CmoCh14G019380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G019380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPhotosystem II CP43 reaction center protein
LocationCmo_Chr14 : 14348941 .. 14350639 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACCTATTCGAAGTGGCTCATTTCATACCTGAGAAACCCATGTATGAACAAGAATTAATTTTACTTCCCCTCCTAGCTACTCTAGGTTGGGGCGTAGGTCCGGGCGAGGAAGTTATAGACATGTTTCCGTACTTTGTGGACTTTCAATCTCATTTTTGTTTATACTGTTACACGGATTAAATATTTTTTTACATTTTTAAAAATAAATGTAGAGTTGGTTGGATTAGATTATAACTTTATTTTCGAGATAATAATTCGATAAAAAAAATGTTAACTCGTAAACTAAATCGAAATTTTTGTTTGTTAAAAATTCTAACTCAGATCGATAATAAGAATAATAATAATAATTCTATCCAACCTCGAGTATTAAATTATAAATTTACTCTTTAATGGTTTTAATTTTTATTTAAAGTATTTGTTCAAAATATAAATACATGATGTCTAATAGATAACCACCATAAGTTGGTACACAGTCAGCAACCAGTAAAGTGAGAAATTTTCGAAATATAAATTAAAAAAGTATTTATCTTTTTTTTTTAATTATATATCGATAAATTGTTATTATTATTGCTGTAAAATTGGAAGTGCAGTGACGATTAAATATTTTTTAAAAGTTTTAGGACTGTGGTTGTGATTTAACTCATTAAATAATTATATATTTGAATTTTTATATTAATTCGTACTAAAAAGAATATTATATTGATATCATATTACCTTTATATATGGGGAAGGGGTCCGGCACGTGGCACTAATATTGGAGACTGAATCAGAGATCATTCTCTCCGTCTTCGCCGAATATCCAACGGTCGTGAATTTGCCATGTACACCTAGCTCTGTACCCGAACCGAATTCCTAACCACGTGGGCATCGCCACCTAGATCATTTGACGTTGTCAAGTTCCCTCTTTGTCCTTTTGCCAGGTCACCAATTTAAATTAATTCTTTTTTTTTCTTATGCAAAAAACTTTTGTTTTTAATTTAAATTCAGTTTAAGGTTATTTAGTCTCTAATATTTTTAAAAATTAAAAATTAAAAATTATGGTTTCATTACAAATTCAAAATTTTATAAGGTATAAAACAGTAATTATAATTTTAAAAGTCGATAATGCGAATAAAAAATAATAAATAAAATAAATTTAGGATTCAACAATATTCCGAAGTTAATATCTTTGATTCTCTGGACTTGGTCTCTTTCTTTAAAATCCACGTGTACAATCTAACGGTCCTAATTCTCCCAACTCGTCACAGTTTCCGTGCAGGTTTGTCAAAATGGAAAAGCCCAACAACGTCAATTAACGGGCCAGCTTAAGTTCGGGTCCGAGCCTCGGGCACGAAGTCAGGTTTGGAACCAGAACTCAGCTTCTTTTGAAGTCCTCGAAGGCTATTCAAGTGATGTTAACTTGGAGCAGTTCGAACCTGGTAAAATCTCTGATCACTAGCCCTAGAACTTGTTAATCGACCGAATTACAAGCTCCTTGATTTTAGGTGAGAATTTCGGCTGTTTTTGAACTGCTAAATTGTTTACCGCTTTGTCTGAGATCGCGAAAAAGTTTCGCGCTTATTGAATTGAATTTTTTCTGTACGTGATTGTGAATTTGAGGACGAGATATTTGATCAATGGAGATCTTAATTTCAGGACTTCGAAGATTGGTAATGCGGGCGTTGATCCGTCTTTTTGGTGTTTTTTAAGGCTGTAG

mRNA sequence

ATGAACCTATTCGAAGTGGCTCATTTCATACCTGAGAAACCCATGTATGAACAAGAATTAATTTTACTTCCCCTCCTAGCTACTCTAGGTTGGGGCGTAGCCCTAGAACTTGTTAATCGACCGAATTACAAGCTCCTTGATTTTAGGACTTCGAAGATTGGTAATGCGGGCGTTGATCCGTCTTTTTGGTGTTTTTTAAGGCTGTAG

Coding sequence (CDS)

ATGAACCTATTCGAAGTGGCTCATTTCATACCTGAGAAACCCATGTATGAACAAGAATTAATTTTACTTCCCCTCCTAGCTACTCTAGGTTGGGGCGTAGCCCTAGAACTTGTTAATCGACCGAATTACAAGCTCCTTGATTTTAGGACTTCGAAGATTGGTAATGCGGGCGTTGATCCGTCTTTTTGGTGTTTTTTAAGGCTGTAG
Homology
[Close]
BLAST of CmoCh14G019380 vs. Swiss-Prot
Match: PSBC_GNEPA (Photosystem II CP43 reaction center protein OS=Gnetum parvifolium GN=psbC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. Swiss-Prot
Match: PSBC_WELMI (Photosystem II CP43 reaction center protein OS=Welwitschia mirabilis GN=psbC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.5e-10
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. Swiss-Prot
Match: PSBC_ARAHI (Photosystem II CP43 reaction center protein OS=Arabis hirsuta GN=psbC PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. Swiss-Prot
Match: PSBC_PLAOC (Photosystem II CP43 reaction center protein OS=Platanus occidentalis GN=psbC PE=3 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Sbjct: 55 MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGV 87

[Close]
BLAST of CmoCh14G019380 vs. Swiss-Prot
Match: PSBC_ANTFO (Photosystem II CP43 reaction center protein OS=Anthoceros formosae GN=psbC PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 2.0e-10
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. TrEMBL
Match: A0A0A9HED1_ARUDO (PsbC OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 1.0e-08
Identity = 30/33 (90.91%), Postives = 32/33 (96.97%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHF+PEKP+YEQELILLP LATLGWGV
Sbjct: 1  MNLFEVAHFVPEKPIYEQELILLPHLATLGWGV 33

[Close]
BLAST of CmoCh14G019380 vs. TrEMBL
Match: A0A0X9SPT0_WELMI (Photosystem II CP43 reaction center protein OS=Welwitschia mirabilis GN=psbC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. TrEMBL
Match: Q8HT01_EPHSI (Photosystem II CP43 reaction center protein (Fragment) OS=Ephedra sinica GN=psbC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. TrEMBL
Match: A0A0M3SGL7_9GENT (Photosystem II CP43 reaction center protein OS=Gynochthodes officinalis GN=psbC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1   MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
           MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 77  MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 109

[Close]
BLAST of CmoCh14G019380 vs. TrEMBL
Match: N0DQX6_9SPER (Photosystem II CP43 reaction center protein OS=Gnetum ula GN=psbC PE=3 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 1.7e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. TAIR10
Match: ATCG00280.1 (ATCG00280.1 photosystem II reaction center protein C)

HSP 1 Score: 65.9 bits (159), Expect = 1.1e-11
Identity = 30/33 (90.91%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHF+PEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFVPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. NCBI nr
Match: gi|1002161292|ref|YP_009231409.1| (photosystem II 44 kDa protein (chloroplast) [Ephedra foeminea])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. NCBI nr
Match: gi|649131080|ref|YP_009032893.1| (photosystem II CP43 chlorophyll apoprotein (chloroplast) [Diplopterygium glaucum])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1   MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
           MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 81  MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 113

[Close]
BLAST of CmoCh14G019380 vs. NCBI nr
Match: gi|408899845|gb|AFU94726.1| (PsbC, partial (chloroplast) [Turnera ulmifolia])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. NCBI nr
Match: gi|27435917|gb|AAO13289.1| (photosystem II CP43 protein [Welwitschia mirabilis])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1  MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
          MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 67 MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 99

[Close]
BLAST of CmoCh14G019380 vs. NCBI nr
Match: gi|937546777|ref|YP_009169761.1| (photosystem II 44 kDa protein (chloroplast) [Gynochthodes officinalis])

HSP 1 Score: 66.2 bits (160), Expect = 2.5e-08
Identity = 31/33 (93.94%), Postives = 31/33 (93.94%), Query Frame = 1 

Query: 1   MNLFEVAHFIPEKPMYEQELILLPLLATLGWGV 34
           MNLFEVAHFIPEKPMYEQ LILLP LATLGWGV
Sbjct: 77  MNLFEVAHFIPEKPMYEQGLILLPHLATLGWGV 109

The following BLAST results are available for this feature:
BLAST of CmoCh14G019380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PSBC_GNEPA1.5e-1093.94Photosystem II CP43 reaction center protein OS=Gnetum parvifolium GN=psbC PE=3 S... [more]
PSBC_WELMI1.5e-1093.94Photosystem II CP43 reaction center protein OS=Welwitschia mirabilis GN=psbC PE=... [more]
PSBC_ARAHI2.0e-1090.91Photosystem II CP43 reaction center protein OS=Arabis hirsuta GN=psbC PE=3 SV=1[more]
PSBC_PLAOC2.0e-1090.91Photosystem II CP43 reaction center protein OS=Platanus occidentalis GN=psbC PE=... [more]
PSBC_ANTFO2.0e-1090.91Photosystem II CP43 reaction center protein OS=Anthoceros formosae GN=psbC PE=2 ... [more]
BLAST of CmoCh14G019380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A9HED1_ARUDO1.0e-0890.91PsbC OS=Arundo donax PE=4 SV=1[more]
A0A0X9SPT0_WELMI1.7e-0893.94Photosystem II CP43 reaction center protein OS=Welwitschia mirabilis GN=psbC PE=... [more]
Q8HT01_EPHSI1.7e-0893.94Photosystem II CP43 reaction center protein (Fragment) OS=Ephedra sinica GN=psbC... [more]
A0A0M3SGL7_9GENT1.7e-0893.94Photosystem II CP43 reaction center protein OS=Gynochthodes officinalis GN=psbC ... [more]
N0DQX6_9SPER1.7e-0893.94Photosystem II CP43 reaction center protein OS=Gnetum ula GN=psbC PE=3 SV=1[more]
BLAST of CmoCh14G019380 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00280.11.1e-1190.91ATCG00280.1 photosystem II reaction center protein C[more]
BLAST of CmoCh14G019380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|1002161292|ref|YP_009231409.1|2.5e-0893.94photosystem II 44 kDa protein (chloroplast) [Ephedra foeminea][more]
gi|649131080|ref|YP_009032893.1|2.5e-0893.94photosystem II CP43 chlorophyll apoprotein (chloroplast) [Diplopterygium glaucum... [more]
gi|408899845|gb|AFU94726.1|2.5e-0893.94PsbC, partial (chloroplast) [Turnera ulmifolia][more]
gi|27435917|gb|AAO13289.1|2.5e-0893.94photosystem II CP43 protein [Welwitschia mirabilis][more]
gi|937546777|ref|YP_009169761.1|2.5e-0893.94photosystem II 44 kDa protein (chloroplast) [Gynochthodes officinalis][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000932PS_antenna-like
Vocabulary: Biological Process
TermDefinition
GO:0019684photosynthesis, light reaction
GO:0009767photosynthetic electron transport chain
Vocabulary: Cellular Component
TermDefinition
GO:0009521photosystem
GO:0016020membrane
Vocabulary: Molecular Function
TermDefinition
GO:0016168chlorophyll binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009772 photosynthetic electron transport in photosystem II
biological_process GO:0018298 protein-chromophore linkage
biological_process GO:0019684 photosynthesis, light reaction
biological_process GO:0009767 photosynthetic electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0009523 photosystem II
cellular_component GO:0016020 membrane
cellular_component GO:0009521 photosystem
molecular_function GO:0016168 chlorophyll binding
molecular_function GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
molecular_function GO:0046872 metal ion binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G019380.1CmoCh14G019380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000932Photosystem antenna protein-likePFAMPF00421PSIIcoord: 1..36
score: 1.
IPR000932Photosystem antenna protein-likeunknownSSF161077Photosystem II antenna protein-likecoord: 1..34
score: 3.27
NoneNo IPR availablePANTHERPTHR33180FAMILY NOT NAMEDcoord: 1..33
score: 1.0
NoneNo IPR availablePANTHERPTHR33180:SF4PHOTOSYSTEM II CP43 CHLOROPHYLL APOPROTEINcoord: 1..33
score: 1.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G019380Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G019380Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G019380Cucurbita maxima (Rimu)cmacmoB501
CmoCh14G019380Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G019380Cucurbita maxima (Rimu)cmacmoB883
CmoCh14G019380Wild cucumber (PI 183967)cmocpiB227
CmoCh14G019380Wild cucumber (PI 183967)cmocpiB239
CmoCh14G019380Wild cucumber (PI 183967)cmocpiB243
CmoCh14G019380Cucumber (Chinese Long) v2cmocuB224
CmoCh14G019380Cucumber (Chinese Long) v2cmocuB239
CmoCh14G019380Cucumber (Chinese Long) v2cmocuB236
CmoCh14G019380Melon (DHL92) v3.5.1cmomeB221
CmoCh14G019380Melon (DHL92) v3.5.1cmomeB230
CmoCh14G019380Watermelon (Charleston Gray)cmowcgB219
CmoCh14G019380Watermelon (Charleston Gray)cmowcgB221
CmoCh14G019380Watermelon (Charleston Gray)cmowcgB227
CmoCh14G019380Watermelon (97103) v1cmowmB231
CmoCh14G019380Watermelon (97103) v1cmowmB239
CmoCh14G019380Cucurbita pepo (Zucchini)cmocpeB223
CmoCh14G019380Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G019380Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G019380Bottle gourd (USVL1VR-Ls)cmolsiB213
CmoCh14G019380Bottle gourd (USVL1VR-Ls)cmolsiB233
CmoCh14G019380Bottle gourd (USVL1VR-Ls)cmolsiB235
CmoCh14G019380Cucumber (Gy14) v2cgybcmoB180
CmoCh14G019380Cucumber (Gy14) v2cgybcmoB288
CmoCh14G019380Cucumber (Gy14) v2cgybcmoB290
CmoCh14G019380Melon (DHL92) v3.6.1cmomedB250
CmoCh14G019380Melon (DHL92) v3.6.1cmomedB260
CmoCh14G019380Silver-seed gourdcarcmoB0243
CmoCh14G019380Silver-seed gourdcarcmoB0319
CmoCh14G019380Silver-seed gourdcarcmoB1049
CmoCh14G019380Silver-seed gourdcarcmoB1284
CmoCh14G019380Silver-seed gourdcarcmoB1443
CmoCh14G019380Cucumber (Chinese Long) v3cmocucB0266
CmoCh14G019380Cucumber (Chinese Long) v3cmocucB0279
CmoCh14G019380Cucumber (Chinese Long) v3cmocucB0283
CmoCh14G019380Watermelon (97103) v2cmowmbB243
CmoCh14G019380Watermelon (97103) v2cmowmbB246
CmoCh14G019380Watermelon (97103) v2cmowmbB253
CmoCh14G019380Wax gourdcmowgoB0299
CmoCh14G019380Wax gourdcmowgoB0318
CmoCh14G019380Wax gourdcmowgoB0333
CmoCh14G019380Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G019380Cucurbita moschata (Rifu)cmocmoB208
CmoCh14G019380Cucurbita moschata (Rifu)cmocmoB213
CmoCh14G019380Cucurbita moschata (Rifu)cmocmoB224
CmoCh14G019380Cucurbita moschata (Rifu)cmocmoB233
CmoCh14G019380Cucumber (Gy14) v1cgycmoB0700