CmoCh15G005220 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G005220
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Protein SUPPRESSOR OF GENE SILENCING 3
Location	Cmo_Chr15 : 2444505 .. 2445490 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGACAAAGGATGACGGATCAGAAACCTTTGGCTTTGAAAAAGGGCACCGCAATGGATATCGGTCGTACATCAATTTATACAGACTTCTTACCATTTTCCCAGGGTTTTGATGTGCGAATTCAATGAAAGACTCAACTTTTGAAACCATGTAGTTTAGGATAAACCTCAAGTCTCATGTTCACTTGAATTTGAAGAAAGCTGGAGGTTTAATTTAAGGAATATTGGATATTCTACCAAGGAAGTGAGAGCTCTTCGTCAGGACACTGTAATATGGGTTCCTGAGATCTTGCCAAAGGAAGAAGCAGTGGTTCACAAGGAGGATCTTATCATCTGGCCTCCTGTTATTATCGTCTGCAACATTTTTCTGTCACACAGCAATCCCGATAAGCGGAGAGTTGTAACGATTGAAGCTCTCGAGTCTTTCTTAAGAAGTAAGTGACATTTTATACTTCAAAATTATAGTGTTGATTAATATTTGACTGAATCTTCCTCAAATAAGAAAAAAAAAAGGGAGACAATTAGGTCCATAGATCCGACTAATGTTGTTTAAAGTTTACTTCTATCTCAGAGCATATCTAATGTTCCCATTTAAGGTAAATCTATGTGAAAGCATGTCTAATGTTCTCACTTGAAAGTAAAGTCTTTAGGTTGCGCCTGCAGATTTTGAATTGGCATTATGGTATGTAAGTTATTTTGTTATTCGGTTAAGGCGTTGGCCCTCGATTAAGAAATCCGTGGTTCCAATCCCCACACAACTTATTGGACTTGAGAAAAAAAATATATTTTGTTATGCAAAGGTCTGAAAGCATTAACGTGCTGTTGAATGACAGGTAAAAATCTGCTGAGGGGAAGAGTGAAGATGAATTTGAGGGTGTCCTGCAGATGGAAGTGTAATGGTGTTGAAGTTCCTGCCCACCGTTTCTGGTTGACGGATGCAGAAAGATTCGACAATTCTTTTCTGAAAGGAGAGGTGGAAGAGTGA

mRNA sequence

ATGTGGACAAAGGATGACGGATCAGAAACCTTTGGCTTTGAAAAAGGGCACCGCAATGGATATCGGTCGTACATCAATTTATACAGACTTCTTACCATTTTCCCAGGGAATATTGGATATTCTACCAAGGAAGTGAGAGCTCTTCGTCAGGACACTGTAATATGGGTTCCTGAGATCTTGCCAAAGGAAGAAGCAGTGGTTCACAAGGAGGATCTTATCATCTGGCCTCCTGTTATTATCGTCTGCAACATTTTTCTGTCACACAGCAATCCCGATAAGCGGAGAGTTGTAACGATTGAAGCTCTCGAGTCTTTCTTAAGAAGTAAAAATCTGCTGAGGGGAAGAGTGAAGATGAATTTGAGGGTGTCCTGCAGATGGAAGTGTAATGGTGTTGAAGTTCCTGCCCACCGTTTCTGGTTGACGGATGCAGAAAGATTCGACAATTCTTTTCTGAAAGGAGAGGTGGAAGAGTGA

Coding sequence (CDS)

ATGTGGACAAAGGATGACGGATCAGAAACCTTTGGCTTTGAAAAAGGGCACCGCAATGGATATCGGTCGTACATCAATTTATACAGACTTCTTACCATTTTCCCAGGGAATATTGGATATTCTACCAAGGAAGTGAGAGCTCTTCGTCAGGACACTGTAATATGGGTTCCTGAGATCTTGCCAAAGGAAGAAGCAGTGGTTCACAAGGAGGATCTTATCATCTGGCCTCCTGTTATTATCGTCTGCAACATTTTTCTGTCACACAGCAATCCCGATAAGCGGAGAGTTGTAACGATTGAAGCTCTCGAGTCTTTCTTAAGAAGTAAAAATCTGCTGAGGGGAAGAGTGAAGATGAATTTGAGGGTGTCCTGCAGATGGAAGTGTAATGGTGTTGAAGTTCCTGCCCACCGTTTCTGGTTGACGGATGCAGAAAGATTCGACAATTCTTTTCTGAAAGGAGAGGTGGAAGAGTGA

Homology

[Close]

BLAST of CmoCh15G005220 vs. TrEMBL
Match: W9SEY8_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_016775 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 2.4e-21
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L+R +++    +G+ST     +  DT+ WVP++LPKEEA+  KEDLI+W
Sbjct: 823 HKAGLRAEHLGLHRAISVL---LGWST----VVPDDTITWVPQVLPKEEALAQKEDLILW 882

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNL 121
           PPVII+ NI LSH+NP+K +VVT+EALE+F+R K L+RGR+K+ L
Sbjct: 883 PPVIIIHNISLSHNNPEKWKVVTMEALEAFIRGKGLIRGRIKVVL 920

[Close]

BLAST of CmoCh15G005220 vs. TrEMBL
Match: K7LKH7_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_10G202800 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 44/105 (41.90%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L++ + +    +G+ T     + QDTV WVP++LP+ EA+  KEDLI+W
Sbjct: 772 HKTGLRAKHLGLHKAICVL---MGWDT----VVPQDTVTWVPQVLPQAEALAQKEDLILW 831

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNL 121
           PP++I+ NI +S  NP   +VV++E +E+FLR K  +RGR+K+ L
Sbjct: 832 PPIVIIHNISMSDDNPQNWKVVSMETIEAFLRGKGFVRGRIKLCL 869

[Close]

BLAST of CmoCh15G005220 vs. TrEMBL
Match: A0A0B2RXW3_GLYSO (Protein SUPPRESSOR OF GENE SILENCING 3 OS=Glycine soja GN=glysoja_016964 PE=4 SV=1)

HSP 1 Score: 92.8 bits (229), Expect = 3.9e-16
Identity = 44/105 (41.90%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L++ + +    +G+ T     + QDTV WVP++LP+ EA+  KEDLI+W
Sbjct: 772 HKTGLRAKHLGLHKAICVL---MGWDT----VVPQDTVTWVPQVLPQAEALAQKEDLILW 831

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNL 121
           PP++I+ NI +S  NP   +VV++E +E+FLR K  +RGR+K+ L
Sbjct: 832 PPIVIIHNISMSDDNPQNWKVVSMETIEAFLRGKGFVRGRIKLCL 869

[Close]

BLAST of CmoCh15G005220 vs. TrEMBL
Match: A0A0B2NZM0_GLYSO (Uncharacterized protein OS=Glycine soja GN=glysoja_000580 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 44/105 (41.90%), Postives = 71/105 (67.62%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L++ + +    +G+ T     + QDTV WVP++LP+ EA+  KEDLI+W
Sbjct: 773 HKAGLRAKHLGLHKAVCVL---MGWDT----VVPQDTVTWVPQVLPQAEALAQKEDLILW 832

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNL 121
           PP++I+ NI +S  NP   +VV++E +E FLR K  +RGR+K+ L
Sbjct: 833 PPIVIIHNISMSDDNPQNWKVVSMETIEGFLRGKGFVRGRIKLCL 870

[Close]

BLAST of CmoCh15G005220 vs. TrEMBL
Match: I1NHN1_SOYBN (Uncharacterized protein OS=Glycine max GN=GLYMA_20G187500 PE=4 SV=2)

HSP 1 Score: 91.3 bits (225), Expect = 1.1e-15
Identity = 44/105 (41.90%), Postives = 71/105 (67.62%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L++ + +    +G+ T     + QDTV WVP++LP+ EA+  KEDLI+W
Sbjct: 773 HKAGLRAKHLGLHKAVCVL---MGWDT----VVPQDTVTWVPQVLPQAEALAQKEDLILW 832

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNL 121
           PP++I+ NI +S  NP   +VV++E +E FLR K  +RGR+K+ L
Sbjct: 833 PPIVIIHNISMSDDNPQNWKVVSMETIEGFLRGKGFVRGRIKLCL 870

[Close]

BLAST of CmoCh15G005220 vs. NCBI nr
Match: gi|659113461|ref|XP_008456586.1| (PREDICTED: uncharacterized protein LOC103496499 [Cucumis melo])

HSP 1 Score: 122.9 bits (307), Expect = 5.1e-25
Identity = 65/101 (64.36%), Postives = 75/101 (74.26%), Query Frame = 1


Query: 50  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSK 109
           QDTV WVPE+L KEEAV+ KEDLIIWPPVIIV N+ LSH++PDK RVVTIEALESFLRSK
Sbjct: 779 QDTVTWVPEVLSKEEAVLQKEDLIIWPPVIIVRNVSLSHNSPDKWRVVTIEALESFLRSK 838

Query: 110 NLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERFDNSF 151
           NLL+GRVKM+L          ++       LTDAER +  F
Sbjct: 839 NLLKGRVKMSLGCPADQSVMALKFLPTFSGLTDAERLNKFF 879

[Close]

BLAST of CmoCh15G005220 vs. NCBI nr
Match: gi|778710369|ref|XP_011656567.1| (PREDICTED: uncharacterized protein LOC101208223 [Cucumis sativus])

HSP 1 Score: 122.1 bits (305), Expect = 8.7e-25
Identity = 66/101 (65.35%), Postives = 74/101 (73.27%), Query Frame = 1


Query: 50  QDTVIWVPEILPKEEAVVHKEDLIIWPPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSK 109
           QDTV WVPE+L KEEAVV KEDLIIWPPVII+ NI LSH++PDK RVVTIEALESFLRSK
Sbjct: 779 QDTVTWVPEVLSKEEAVVQKEDLIIWPPVIIIRNISLSHNSPDKWRVVTIEALESFLRSK 838

Query: 110 NLLRGRVKMNLRVSCRWKCNGVEVPAHRFWLTDAERFDNSF 151
           NLL+GRVKM+L          ++       LTDAER    F
Sbjct: 839 NLLKGRVKMSLGCPADQSVMVLKFLPTFSGLTDAERLHKFF 879

[Close]

BLAST of CmoCh15G005220 vs. NCBI nr
Match: gi|703151576|ref|XP_010110155.1| (hypothetical protein L484_016775 [Morus notabilis])

HSP 1 Score: 110.2 bits (274), Expect = 3.4e-21
Identity = 54/105 (51.43%), Postives = 80/105 (76.19%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L+R +++    +G+ST     +  DT+ WVP++LPKEEA+  KEDLI+W
Sbjct: 823 HKAGLRAEHLGLHRAISVL---LGWST----VVPDDTITWVPQVLPKEEALAQKEDLILW 882

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNL 121
           PPVII+ NI LSH+NP+K +VVT+EALE+F+R K L+RGR+K+ L
Sbjct: 883 PPVIIIHNISLSHNNPEKWKVVTMEALEAFIRGKGLIRGRIKVVL 920

[Close]

BLAST of CmoCh15G005220 vs. NCBI nr
Match: gi|645252120|ref|XP_008231977.1| (PREDICTED: uncharacterized protein LOC103331149 [Prunus mume])

HSP 1 Score: 101.7 bits (252), Expect = 1.2e-18
Identity = 61/135 (45.19%), Postives = 81/135 (60.00%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           H+ G R+ ++ L + + +    +G+ST     +  DTV WVP ILPK EA+  KEDLI+W
Sbjct: 793 HKVGLRAQHLGLLKAVCVL---LGWST----VVPSDTVTWVPHILPKAEALAQKEDLILW 852

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPA 136
           PPVIIV NI +S +NP   +VVTIEALE+FLR K L++GR+KM L          V+   
Sbjct: 853 PPVIIVHNISMSDNNPQNWKVVTIEALEAFLRGKGLIKGRIKMCLGKPADQSMLVVKFLG 912

Query: 137 HRFWLTDAERFDNSF 151
               L DAER    F
Sbjct: 913 TFTGLGDAERIHKHF 920

[Close]

BLAST of CmoCh15G005220 vs. NCBI nr
Match: gi|658038504|ref|XP_008354820.1| (PREDICTED: uncharacterized protein LOC103418471 [Malus domestica])

HSP 1 Score: 99.0 bits (245), Expect = 7.9e-18
Identity = 57/139 (41.01%), Postives = 83/139 (59.71%), Query Frame = 1


Query: 17  HRNGYRS-YINLYRLLTIFPGNIGYSTKEVRALRQDTVIWVPEILPKEEAVVHKEDLIIW 76
           HR G R+ ++ L + + +    +G+ST     +  DTV W P++LPK EA+  KEDLI+W
Sbjct: 676 HRVGLRAQHLGLLKAVCVL---LGWST----VVPPDTVTWAPQVLPKAEALAQKEDLILW 735

Query: 77  PPVIIVCNIFLSHSNPDKRRVVTIEALESFLRSKNLLRGRVKMNLRVSCRWKCNGVEVPA 136
           PPVI+V NI +S +NP   +VV++EALE+FLRS  L++GR+K+ L          V+   
Sbjct: 736 PPVIVVHNISMSDNNPQSWKVVSMEALEAFLRSNGLIKGRIKICLGKPADQSVLXVKFLG 795

Query: 137 HRFWLTDAERFDNSFLKGE 155
               L DAER    F + E
Sbjct: 796 TFTGLGDAERIQKHFAEHE 807

The following BLAST results are available for this feature:

BLAST of CmoCh15G005220 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh15G005220 vs. TrEMBL


Match Name	E-value	Identity	Description
W9SEY8_9ROSA	2.4e-21	51.43	Uncharacterized protein OS=Morus notabilis GN=L484_016775 PE=4 SV=1	[more]
K7LKH7_SOYBN	3.9e-16	41.90	Uncharacterized protein OS=Glycine max GN=GLYMA_10G202800 PE=4 SV=1	[more]
A0A0B2RXW3_GLYSO	3.9e-16	41.90	Protein SUPPRESSOR OF GENE SILENCING 3 OS=Glycine soja GN=glysoja_016964 PE=4 SV...	[more]
A0A0B2NZM0_GLYSO	1.1e-15	41.90	Uncharacterized protein OS=Glycine soja GN=glysoja_000580 PE=4 SV=1	[more]
I1NHN1_SOYBN	1.1e-15	41.90	Uncharacterized protein OS=Glycine max GN=GLYMA_20G187500 PE=4 SV=2	[more]

BLAST of CmoCh15G005220 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh15G005220 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659113461\|ref\|XP_008456586.1\|	5.1e-25	64.36	PREDICTED: uncharacterized protein LOC103496499 [Cucumis melo]	[more]
gi\|778710369\|ref\|XP_011656567.1\|	8.7e-25	65.35	PREDICTED: uncharacterized protein LOC101208223 [Cucumis sativus]	[more]
gi\|703151576\|ref\|XP_010110155.1\|	3.4e-21	51.43	hypothetical protein L484_016775 [Morus notabilis]	[more]
gi\|645252120\|ref\|XP_008231977.1\|	1.2e-18	45.19	PREDICTED: uncharacterized protein LOC103331149 [Prunus mume]	[more]
gi\|658038504\|ref\|XP_008354820.1\|	7.9e-18	41.01	PREDICTED: uncharacterized protein LOC103418471 [Malus domestica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
biological_process	GO:0031047	gene silencing by RNA
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G005220.1	CmoCh15G005220.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR21596	RIBONUCLEASE P SUBUNIT P38	coord: 50..120 score: 4.2
None	No IPR available	PANTHER	PTHR21596:SF14	SUBFAMILY NOT NAMED	coord: 50..120 score: 4.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G005220	CmaCh15G005130	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G005220	Cla013703	Watermelon (97103) v1	cmowmB248
CmoCh15G005220	MELO3C019889	Melon (DHL92) v3.5.1	cmomeB262
CmoCh15G005220	ClCG08G008160	Watermelon (Charleston Gray)	cmowcgB263
CmoCh15G005220	CSPI06G03860	Wild cucumber (PI 183967)	cmocpiB306
CmoCh15G005220	Lsi08G006530	Bottle gourd (USVL1VR-Ls)	cmolsiB282
CmoCh15G005220	Cp4.1LG01g24820	Cucurbita pepo (Zucchini)	cmocpeB280
CmoCh15G005220	Cp4.1LG13g10420	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G005220	MELO3C019889.2	Melon (DHL92) v3.6.1	cmomedB297
CmoCh15G005220	CsaV3_6G004130	Cucumber (Chinese Long) v3	cmocucB0359
CmoCh15G005220	Cla97C08G150920	Watermelon (97103) v2	cmowmbB300
CmoCh15G005220	Bhi04G001333	Wax gourd	cmowgoB0393
CmoCh15G005220	CsGy6G003830	Cucumber (Gy14) v2	cgybcmoB721
CmoCh15G005220	Carg01685	Silver-seed gourd	carcmoB1118
CmoCh15G005220	Carg04611	Silver-seed gourd	carcmoB0936

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh15G005220	CmoCh04G026460	Cucurbita moschata (Rifu)	cmocmoB262

The following block(s) are covering this gene:

None