CmoCh15G006820 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G006820
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTwo-component response regulator
LocationCmo_Chr15 : 3337861 .. 3338359 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGGTAAGAAATCCAATCCATAGCTAAATTCACATACTTTCTTTTTTAAAACCATTTTATAATACAATCCAATGCCCAGCAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGGTATCTGGGCCTGCTTGATGACCTTGACAACTTTTCTTCTCCATTTTCTCCCCCACGTCTCTCCCAACAACAGGTCATTTTAATTAATTTTTTTTTCTATTATAGCCTTTAA

mRNA sequence

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGCCTTTAA

Coding sequence (CDS)

ATGGAGTTGATGAAAGCAGGAGACGTAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCATTTCCACGTGCTGGCAGTGGACGACAGCCTACTAGAAAGAAAGGTTCTGGAAAAGCTCCTAACAATTTCTTCTTCATGCGAAGTGACCTGCGTGGAGTCTGGAGATAAGGCTCTAAGCCTTTAA
Homology
[Close]
BLAST of CmoCh15G006820 vs. TrEMBL
Match: E0CR50_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g02540 PE=4 SV=1)

HSP 1 Score: 61.6 bits (148), Expect = 6.4e-07
Identity = 38/54 (70.37%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 49  EEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           +++ E  QQQ+Q +QHFHVLAVDDSL++RK+LEKLLT+ SS  VTCVESGDKAL
Sbjct: 2   KQDNESTQQQKQLEQHFHVLAVDDSLIDRKLLEKLLTV-SSYHVTCVESGDKAL 54

[Close]
BLAST of CmoCh15G006820 vs. TrEMBL
Match: M5Y345_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010373mg PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 1.4e-06
Identity = 37/54 (68.52%), Postives = 47/54 (87.04%), Query Frame = 1 

Query: 49  EEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           + E + QQQQQ+++QHFHVLAVDDSLL+RK+LE+LL   SS +VTCVESGD+AL
Sbjct: 17  DSEPQKQQQQQEEEQHFHVLAVDDSLLDRKLLERLLR-GSSYQVTCVESGDEAL 69

[Close]
BLAST of CmoCh15G006820 vs. TAIR10
Match: AT3G57040.1 (AT3G57040.1 response regulator 9)

HSP 1 Score: 50.1 bits (118), Expect = 9.8e-07
Identity = 26/41 (63.41%), Postives = 33/41 (80.49%), Query Frame = 1 

Query: 62  QQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           +  FHVLAVDDSL +RK++E+LL   SSC+VT V+SG KAL
Sbjct: 6   ESQFHVLAVDDSLFDRKLIERLLQ-KSSCQVTTVDSGSKAL 45

[Close]
BLAST of CmoCh15G006820 vs. TAIR10
Match: AT1G19050.1 (AT1G19050.1 response regulator 7)

HSP 1 Score: 50.1 bits (118), Expect = 9.8e-07
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 

Query: 66  HVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           HVLAVDDS+++RKV+E+LL I SSC+VT VESG +AL
Sbjct: 25  HVLAVDDSIVDRKVIERLLRI-SSCKVTTVESGTRAL 60

[Close]
BLAST of CmoCh15G006820 vs. TAIR10
Match: AT2G41310.1 (AT2G41310.1 response regulator 3)

HSP 1 Score: 48.9 bits (115), Expect = 2.2e-06
Identity = 26/43 (60.47%), Postives = 34/43 (79.07%), Query Frame = 1 

Query: 60  QQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           + +  FHVLAVDDSL +RK++E+LL   SSC+VT V+SG KAL
Sbjct: 4   ETESKFHVLAVDDSLFDRKMIERLLQ-KSSCQVTTVDSGSKAL 45

[Close]
BLAST of CmoCh15G006820 vs. TAIR10
Match: AT1G74890.1 (AT1G74890.1 response regulator 15)

HSP 1 Score: 48.1 bits (113), Expect = 3.7e-06
Identity = 25/37 (67.57%), Postives = 32/37 (86.49%), Query Frame = 1 

Query: 66  HVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           HVLAVDDS ++RKV+E+LL I S+C+VT VESG +AL
Sbjct: 19  HVLAVDDSFVDRKVIERLLKI-SACKVTTVESGTRAL 54

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: gi|502135894|ref|XP_004502490.1| (PREDICTED: two-component response regulator ARR17-like [Cicer arietinum])

HSP 1 Score: 67.0 bits (162), Expect = 2.2e-08
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 1 

Query: 60  QQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQ HFHVLAVDDSL +RK+LE+LL   SSC+VTCV+SGDKAL
Sbjct: 26  QQQHHFHVLAVDDSLTDRKLLERLLIAGSSCKVTCVDSGDKAL 68

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: gi|1021533056|ref|XP_016163494.1| (PREDICTED: two-component response regulator ORR9-like, partial [Arachis ipaensis])

HSP 1 Score: 66.2 bits (160), Expect = 3.8e-08
Identity = 34/44 (77.27%), Postives = 41/44 (93.18%), Query Frame = 1 

Query: 59  QQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           QQQQQHFHVLAVDDS+++RK+LE+LL   SSC+VTCV+SGDKAL
Sbjct: 10  QQQQQHFHVLAVDDSVIDRKLLERLLR-DSSCKVTCVDSGDKAL 52

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: gi|950971001|ref|XP_014500206.1| (PREDICTED: two-component response regulator ORR9-like [Vigna radiata var. radiata])

HSP 1 Score: 65.1 bits (157), Expect = 8.4e-08
Identity = 35/50 (70.00%), Postives = 45/50 (90.00%), Query Frame = 1 

Query: 53  EVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           ++QQQ Q Q+QHFHVLAVDDS+++RK+LE+LL   SSC+VTCV+SGDKAL
Sbjct: 10  QLQQQPQPQEQHFHVLAVDDSVIDRKLLERLLR-GSSCKVTCVDSGDKAL 58

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: gi|593328020|ref|XP_007137437.1| (hypothetical protein PHAVU_009G127000g [Phaseolus vulgaris])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 35/51 (68.63%), Postives = 46/51 (90.20%), Query Frame = 1 

Query: 52  EEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           +++QQQ Q Q+QHFHVLAVDDS+++RK+LE+LL   SSC+VTCV+SGDKAL
Sbjct: 12  QQLQQQPQPQEQHFHVLAVDDSVIDRKLLERLLR-GSSCKVTCVDSGDKAL 61

[Close]
BLAST of CmoCh15G006820 vs. NCBI nr
Match: gi|659133431|ref|XP_008466725.1| (PREDICTED: two-component response regulator ARR17-like isoform X2 [Cucumis melo])

HSP 1 Score: 64.3 bits (155), Expect = 1.4e-07
Identity = 40/55 (72.73%), Postives = 49/55 (89.09%), Query Frame = 1 

Query: 48  EEEEEEVQQQQQQQQQHFHVLAVDDSLLERKVLEKLLTISSSCEVTCVESGDKAL 103
           E ++ EV+++ QQQ  HFHVLAVDDSL++RK+LEKLLTI SSC+VTCVESGDKAL
Sbjct: 2   ELKKTEVEEKVQQQHHHFHVLAVDDSLIDRKLLEKLLTI-SSCQVTCVESGDKAL 55

The following BLAST results are available for this feature:
BLAST of CmoCh15G006820 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006820 vs. TrEMBL
Match NameE-valueIdentityDescription
E0CR50_VITVI6.4e-0770.37Putative uncharacterized protein OS=Vitis vinifera GN=VIT_18s0001g02540 PE=4 SV=... [more]
M5Y345_PRUPE1.4e-0668.52Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa010373mg PE=4 SV=1[more]
BLAST of CmoCh15G006820 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G57040.19.8e-0763.41 response regulator 9[more]
AT1G19050.19.8e-0770.27 response regulator 7[more]
AT2G41310.12.2e-0660.47 response regulator 3[more]
AT1G74890.13.7e-0667.57 response regulator 15[more]
BLAST of CmoCh15G006820 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|502135894|ref|XP_004502490.1|2.2e-0876.74PREDICTED: two-component response regulator ARR17-like [Cicer arietinum][more]
gi|1021533056|ref|XP_016163494.1|3.8e-0877.27PREDICTED: two-component response regulator ORR9-like, partial [Arachis ipaensis... [more]
gi|950971001|ref|XP_014500206.1|8.4e-0870.00PREDICTED: two-component response regulator ORR9-like [Vigna radiata var. radiat... [more]
gi|593328020|ref|XP_007137437.1|1.4e-0768.63hypothetical protein PHAVU_009G127000g [Phaseolus vulgaris][more]
gi|659133431|ref|XP_008466725.1|1.4e-0772.73PREDICTED: two-component response regulator ARR17-like isoform X2 [Cucumis melo][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001789Sig_transdc_resp-reg_receiver
IPR011006CheY-like_superfamily
Vocabulary: Biological Process
TermDefinition
GO:0000160phosphorelay signal transduction system
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000160 phosphorelay signal transduction system
cellular_component GO:0005622 intracellular
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006820.1CmoCh15G006820.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001789Signal transduction response regulator, receiver domainPROFILEPS50110RESPONSE_REGULATORYcoord: 66..104
score: 11
IPR011006CheY-like superfamilyunknownSSF52172CheY-likecoord: 65..103
score: 5.5
NoneNo IPR availableunknownCoilCoilcoord: 3..64
scor
NoneNo IPR availableGENE3DG3DSA:3.40.50.2300coord: 55..103
score: 1.
NoneNo IPR availablePANTHERPTHR26402RESPONSE REGULATOR OF TWO-COMPONENT SYSTEMcoord: 65..102
score: 1.3
NoneNo IPR availablePANTHERPTHR26402:SF498SUBFAMILY NOT NAMEDcoord: 65..102
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G006820Cucumber (Gy14) v2cgybcmoB459
CmoCh15G006820Cucumber (Gy14) v2cgybcmoB723
CmoCh15G006820Melon (DHL92) v3.6.1cmomedB293
CmoCh15G006820Melon (DHL92) v3.6.1cmomedB307
CmoCh15G006820Silver-seed gourdcarcmoB0603
CmoCh15G006820Silver-seed gourdcarcmoB0915
CmoCh15G006820Silver-seed gourdcarcmoB1118
CmoCh15G006820Cucumber (Chinese Long) v3cmocucB0333
CmoCh15G006820Cucumber (Chinese Long) v3cmocucB0360
CmoCh15G006820Watermelon (97103) v2cmowmbB280
CmoCh15G006820Watermelon (97103) v2cmowmbB302
CmoCh15G006820Wax gourdcmowgoB0386
CmoCh15G006820Wax gourdcmowgoB0404
CmoCh15G006820Cucurbita moschata (Rifu)cmocmoB008
CmoCh15G006820Cucurbita moschata (Rifu)cmocmoB245
CmoCh15G006820Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G006820Cucumber (Gy14) v1cgycmoB0547
CmoCh15G006820Cucurbita maxima (Rimu)cmacmoB037
CmoCh15G006820Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G006820Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G006820Wild cucumber (PI 183967)cmocpiB284
CmoCh15G006820Wild cucumber (PI 183967)cmocpiB307
CmoCh15G006820Cucumber (Chinese Long) v2cmocuB276
CmoCh15G006820Cucumber (Chinese Long) v2cmocuB298
CmoCh15G006820Melon (DHL92) v3.5.1cmomeB259
CmoCh15G006820Melon (DHL92) v3.5.1cmomeB273
CmoCh15G006820Watermelon (Charleston Gray)cmowcgB242
CmoCh15G006820Watermelon (Charleston Gray)cmowcgB265
CmoCh15G006820Watermelon (97103) v1cmowmB250
CmoCh15G006820Watermelon (97103) v1cmowmB279
CmoCh15G006820Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G006820Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G006820Cucurbita pepo (Zucchini)cmocpeB298
CmoCh15G006820Bottle gourd (USVL1VR-Ls)cmolsiB271
CmoCh15G006820Bottle gourd (USVL1VR-Ls)cmolsiB282