CmoCh15G006170 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G006170
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 2996677 .. 2996997 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGTCTCTAATATTGTCCTCCTTCTATCTCTTCTCCCTTCTCATTGCATTACTCTCTTTAGATCTCCCCTCAAAATTGGCTGCACGTTCCCTTCACCCATCTCCATGCACCAATCCTCATCAATACCAGCCTCCGCCACCGCCTCTGCCGCCGTTTCCGTCTAAAAAACTCCCATATCCTCCTCCTTCAGTCTGCACCCAGCTCGCACCACCACCACCACCACCCAAGAACAGGCACAAATTCAAGACTTCGCCGCCGCATCGTATGCCGCCATGGCAAAGAAAGTTCACCCATACGTCACCTCCACCTCCTTTCTAA

mRNA sequence

ATGGGGTCTCTAATATTGTCCTCCTTCTATCTCTTCTCCCTTCTCATTGCATTACTCTCTTTAGATCTCCCCTCAAAATTGGCTGCACGTTCCCTTCACCCATCTCCATGCACCAATCCTCATCAATACCAGCCTCCGCCACCGCCTCTGCCGCCGTTTCCGTCTAAAAAACTCCCATATCCTCCTCCTTCAGTCTGCACCCAGCTCGCACCACCACCACCACCACCCAAGAACAGGCACAAATTCAAGACTTCGCCGCCGCATCGTATGCCGCCATGGCAAAGAAAGTTCACCCATACGTCACCTCCACCTCCTTTCTAA

Coding sequence (CDS)

ATGGGGTCTCTAATATTGTCCTCCTTCTATCTCTTCTCCCTTCTCATTGCATTACTCTCTTTAGATCTCCCCTCAAAATTGGCTGCACGTTCCCTTCACCCATCTCCATGCACCAATCCTCATCAATACCAGCCTCCGCCACCGCCTCTGCCGCCGTTTCCGTCTAAAAAACTCCCATATCCTCCTCCTTCAGTCTGCACCCAGCTCGCACCACCACCACCACCACCCAAGAACAGGCACAAATTCAAGACTTCGCCGCCGCATCGTATGCCGCCATGGCAAAGAAAGTTCACCCATACGTCACCTCCACCTCCTTTCTAA
Homology
[Close]
BLAST of CmoCh15G006170 vs. TrEMBL
Match: A0A0A0KI69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G336260 PE=4 SV=1)

HSP 1 Score: 66.6 bits (161), Expect = 2.0e-08
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 1 

Query: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60
           MG   L+S YLFSLLIA   L+LPSKL A  +H S  TN ++Y PPP PL          
Sbjct: 1   MGFETLAS-YLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPL---------L 60

Query: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 107
           PPP +C Q A  PPP K ++K K  P    PP    W R+FT  SPPPPF
Sbjct: 61  PPPPICRQGA--PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 98

[Close]
BLAST of CmoCh15G006170 vs. NCBI nr
Match: gi|700192262|gb|KGN47466.1| (hypothetical protein Csa_6G336260 [Cucumis sativus])

HSP 1 Score: 66.6 bits (161), Expect = 2.9e-08
Identity = 54/110 (49.09%), Postives = 63/110 (57.27%), Query Frame = 1 

Query: 1   MGSLILSSFYLFSLLIALLSLDLPSKLAARSLHPSPCTNPHQYQPPPPPLPPFPSKKLPY 60
           MG   L+S YLFSLLIA   L+LPSKL A  +H S  TN ++Y PPP PL          
Sbjct: 1   MGFETLAS-YLFSLLIAFFFLNLPSKLTAHYIHQSSSTNLYEYGPPPLPL---------L 60

Query: 61  PPPSVCTQLAPPPPPPKNRHKFKTSPPHRMPP----WQRKFTHTSPPPPF 107
           PPP +C Q A  PPP K ++K K  P    PP    W R+FT  SPPPPF
Sbjct: 61  PPPPICRQGA--PPPAKKQNKLKPLPSLSPPPPKFKWPRRFTPKSPPPPF 98

The following BLAST results are available for this feature:
BLAST of CmoCh15G006170 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006170 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KI69_CUCSA2.0e-0849.09Uncharacterized protein OS=Cucumis sativus GN=Csa_6G336260 PE=4 SV=1[more]
BLAST of CmoCh15G006170 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G006170 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700192262|gb|KGN47466.1|2.9e-0849.09hypothetical protein Csa_6G336260 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G006170.1CmoCh15G006170.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G006170Cucumber (Gy14) v2cgybcmoB900
CmoCh15G006170Silver-seed gourdcarcmoB0092
CmoCh15G006170Silver-seed gourdcarcmoB1118
CmoCh15G006170Cucumber (Chinese Long) v3cmocucB0367
CmoCh15G006170Watermelon (97103) v2cmowmbB302
CmoCh15G006170Watermelon (97103) v2cmowmbB306
CmoCh15G006170Wax gourdcmowgoB0386
CmoCh15G006170Cucurbita moschata (Rifu)cmocmoB009
CmoCh15G006170Cucurbita moschata (Rifu)cmocmoB262
CmoCh15G006170Cucumber (Gy14) v1cgycmoB0132
CmoCh15G006170Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G006170Cucurbita maxima (Rimu)cmacmoB693
CmoCh15G006170Cucumber (Chinese Long) v2cmocuB305
CmoCh15G006170Melon (DHL92) v3.5.1cmomeB259
CmoCh15G006170Watermelon (Charleston Gray)cmowcgB234
CmoCh15G006170Watermelon (Charleston Gray)cmowcgB265
CmoCh15G006170Watermelon (97103) v1cmowmB244
CmoCh15G006170Watermelon (97103) v1cmowmB250
CmoCh15G006170Cucurbita pepo (Zucchini)cmocpeB280
CmoCh15G006170Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G006170Cucurbita pepo (Zucchini)cmocpeB299
CmoCh15G006170Bottle gourd (USVL1VR-Ls)cmolsiB262
CmoCh15G006170Bottle gourd (USVL1VR-Ls)cmolsiB282