CmoCh15G003390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh15G003390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Ring finger protein, putative
Location	Cmo_Chr15 : 1581401 .. 1582376 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGCTTATCGTATCCCTGATACTCATACTTCTGGGAATTGCCATTTTGGTGTTGATTAACGTGTGGATAGTTGGGAGAGCATTGAGGGGAGGGTTTGAAAATGAAACGACGACTGTGGGAAGAAGCAACAACAATAACGGGGAAGCAACAGGCTGCATGCGCAGAGATGACTTGGAGAAGCTTCCTTGCTTTCAATATATGGCTATGGAGGAACCAATGGGCAGCCCTGTGGATTGTGCAGTTTGCTTGGGGAAATTCCAGATGGGCGAGAAGTGCAGGCTGTTGCCTATTTGCAAGCACAGCTTCCACGCTCAGTGCGTTGATGAGTGGCTTTTGCTGACTCCTGCTTGCCCCATTTGTCGAACAAGCACTCTTGAGTCTCTAAAAGGAGCTGATGTAGATGAAAGATCATGAACGATAACGTTTCAACCGTTTGGTGAGTCGAAAATCAAACCCTTCTAATGATAGTTAGTATCTTCAACACTACTTGAGTTATGTTTTCGGCTCGAAAATACTCGTTAATCAGCACTTCATATGACTTAGGCAAGAGCACATTTTATTCTTTTGACGAAAAGAAAACGGTGAAGAACACGTGTTATGTCGTAGAATCAATAAGGCTTAAAAATGTTAGAACATGATTGAATTCATTGTATTTGAACTGATGCGTCCCTGCTTAAGCTTATATAATTGCTGTTTGTTAATGACTCTAATTCTTTCTTTGTTGGTGAAGAACAAAGAGAACTGCTGGTTTGTTCCTCTCCCCACCTGACCAATGAAACAGGGAAGGCATTAAATGAGGGCTGCCATAGAAAGATGACAAAAGGGCTGGCTAGAAGTCACTGCTGGCCATGGTGGCTGTCTGGCTGGCTGCCTGGCTGCCTTCCAACCTCGAACTCATCAGCTCATCAGCTCATCAGGAATAAGTACTCCAAAGCCAAAGAGTAAAGACAGAGACACAGCCAAGAAATACTGA

mRNA sequence

ATGGAGCTTATCGTATCCCTGATACTCATACTTCTGGGAATTGCCATTTTGGTGTTGATTAACGTGTGGATAGTTGGGAGAGCATTGAGGGGAGGGTTTGAAAATGAAACGACGACTGTGGGAAGAAGCAACAACAATAACGGGGAAGCAACAGGCTGCATGCGCAGAGATGACTTGGAGAAGCTTCCTTGCTTTCAATATATGGCTATGGAGGAACCAATGGGCAGCCCTGTGGATTGTGCAGTTTGCTTGGGGAAATTCCAGATGGGCGAGAAGTGCAGGCTGTTGCCTATTTGCAAGCACAGCTTCCACGCTCAGTGCGTTGATGAGTGGCTTTTGCTGACTCCTGCTTGCCCCATTTGTCGAACAAGCACTCTTGAGTCTCTAAAAGGAGCTGATGGCTGGCTAGAAGTCACTGCTGGCCATGGTGGCTGTCTGGCTGGCTGCCTGGCTGCCTTCCAACCTCGAACTCATCAGCTCATCAGCTCATCAGGAATAAGTACTCCAAAGCCAAAGAGTAAAGACAGAGACACAGCCAAGAAATACTGA

Coding sequence (CDS)

ATGGAGCTTATCGTATCCCTGATACTCATACTTCTGGGAATTGCCATTTTGGTGTTGATTAACGTGTGGATAGTTGGGAGAGCATTGAGGGGAGGGTTTGAAAATGAAACGACGACTGTGGGAAGAAGCAACAACAATAACGGGGAAGCAACAGGCTGCATGCGCAGAGATGACTTGGAGAAGCTTCCTTGCTTTCAATATATGGCTATGGAGGAACCAATGGGCAGCCCTGTGGATTGTGCAGTTTGCTTGGGGAAATTCCAGATGGGCGAGAAGTGCAGGCTGTTGCCTATTTGCAAGCACAGCTTCCACGCTCAGTGCGTTGATGAGTGGCTTTTGCTGACTCCTGCTTGCCCCATTTGTCGAACAAGCACTCTTGAGTCTCTAAAAGGAGCTGATGGCTGGCTAGAAGTCACTGCTGGCCATGGTGGCTGTCTGGCTGGCTGCCTGGCTGCCTTCCAACCTCGAACTCATCAGCTCATCAGCTCATCAGGAATAAGTACTCCAAAGCCAAAGAGTAAAGACAGAGACACAGCCAAGAAATACTGA

Homology

[Close]

BLAST of CmoCh15G003390 vs. Swiss-Prot
Match: ATL48_ARATH (RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2)

HSP 1 Score: 78.6 bits (192), Expect = 8.0e-14
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 59  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 118
           ++ LP F Y  +   +  P DCAVCL +F   +K RLLP+C H+FH  C+D WLL    C
Sbjct: 186 IDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTC 245

Query: 119 PICRTS 125
           P+CR S
Sbjct: 246 PLCRRS 251

[Close]

BLAST of CmoCh15G003390 vs. Swiss-Prot
Match: ATL43_ARATH (RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2 SV=2)

HSP 1 Score: 73.6 bits (179), Expect = 2.6e-12
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 31  GGFENETTTVGRSNNNNGEATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 90
           GG+ N    VG   N+       + R  +E LP F++ A+       ++CAVCL +F+  
Sbjct: 104 GGYYNGGGVVGGRKNSG------IDRSVIESLPVFRFGALSGHKDG-LECAVCLARFEPT 163

Query: 91  EKCRLLPICKHSFHAQCVDEWLLLTPACPICR 123
           E  RLLP CKH+FH +CVD WL     CP+CR
Sbjct: 164 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 188

[Close]

BLAST of CmoCh15G003390 vs. Swiss-Prot
Match: ATL47_ARATH (RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.4e-12
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 59  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 118
           ++ LP F Y  ++     P DCAVCL +F   +K RLLP C H+FH  C+D WLL    C
Sbjct: 124 IDALPVFLYKEIKGTK-EPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTC 183

Query: 119 PICRTSTLESL 130
           P+CR  TL SL
Sbjct: 184 PLCR-GTLFSL 192

[Close]

BLAST of CmoCh15G003390 vs. Swiss-Prot
Match: ATL13_ARATH (RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2)

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-12
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 1


Query: 3   LIVSLILILLGIA-ILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLEK 62
           +I+S+I  + G+  +LV   +    R     F+N T   G+           + +  ++ 
Sbjct: 56  IILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDT 115

Query: 63  LPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPIC 122
           LP F Y ++      P DCAVCL +F+  +K RLLP C H+FH  C+D WLL    CP+C
Sbjct: 116 LPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLC 175

Query: 123 RTSTLESL 130
           R+S L  L
Sbjct: 176 RSSLLSDL 183

[Close]

BLAST of CmoCh15G003390 vs. Swiss-Prot
Match: ATL72_ARATH (RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 5.7e-12
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 34  ENETTTVGRSNNNNGE---ATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 93
           +++ +    +N N G    ATG +++  L+++P   Y +    M +  +C +CLG F+ G
Sbjct: 67  DDQVSNASNANANLGRLAAATG-LKKQALKQIPVGLYGSGIIDMKA-TECLICLGDFEDG 126

Query: 94  EKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTL 127
           EK R+LP C H FH +C+D WLL   +CP CR S L
Sbjct: 127 EKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of CmoCh15G003390 vs. TrEMBL
Match: M5WUQ4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016567mg PE=4 SV=1)

HSP 1 Score: 149.8 bits (377), Expect = 3.2e-33
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +  S+IL+ +GI  L+L++VWIVGRA R G     + V  +++  G A+  M +DDLE
Sbjct: 1   MAIFFSVILLFVGIGFLILVHVWIVGRAFRRGGFGNGSMVAMASSTGGTAS--MSKDDLE 60

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLP F Y+A  +  GSPVDCAVCL  F+MGEKCRLLP+CKHSFHAQCVD WLL TP CPI
Sbjct: 61  KLPSFDYVANWDKPGSPVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLRTPICPI 120

Query: 121 CRTSTLESLK 131
           CR+ T E  K
Sbjct: 121 CRSRTAEPQK 128

[Close]

BLAST of CmoCh15G003390 vs. TrEMBL
Match: W9SX80_9ROSA (RING-H2 finger protein ATL47 OS=Morus notabilis GN=L484_008417 PE=4 SV=1)

HSP 1 Score: 145.2 bits (365), Expect = 7.8e-32
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGC--MRRDD 60
           M +I+S+I + +GI +L+ ++V IVGRA R GF N +  + R +N + + TG   M +DD
Sbjct: 16  MAIILSIIFLFVGIGLLIFVHVCIVGRAFRRGFGNVSVAMERGSNGS-DITGSTSMSKDD 75

Query: 61  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 120
           LEKLPCF YM  ++   SPVDCAVCL  FQ+GEKCRLLPICKHSFHA+CVD WLL  P C
Sbjct: 76  LEKLPCFDYMT-KDTATSPVDCAVCLESFQVGEKCRLLPICKHSFHAECVDAWLLQAPFC 135

Query: 121 PICRTSTLESLKGA 133
           P+CRTS  +S KG+
Sbjct: 136 PMCRTSA-DSSKGS 146

[Close]

BLAST of CmoCh15G003390 vs. TrEMBL
Match: W1P7Q1_AMBTC (Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00006p00267830 PE=4 SV=1)

HSP 1 Score: 143.7 bits (361), Expect = 2.3e-31
Identity = 77/134 (57.46%), Postives = 98/134 (73.13%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +++S+IL+ +GI +LVLI+V IVGRALR G       + RSN N+G ++G + R+DL+
Sbjct: 16  MAIVISVILLFVGIGVLVLIHVCIVGRALRSGM-----IIARSNVNSGNSSG-ISREDLQ 75

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           +LPCF Y   ++  G P+DCAVCL  FQ G+KCRLLPICKHSFHAQCVD WLL  P CPI
Sbjct: 76  RLPCFDYKTGDKEKG-PIDCAVCLDGFQGGDKCRLLPICKHSFHAQCVDSWLLKAPICPI 135

Query: 121 CRTSTLESLKGADG 135
           CRTS   S K A+G
Sbjct: 136 CRTSVCLS-KVAEG 141

[Close]

BLAST of CmoCh15G003390 vs. TrEMBL
Match: A0A067K4P7_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11493 PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 2.5e-30
Identity = 64/123 (52.03%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           ME++VS+IL+ +GI ILV+I+++IVGRA R G+EN    V    +NNG     + ++DL+
Sbjct: 3   MEILVSVILLFVGIIILVVIHIYIVGRAFRSGYENGQIMVPGLTSNNGSKK--ISKEDLK 62

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
            LPCF Y   E+   SPV+C +CLG F +G+KCRLLP C HSFH+QC+D WL++ P CP+
Sbjct: 63  NLPCFDYKVAEKGESSPVECVICLGNFNVGDKCRLLPNCNHSFHSQCIDSWLVMAPICPV 122

Query: 121 CRT 124
           CRT
Sbjct: 123 CRT 123

[Close]

BLAST of CmoCh15G003390 vs. TrEMBL
Match: A0A061ECH9_THECC (UDP-Glycosyltransferase superfamily protein, putative OS=Theobroma cacao GN=TCM_016860 PE=4 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 9.5e-30
Identity = 76/156 (48.72%), Postives = 99/156 (63.46%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M + +++IL+ +G+ +LV+I+V IVGRA RGG  N      RSN+ N     CM +DDL+
Sbjct: 15  MAIFIAVILLFIGVGMLVVIHVCIVGRAFRGGLRNPGR-FDRSNSRNR----CMSQDDLQ 74

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           K+PC+ Y+A ++   SPVDCAVCL  F+MGEKCRLLP+C+HSFHA CVD WLL  P CPI
Sbjct: 75  KIPCYDYIA-KDGGSSPVDCAVCLENFKMGEKCRLLPLCRHSFHADCVDSWLLRNPICPI 134

Query: 121 CRTSTLESLKGADGWLEVTAGHGGCLAGCLAAFQPR 157
           CR S      G    L+  + H     G L   Q R
Sbjct: 135 CRASADSGKAGL--VLDEESSHSSEYVGQLRGRQSR 162

[Close]

BLAST of CmoCh15G003390 vs. TAIR10
Match: AT3G48030.1 (AT3G48030.1 hypoxia-responsive family protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 78.6 bits (192), Expect = 4.5e-15
Identity = 31/66 (46.97%), Postives = 41/66 (62.12%), Query Frame = 1


Query: 59  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 118
           ++ LP F Y  +   +  P DCAVCL +F   +K RLLP+C H+FH  C+D WLL    C
Sbjct: 186 IDALPVFLYGNVTISLEQPFDCAVCLNEFSDTDKLRLLPVCSHAFHLHCIDTWLLSNSTC 245

Query: 119 PICRTS 125
           P+CR S
Sbjct: 246 PLCRRS 251

[Close]

BLAST of CmoCh15G003390 vs. TAIR10
Match: AT5G05810.1 (AT5G05810.1 RING/U-box superfamily protein)

HSP 1 Score: 73.6 bits (179), Expect = 1.5e-13
Identity = 37/92 (40.22%), Postives = 51/92 (55.43%), Query Frame = 1


Query: 31  GGFENETTTVGRSNNNNGEATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 90
           GG+ N    VG   N+       + R  +E LP F++ A+       ++CAVCL +F+  
Sbjct: 50  GGYYNGGGVVGGRKNSG------IDRSVIESLPVFRFGALSGHKDG-LECAVCLARFEPT 109

Query: 91  EKCRLLPICKHSFHAQCVDEWLLLTPACPICR 123
           E  RLLP CKH+FH +CVD WL     CP+CR
Sbjct: 110 EVLRLLPKCKHAFHVECVDTWLDAHSTCPLCR 134

[Close]

BLAST of CmoCh15G003390 vs. TAIR10
Match: AT1G23980.1 (AT1G23980.1 RING/U-box superfamily protein)

HSP 1 Score: 73.2 bits (178), Expect = 1.9e-13
Identity = 34/71 (47.89%), Postives = 43/71 (60.56%), Query Frame = 1


Query: 59  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 118
           ++ LP F Y  ++     P DCAVCL +F   +K RLLP C H+FH  C+D WLL    C
Sbjct: 124 IDALPVFLYKEIKGTK-EPFDCAVCLCEFSEDDKLRLLPNCSHAFHIDCIDTWLLSNSTC 183

Query: 119 PICRTSTLESL 130
           P+CR  TL SL
Sbjct: 184 PLCR-GTLFSL 192

[Close]

BLAST of CmoCh15G003390 vs. TAIR10
Match: AT3G10910.1 (AT3G10910.1 RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-13
Identity = 36/96 (37.50%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 34  ENETTTVGRSNNNNGE---ATGCMRRDDLEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMG 93
           +++ +    +N N G    ATG +++  L+++P   Y +    M +  +C +CLG F+ G
Sbjct: 67  DDQVSNASNANANLGRLAAATG-LKKQALKQIPVGLYGSGIIDMKA-TECLICLGDFEDG 126

Query: 94  EKCRLLPICKHSFHAQCVDEWLLLTPACPICRTSTL 127
           EK R+LP C H FH +C+D WLL   +CP CR S L
Sbjct: 127 EKVRVLPKCNHGFHVRCIDTWLLSRSSCPTCRQSLL 160

[Close]

BLAST of CmoCh15G003390 vs. TAIR10
Match: AT4G30400.1 (AT4G30400.1 RING/U-box superfamily protein)

HSP 1 Score: 72.4 bits (176), Expect = 3.2e-13
Identity = 44/128 (34.38%), Postives = 66/128 (51.56%), Query Frame = 1


Query: 3   LIVSLILILLGIA-ILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLEK 62
           +I+S+I  + G+  +LV   +    R     F+N T   G+           + +  ++ 
Sbjct: 56  IILSIIFFISGLLHLLVRFLLTPSSRDREDYFDNVTALQGQLQQLFHLHDSGVDQSFIDT 115

Query: 63  LPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPIC 122
           LP F Y ++      P DCAVCL +F+  +K RLLP C H+FH  C+D WLL    CP+C
Sbjct: 116 LPVFHYKSIIGLKNYPFDCAVCLCEFETEDKLRLLPKCSHAFHMDCIDTWLLSHSTCPLC 175

Query: 123 RTSTLESL 130
           R+S L  L
Sbjct: 176 RSSLLSDL 183

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: gi|731419174|ref|XP_003633831.2| (PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera])

HSP 1 Score: 150.2 bits (378), Expect = 3.5e-33
Identity = 75/124 (60.48%), Postives = 89/124 (71.77%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +++SLIL+ LGI +LV+I+V IVGRA RGGF N     GR        +  M  DDL+
Sbjct: 15  MAIVISLILLFLGIGVLVIIHVCIVGRAFRGGFGN-----GRMVERGNPRSTSMSLDDLD 74

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPCF + A E+   SPVDCAVCL  F+MG+KCRLLP+C HSFHAQCVD WLL TP CPI
Sbjct: 75  KLPCFHFQAKEKGSSSPVDCAVCLDNFKMGDKCRLLPLCNHSFHAQCVDSWLLKTPICPI 133

Query: 121 CRTS 125
           CRTS
Sbjct: 135 CRTS 133

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: gi|595947408|ref|XP_007216220.1| (hypothetical protein PRUPE_ppa016567mg [Prunus persica])

HSP 1 Score: 149.8 bits (377), Expect = 4.5e-33
Identity = 75/130 (57.69%), Postives = 93/130 (71.54%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +  S+IL+ +GI  L+L++VWIVGRA R G     + V  +++  G A+  M +DDLE
Sbjct: 1   MAIFFSVILLFVGIGFLILVHVWIVGRAFRRGGFGNGSMVAMASSTGGTAS--MSKDDLE 60

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLP F Y+A  +  GSPVDCAVCL  F+MGEKCRLLP+CKHSFHAQCVD WLL TP CPI
Sbjct: 61  KLPSFDYVANWDKPGSPVDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLRTPICPI 120

Query: 121 CRTSTLESLK 131
           CR+ T E  K
Sbjct: 121 CRSRTAEPQK 128

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: gi|1009124676|ref|XP_015879199.1| (PREDICTED: UDP-glycosyltransferase 90A1-like [Ziziphus jujuba])

HSP 1 Score: 148.3 bits (373), Expect = 1.3e-32
Identity = 75/133 (56.39%), Postives = 94/133 (70.68%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +I+S++L+ +GI +LV+++V IVGRA R GF  + + V R++  N      M RDDLE
Sbjct: 16  MAIILSVVLLFVGIGLLVIVHVCIVGRAFRSGF-GDVSVVERASGGNRS----MSRDDLE 75

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLPC+ Y+  +    SPVDCAVCL  F+MGEKCRLLP CKHSFHAQCVDEWLL TP CPI
Sbjct: 76  KLPCYDYITKDTANSSPVDCAVCLETFKMGEKCRLLPFCKHSFHAQCVDEWLLRTPICPI 135

Query: 121 CRTSTLESLKGAD 134
           CR+S      G D
Sbjct: 136 CRSSADSRRGGGD 143

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: gi|645249888|ref|XP_008230950.1| (PREDICTED: RING-H2 finger protein ATL39-like [Prunus mume])

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 72/127 (56.69%), Postives = 91/127 (71.65%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGCMRRDDLE 60
           M +  S+IL+ +GI  L+L++VWIVGRA R G     + V  +++  G A+  M +DDLE
Sbjct: 15  MAIFFSVILLFVGIGFLILVHVWIVGRAFRRGGFGNGSMVAMASSTGGTAS--MSKDDLE 74

Query: 61  KLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPACPI 120
           KLP F Y+A  +   SP+DCAVCL  F+MGEKCRLLP+CKHSFHAQCVD WLL TP CPI
Sbjct: 75  KLPSFDYVANWDKPSSPLDCAVCLDSFKMGEKCRLLPLCKHSFHAQCVDAWLLQTPICPI 134

Query: 121 CRTSTLE 128
           CR+ T E
Sbjct: 135 CRSRTAE 139

[Close]

BLAST of CmoCh15G003390 vs. NCBI nr
Match: gi|703157553|ref|XP_010111758.1| (RING-H2 finger protein ATL47 [Morus notabilis])

HSP 1 Score: 145.2 bits (365), Expect = 1.1e-31
Identity = 76/134 (56.72%), Postives = 98/134 (73.13%), Query Frame = 1


Query: 1   MELIVSLILILLGIAILVLINVWIVGRALRGGFENETTTVGRSNNNNGEATGC--MRRDD 60
           M +I+S+I + +GI +L+ ++V IVGRA R GF N +  + R +N + + TG   M +DD
Sbjct: 16  MAIILSIIFLFVGIGLLIFVHVCIVGRAFRRGFGNVSVAMERGSNGS-DITGSTSMSKDD 75

Query: 61  LEKLPCFQYMAMEEPMGSPVDCAVCLGKFQMGEKCRLLPICKHSFHAQCVDEWLLLTPAC 120
           LEKLPCF YM  ++   SPVDCAVCL  FQ+GEKCRLLPICKHSFHA+CVD WLL  P C
Sbjct: 76  LEKLPCFDYMT-KDTATSPVDCAVCLESFQVGEKCRLLPICKHSFHAECVDAWLLQAPFC 135

Query: 121 PICRTSTLESLKGA 133
           P+CRTS  +S KG+
Sbjct: 136 PMCRTSA-DSSKGS 146

The following BLAST results are available for this feature:

BLAST of CmoCh15G003390 vs. Swiss-Prot


Match Name	E-value	Identity	Description
ATL48_ARATH	8.0e-14	46.97	RING-H2 finger protein ATL48 OS=Arabidopsis thaliana GN=ATL48 PE=1 SV=2	[more]
ATL43_ARATH	2.6e-12	40.22	RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2 SV=2	[more]
ATL47_ARATH	3.4e-12	47.89	RING-H2 finger protein ATL47 OS=Arabidopsis thaliana GN=ATL47 PE=2 SV=1	[more]
ATL13_ARATH	5.7e-12	34.38	RING-H2 finger protein ATL13 OS=Arabidopsis thaliana GN=ATL13 PE=2 SV=2	[more]
ATL72_ARATH	5.7e-12	37.50	RING-H2 finger protein ATL72 OS=Arabidopsis thaliana GN=ATL72 PE=2 SV=1	[more]

BLAST of CmoCh15G003390 vs. TrEMBL


Match Name	E-value	Identity	Description
M5WUQ4_PRUPE	3.2e-33	57.69	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016567mg PE=4 SV=1	[more]
W9SX80_9ROSA	7.8e-32	56.72	RING-H2 finger protein ATL47 OS=Morus notabilis GN=L484_008417 PE=4 SV=1	[more]
W1P7Q1_AMBTC	2.3e-31	57.46	Uncharacterized protein OS=Amborella trichopoda GN=AMTR_s00006p00267830 PE=4 SV=...	[more]
A0A067K4P7_JATCU	2.5e-30	52.03	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11493 PE=4 SV=1	[more]
A0A061ECH9_THECC	9.5e-30	48.72	UDP-Glycosyltransferase superfamily protein, putative OS=Theobroma cacao GN=TCM_...	[more]

BLAST of CmoCh15G003390 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G48030.1	4.5e-15	46.97	hypoxia-responsive family protein / zinc finger (C3HC4-type RING fin...	[more]
AT5G05810.1	1.5e-13	40.22	RING/U-box superfamily protein	[more]
AT1G23980.1	1.9e-13	47.89	RING/U-box superfamily protein	[more]
AT3G10910.1	3.2e-13	37.50	RING/U-box superfamily protein	[more]
AT4G30400.1	3.2e-13	34.38	RING/U-box superfamily protein	[more]

BLAST of CmoCh15G003390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|731419174\|ref\|XP_003633831.2\|	3.5e-33	60.48	PREDICTED: RING-H2 finger protein ATL56-like [Vitis vinifera]	[more]
gi\|595947408\|ref\|XP_007216220.1\|	4.5e-33	57.69	hypothetical protein PRUPE_ppa016567mg [Prunus persica]	[more]
gi\|1009124676\|ref\|XP_015879199.1\|	1.3e-32	56.39	PREDICTED: UDP-glycosyltransferase 90A1-like [Ziziphus jujuba]	[more]
gi\|645249888\|ref\|XP_008230950.1\|	1.1e-31	56.69	PREDICTED: RING-H2 finger protein ATL39-like [Prunus mume]	[more]
gi\|703157553\|ref\|XP_010111758.1\|	1.1e-31	56.72	RING-H2 finger protein ATL47 [Morus notabilis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001841	Znf_RING
IPR013083	Znf_RING/FYVE/PHD

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding
GO:0008270	zinc ion binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding
molecular_function	GO:0016740	transferase activity
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh15G003390.1	CmoCh15G003390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001841	Zinc finger, RING-type	PFAM	PF13639	zf-RING_2	coord: 79..122 score: 1.6
IPR001841	Zinc finger, RING-type	SMART	SM00184	ring_2	coord: 80..121 score: 1.
IPR001841	Zinc finger, RING-type	PROFILE	PS50089	ZF_RING_2	coord: 80..122 score: 11
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	G3DSA:3.30.40.10		coord: 78..124 score: 5.7
None	No IPR available	PANTHER	PTHR14155	RING FINGER DOMAIN-CONTAINING	coord: 1..124 score: 3.1
None	No IPR available	PANTHER	PTHR14155:SF103	SUBFAMILY NOT NAMED	coord: 1..124 score: 3.1
None	No IPR available	unknown	SSF57850	RING/U-box	coord: 70..128 score: 3.89

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh15G003390	Cucsa.098350	Cucumber (Gy14) v1	cgycmoB0205
CmoCh15G003390	CmaCh15G003280	Cucurbita maxima (Rimu)	cmacmoB287
CmoCh15G003390	CmaCh18G001590	Cucurbita maxima (Rimu)	cmacmoB401
CmoCh15G003390	MELO3C002255	Melon (DHL92) v3.5.1	cmomeB257
CmoCh15G003390	Carg02293	Silver-seed gourd	carcmoB0362

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh15G003390	Wild cucumber (PI 183967)	cmocpiB277
CmoCh15G003390	Wild cucumber (PI 183967)	cmocpiB296
CmoCh15G003390	Cucumber (Chinese Long) v2	cmocuB270
CmoCh15G003390	Cucumber (Chinese Long) v2	cmocuB287
CmoCh15G003390	Melon (DHL92) v3.5.1	cmomeB239
CmoCh15G003390	Melon (DHL92) v3.5.1	cmomeB266
CmoCh15G003390	Watermelon (Charleston Gray)	cmowcgB233
CmoCh15G003390	Watermelon (Charleston Gray)	cmowcgB237
CmoCh15G003390	Watermelon (97103) v1	cmowmB243
CmoCh15G003390	Watermelon (97103) v1	cmowmB247
CmoCh15G003390	Cucurbita pepo (Zucchini)	cmocpeB268
CmoCh15G003390	Cucurbita pepo (Zucchini)	cmocpeB279
CmoCh15G003390	Cucurbita pepo (Zucchini)	cmocpeB290
CmoCh15G003390	Bottle gourd (USVL1VR-Ls)	cmolsiB261
CmoCh15G003390	Bottle gourd (USVL1VR-Ls)	cmolsiB266
CmoCh15G003390	Cucumber (Gy14) v2	cgybcmoB297
CmoCh15G003390	Cucumber (Gy14) v2	cgybcmoB584
CmoCh15G003390	Melon (DHL92) v3.6.1	cmomedB271
CmoCh15G003390	Melon (DHL92) v3.6.1	cmomedB301
CmoCh15G003390	Silver-seed gourd	carcmoB0936
CmoCh15G003390	Cucumber (Chinese Long) v3	cmocucB0325
CmoCh15G003390	Cucumber (Chinese Long) v3	cmocucB0348
CmoCh15G003390	Watermelon (97103) v2	cmowmbB274
CmoCh15G003390	Watermelon (97103) v2	cmowmbB305
CmoCh15G003390	Wax gourd	cmowgoB0357
CmoCh15G003390	Wax gourd	cmowgoB0374
CmoCh15G003390	Cucurbita moschata (Rifu)	cmocmoB095
CmoCh15G003390	Cucurbita moschata (Rifu)	cmocmoB191
CmoCh15G003390	Cucurbita moschata (Rifu)	cmocmoB261
CmoCh15G003390	Cucumber (Gy14) v1	cgycmoB0439
CmoCh15G003390	Cucumber (Gy14) v1	cgycmoB0931
CmoCh15G003390	Cucurbita maxima (Rimu)	cmacmoB132
CmoCh15G003390	Cucurbita maxima (Rimu)	cmacmoB247
CmoCh15G003390	Cucurbita maxima (Rimu)	cmacmoB692