CmoCh15G004290 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh15G004290
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr15 : 1942466 .. 1942933 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
GGTGAGGGGCCGACGTAAGAAACGTGGCTGAGCGAAGGCGCGAACACAGCGGATAGGCAATCCAAGAACAGAACCAGAAGATAAGTTCATCTCACATTAACGAAGCACACGCTTCAGAAGCAAAGGATCTTCAATGGCGTCTCTGCATTGCTTACCCCCTGTCCAGAAGTCTCTCTTCATCAATTCTCTTTCTCAGGTTCACATTTCCTTCAAAATCAATCCAATTTTGGCTTCTGTTTTCTTCCTGTCATTCGTTCTGATTAACGATCAATTATCTTTTTTCGCTCGCAGAAACTCCATGGAAGATCTGTTTGCTGCAGAGCGGGGATTTCATTTCTTGTAAGGGCTGAGCGAGCACGCGGATCTTCAGTTAATGGCCATGCGTGCAGTTCCGAAGGTCAGTTTACCAAATTGAGATGGAAAATCAGGTTTCATATGAATTTGAGTACTGATTATACTGGAATTTAG

mRNA sequence

GGTGAGGGGCCGACGTAAGAAACGTGGCTGAGCGAAGGCGCGAACACAGCGGATAGGCAATCCAAGAACAGAACCAGAAGATAAGTTCATCTCACATTAACGAAGCACACGCTTCAGAAGCAAAGGATCTTCAATGGCGTCTCTGCATTGCTTACCCCCTGTCCAGAAGTCTCTCTTCATCAATTCTCTTTCTCAGAAACTCCATGGAAGATCTGTTTGCTGCAGAGCGGGGATTTCATTTCTTGTAAGGGCTGAGCGAGCACGCGGATCTTCAGTTAATGGCCATGCGTGCAGTTCCGAAGGTCAGTTTACCAAATTGAGATGGAAAATCAGGTTTCATATGAATTTGAGTACTGATTATACTGGAATTTAG

Coding sequence (CDS)

ATGGCGTCTCTGCATTGCTTACCCCCTGTCCAGAAGTCTCTCTTCATCAATTCTCTTTCTCAGAAACTCCATGGAAGATCTGTTTGCTGCAGAGCGGGGATTTCATTTCTTGTAAGGGCTGAGCGAGCACGCGGATCTTCAGTTAATGGCCATGCGTGCAGTTCCGAAGGTCAGTTTACCAAATTGAGATGGAAAATCAGGTTTCATATGAATTTGAGTACTGATTATACTGGAATTTAG
Homology
[Close]
BLAST of CmoCh15G004290 vs. TrEMBL
Match: A0A0A0KS54_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505230 PE=4 SV=1)

HSP 1 Score: 84.7 bits (208), Expect = 5.4e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 10 VQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          +Q SLFINSL QKLHGR VCCRAG+SFLVRAE+A GSS+NGHACSSE
Sbjct: 4  LQNSLFINSLPQKLHGRFVCCRAGVSFLVRAEQAHGSSINGHACSSE 50

[Close]
BLAST of CmoCh15G004290 vs. NCBI nr
Match: gi|449464194|ref|XP_004149814.1| (PREDICTED: psbP-like protein 1, chloroplastic [Cucumis sativus])

HSP 1 Score: 84.7 bits (208), Expect = 7.8e-14
Identity = 39/47 (82.98%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 10 VQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          +Q SLFINSL QKLHGR VCCRAG+SFLVRAE+A GSS+NGHACSSE
Sbjct: 4  LQNSLFINSLPQKLHGRFVCCRAGVSFLVRAEQAHGSSINGHACSSE 50

[Close]
BLAST of CmoCh15G004290 vs. NCBI nr
Match: gi|659127081|ref|XP_008463515.1| (PREDICTED: psbP-like protein 1, chloroplastic [Cucumis melo])

HSP 1 Score: 84.0 bits (206), Expect = 1.3e-13
Identity = 38/47 (80.85%), Postives = 43/47 (91.49%), Query Frame = 1 

Query: 10 VQKSLFINSLSQKLHGRSVCCRAGISFLVRAERARGSSVNGHACSSE 57
          +Q SLF+NSL QKLHGR VCCRAG+SFLVRAE+A GSS+NGHACSSE
Sbjct: 4  LQNSLFLNSLPQKLHGRFVCCRAGVSFLVRAEQAHGSSINGHACSSE 50

The following BLAST results are available for this feature:
BLAST of CmoCh15G004290 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh15G004290 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KS54_CUCSA5.4e-1482.98Uncharacterized protein OS=Cucumis sativus GN=Csa_5G505230 PE=4 SV=1[more]
BLAST of CmoCh15G004290 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh15G004290 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449464194|ref|XP_004149814.1|7.8e-1482.98PREDICTED: psbP-like protein 1, chloroplastic [Cucumis sativus][more]
gi|659127081|ref|XP_008463515.1|1.3e-1380.85PREDICTED: psbP-like protein 1, chloroplastic [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
cellular_component GO:0019898 extrinsic component of membrane
cellular_component GO:0009654 photosystem II oxygen evolving complex
molecular_function GO:0005509 calcium ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh15G004290.1CmoCh15G004290.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh15G004290ClCG09G020230Watermelon (Charleston Gray)cmowcgB233
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh15G004290Silver-seed gourdcarcmoB0362
CmoCh15G004290Silver-seed gourdcarcmoB0916
CmoCh15G004290Silver-seed gourdcarcmoB0936
CmoCh15G004290Cucumber (Chinese Long) v3cmocucB0335
CmoCh15G004290Cucumber (Chinese Long) v3cmocucB0349
CmoCh15G004290Cucumber (Chinese Long) v3cmocucB0357
CmoCh15G004290Watermelon (97103) v2cmowmbB284
CmoCh15G004290Watermelon (97103) v2cmowmbB305
CmoCh15G004290Wax gourdcmowgoB0376
CmoCh15G004290Wax gourdcmowgoB0378
CmoCh15G004290Wax gourdcmowgoB0399
CmoCh15G004290Cucurbita moschata (Rifu)cmocmoB252
CmoCh15G004290Cucurbita moschata (Rifu)cmocmoB258
CmoCh15G004290Cucurbita moschata (Rifu)cmocmoB259
CmoCh15G004290Cucurbita moschata (Rifu)cmocmoB260
CmoCh15G004290Cucurbita moschata (Rifu)cmocmoB261
CmoCh15G004290Cucumber (Gy14) v1cgycmoB0466
CmoCh15G004290Cucurbita maxima (Rimu)cmacmoB287
CmoCh15G004290Cucurbita maxima (Rimu)cmacmoB688
CmoCh15G004290Cucurbita maxima (Rimu)cmacmoB689
CmoCh15G004290Cucurbita maxima (Rimu)cmacmoB692
CmoCh15G004290Wild cucumber (PI 183967)cmocpiB304
CmoCh15G004290Wild cucumber (PI 183967)cmocpiB297
CmoCh15G004290Cucumber (Chinese Long) v2cmocuB295
CmoCh15G004290Cucumber (Chinese Long) v2cmocuB288
CmoCh15G004290Melon (DHL92) v3.5.1cmomeB239
CmoCh15G004290Watermelon (97103) v1cmowmB243
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB288
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB266
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB268
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB276
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB277
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB278
CmoCh15G004290Cucurbita pepo (Zucchini)cmocpeB279
CmoCh15G004290Bottle gourd (USVL1VR-Ls)cmolsiB260
CmoCh15G004290Bottle gourd (USVL1VR-Ls)cmolsiB261
CmoCh15G004290Bottle gourd (USVL1VR-Ls)cmolsiB273
CmoCh15G004290Cucumber (Gy14) v2cgybcmoB462
CmoCh15G004290Cucumber (Gy14) v2cgybcmoB585
CmoCh15G004290Cucumber (Gy14) v2cgybcmoB592
CmoCh15G004290Melon (DHL92) v3.6.1cmomedB271
CmoCh15G004290Melon (DHL92) v3.6.1cmomedB289
CmoCh15G004290Melon (DHL92) v3.6.1cmomedB310