044699	single-organism process
biological_process	GO:0045491	xylan metabolic process
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004190	aspartic-type endopeptidase activity
molecular_function	GO:0016787	hydrolase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006980.1	CmoCh15G006980.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001461	Aspartic peptidase A1 family	PANTHER	PTHR13683	ASPARTYL PROTEASES	coord: 2..92 score: 3.6
IPR021109	Aspartic peptidase domain	GENE3D	G3DSA:2.40.70.10		coord: 23..92 score: 4.
IPR021109	Aspartic peptidase domain	unknown	SSF50630	Acid proteases	coord: 21..93 score: 8.67
None	No IPR available	PANTHER	PTHR13683:SF223	ASPARTYL PROTEASE FAMILY PROTEIN	coord: 2..92 score: 3.6

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006980	CSPI06G20500	Wild cucumber (PI 183967)	cmocpiB307
CmoCh15G006980	Lsi08G004290	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006980	Cla97C08G148380	Watermelon (97103) v2	cmowmbB302
CmoCh15G006980	Bhi04G001526	Wax gourd	cmowgoB0386
CmoCh15G006980	CsGy6G019950	Cucumber (Gy14) v2	cgybcmoB723

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006980	Melon (DHL92) v3.6.1	cmomedB293
CmoCh15G006980	Melon (DHL92) v3.6.1	cmomedB307
CmoCh15G006980	Silver-seed gourd	carcmoB0603
CmoCh15G006980	Silver-seed gourd	carcmoB0915
CmoCh15G006980	Silver-seed gourd	carcmoB1118
CmoCh15G006980	Cucumber (Chinese Long) v3	cmocucB0333
CmoCh15G006980	Watermelon (97103) v2	cmowmbB280
CmoCh15G006980	Wax gourd	cmowgoB0404
CmoCh15G006980	Cucurbita moschata (Rifu)	cmocmoB008
CmoCh15G006980	Cucurbita moschata (Rifu)	cmocmoB245
CmoCh15G006980	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G006980	Cucurbita maxima (Rimu)	cmacmoB037
CmoCh15G006980	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006980	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006980	Wild cucumber (PI 183967)	cmocpiB284
CmoCh15G006980	Cucumber (Chinese Long) v2	cmocuB276
CmoCh15G006980	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006980	Melon (DHL92) v3.5.1	cmomeB273
CmoCh15G006980	Watermelon (Charleston Gray)	cmowcgB242
CmoCh15G006980	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006980	Watermelon (97103) v1	cmowmB250
CmoCh15G006980	Watermelon (97103) v1	cmowmB279
CmoCh15G006980	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006980	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006980	Cucurbita pepo (Zucchini)	cmocpeB298
CmoCh15G006980	Bottle gourd (USVL1VR-Ls)	cmolsiB271
CmoCh15G006980	Cucumber (Gy14) v2	cgybcmoB459