CmoCh15G006130 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G006130
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr15 : 2985673 .. 2985963 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGTATTCGACGGCCAATCTAATGTTTGGTATTTTGGTAGCATCCATCGCTCTAAGGCTGCCGTTGGAAGCCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATTCACCTTCTGGGCAGCTATTATTTCGCCGCCCCATAAAGGTTAGCCTTACAGTGAAGGCTAGTGGAGAAGATGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTGGCAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAG

mRNA sequence

ATGGGGTATTCGACGGCCAATCTAATGTTTGCATCCATCGCTCTAAGGCTGCCGTTGGAAGCCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATTCACCTTCTGGGCAGCTATTATTTCGCCGCCCCATAAAGGTTAGCCTTACAGTGAAGGCTAGTGGAGAAGATGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTGGCAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAG

Coding sequence (CDS)

ATGGGGTATTCGACGGCCAATCTAATGTTTGCATCCATCGCTCTAAGGCTGCCGTTGGAAGCCAGGGCAAGCGCCATGGTTGGCCCTTCTCCTCTGCCACCGCCGACATGCCATTCACCTTCTGGGCAGCTATTATTTCGCCGCCCCATAAAGGTTAGCCTTACAGTGAAGGCTAGTGGAGAAGATGAAGCTGAAGCACCATCGTCCAAGGATGAAAAGGGTGGCAGAAAACCATGGCCAAAGCAACCTGTCCCTAAAGCGCCACCACCTCCATTTTAG

Homology

[Close]

BLAST of CmoCh15G006130 vs. TrEMBL
Match: A0A0A0K9K2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058720 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.6e-09
Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 1  MGYSTANLMF-----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60
          MG STAN++      ASIALRLP E  A A+  P PL  P        L++   +KV L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60

Query: 61 VKA-----SGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF 93
           +A     SG+DE++ P  K+EKG RKPWPK PV K+PPPPF
Sbjct: 61 DEAGSGEGSGDDESDPPL-KEEKGSRKPWPKNPVSKSPPPPF 95

[Close]

BLAST of CmoCh15G006130 vs. NCBI nr
Match: gi|700190954|gb|KGN46158.1| (hypothetical protein Csa_6G058720 [Cucumis sativus])

HSP 1 Score: 68.9 bits (167), Expect = 5.1e-09
Identity = 49/102 (48.04%), Postives = 61/102 (59.80%), Query Frame = 1


Query: 1  MGYSTANLMF-----ASIALRLPLEARASAMVGPSPLPPPTCHSPSGQLLFRRPIKVSLT 60
          MG STAN++      ASIALRLP E  A A+  P PL  P        L++   +KV L 
Sbjct: 1  MGCSTANIVILTIFVASIALRLPTETTARAIADPYPLSWPRL------LIYNTVMKVRLN 60

Query: 61 VKA-----SGEDEAEAPSSKDEKGGRKPWPKQPVPKAPPPPF 93
           +A     SG+DE++ P  K+EKG RKPWPK PV K+PPPPF
Sbjct: 61 DEAGSGEGSGDDESDPPL-KEEKGSRKPWPKNPVSKSPPPPF 95

The following BLAST results are available for this feature:

BLAST of CmoCh15G006130 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006130 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K9K2_CUCSA	3.6e-09	48.04	Uncharacterized protein OS=Cucumis sativus GN=Csa_6G058720 PE=4 SV=1	[more]

BLAST of CmoCh15G006130 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G006130 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700190954\|gb\|KGN46158.1\|	5.1e-09	48.04	hypothetical protein Csa_6G058720 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G006130.1	CmoCh15G006130.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G006130	Cp4.1LG13g04170	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G006130	CsaV3_6G005400	Cucumber (Chinese Long) v3	cmocucB0359

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G006130	Watermelon (97103) v2	cmowmbB302
CmoCh15G006130	Watermelon (97103) v2	cmowmbB306
CmoCh15G006130	Wax gourd	cmowgoB0386
CmoCh15G006130	Cucurbita moschata (Rifu)	cmocmoB009
CmoCh15G006130	Cucurbita moschata (Rifu)	cmocmoB262
CmoCh15G006130	Cucumber (Gy14) v1	cgycmoB0132
CmoCh15G006130	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G006130	Cucurbita maxima (Rimu)	cmacmoB693
CmoCh15G006130	Cucumber (Chinese Long) v2	cmocuB305
CmoCh15G006130	Melon (DHL92) v3.5.1	cmomeB259
CmoCh15G006130	Watermelon (Charleston Gray)	cmowcgB234
CmoCh15G006130	Watermelon (Charleston Gray)	cmowcgB265
CmoCh15G006130	Watermelon (97103) v1	cmowmB244
CmoCh15G006130	Watermelon (97103) v1	cmowmB250
CmoCh15G006130	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G006130	Cucurbita pepo (Zucchini)	cmocpeB299
CmoCh15G006130	Bottle gourd (USVL1VR-Ls)	cmolsiB262
CmoCh15G006130	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G006130	Cucumber (Gy14) v2	cgybcmoB900
CmoCh15G006130	Silver-seed gourd	carcmoB0092
CmoCh15G006130	Silver-seed gourd	carcmoB1118
CmoCh15G006130	Cucumber (Chinese Long) v3	cmocucB0367