CmoCh15G006150 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006150
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr15 : 2989947 .. 2990186 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGTCTTCAATGGCTCCTATCGTTTTCGCCGTGTTAGCCGTATTAATCCTTTCTTTGGGCTTCCCCTCCGCCGTCGATGCTCGCTCTTCTCGTCACCACAGAAAAACTCTTCCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCATGTGGAAAGGCCACAAATCCGTCACCACCACCGCCCAAATTTCAATGGCCTCCTGATTTTGTCCGAAAGTCGCCGCCACCCCCGTTCTAG

mRNA sequence

ATGAGGTCTTCAATGGCTCCTATCGTTTTCGCCGTGTTAGCCGTATTAATCCTTTCTTTGGGCTTCCCCTCCGCCGTCGATGCTCGCTCTTCTCGTCACCACAGAAAAACTCTTCCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCATGTGGAAAGGCCACAAATCCGTCACCACCACCGCCCAAATTTCAATGGCCTCCTGATTTTGTCCGAAAGTCGCCGCCACCCCCGTTCTAG

Coding sequence (CDS)

ATGAGGTCTTCAATGGCTCCTATCGTTTTCGCCGTGTTAGCCGTATTAATCCTTTCTTTGGGCTTCCCCTCCGCCGTCGATGCTCGCTCTTCTCGTCACCACAGAAAAACTCTTCCACCACCACCGCCGCCGCCGCCGCCTCCTCCGCCATGTGGAAAGGCCACAAATCCGTCACCACCACCGCCCAAATTTCAATGGCCTCCTGATTTTGTCCGAAAGTCGCCGCCACCCCCGTTCTAG

Homology

[Close]

BLAST of CmoCh15G006150 vs. TrEMBL
Match: A0A0A0K8T1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G059230 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.1e-09
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1  MRSSMAPIVFAVLA-VLILSLGFPSAVDARSS--------RHHRKTLPPPPPPPPPPPPC 60
          M+SSM+ ++FA+L  +L+LS  F S VDA SS        RHHRK LPPPP        C
Sbjct: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPL-------C 60

Query: 61 GK-ATNPSPPPPKFQWPPDFVRKSPPPPF 80
          G  A  P PPPPKFQWPP+ V+KSPPPPF
Sbjct: 61 GTVARPPPPPPPKFQWPPNHVKKSPPPPF 82

[Close]

BLAST of CmoCh15G006150 vs. NCBI nr
Match: gi|700190956|gb|KGN46160.1| (hypothetical protein Csa_6G059230 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 4.4e-09
Identity = 49/89 (55.06%), Postives = 58/89 (65.17%), Query Frame = 1


Query: 1  MRSSMAPIVFAVLA-VLILSLGFPSAVDARSS--------RHHRKTLPPPPPPPPPPPPC 60
          M+SSM+ ++FA+L  +L+LS  F S VDA SS        RHHRK LPPPP        C
Sbjct: 1  MKSSMSSLLFAILVTLLLLSSSFLSLVDAHSSPFKNRHRHRHHRKYLPPPPL-------C 60

Query: 61 GK-ATNPSPPPPKFQWPPDFVRKSPPPPF 80
          G  A  P PPPPKFQWPP+ V+KSPPPPF
Sbjct: 61 GTVARPPPPPPPKFQWPPNHVKKSPPPPF 82

The following BLAST results are available for this feature:

BLAST of CmoCh15G006150 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006150 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K8T1_CUCSA	3.1e-09	55.06	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G059230 PE=4 SV=1	[more]

BLAST of CmoCh15G006150 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006150 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190956\|gb\|KGN46160.1\|	4.4e-09	55.06	hypothetical protein Csa_6G059230 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006150.1	CmoCh15G006150.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006150	Cucumber (Gy14) v2	cgybcmoB900
CmoCh15G006150	Silver-seed gourd	carcmoB0092
CmoCh15G006150	Silver-seed gourd	carcmoB1118
CmoCh15G006150	Cucumber (Chinese Long) v3	cmocucB0367
CmoCh15G006150	Watermelon (97103) v2	cmowmbB302
CmoCh15G006150	Watermelon (97103) v2	cmowmbB306
CmoCh15G006150	Wax gourd	cmowgoB0386
CmoCh15G006150	Cucurbita moschata (Rifu)	cmocmoB009
CmoCh15G006150	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G006150	Cucumber (Gy14) v1	cgycmoB0132
CmoCh15G006150	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006150	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006150	Cucumber (Chinese Long) v2	cmocuB305
CmoCh15G006150	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006150	Watermelon (Charleston Gray)	cmowcgB234
CmoCh15G006150	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006150	Watermelon (97103) v1	cmowmB244
CmoCh15G006150	Watermelon (97103) v1	cmowmB250
CmoCh15G006150	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006150	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006150	Cucurbita pepo (Zucchini)	cmocpeB299
CmoCh15G006150	Bottle gourd (USVL1VR-Ls)	cmolsiB262
CmoCh15G006150	Bottle gourd (USVL1VR-Ls)	cmolsiB282