CmoCh14G018560 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G018560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 14007233 .. 14007805 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCCTTCCTCCTTAAAGCTCCTCTGTCTTTCCCATGGAAGTCCTCCCCCTTTGATAAATCTAGCTGGAACCCATCATTCAAGGAGCTGTTGTTTACCTCCCGCAAGACATCTTGCCGGCCATGTCGCCGGAAAAACACGATTTTCGGTGTCCCTTGTGGGCTCTGTGGCCAAGGGATTCTTGTCTCTGAAACTCTTAATCACCATTGCACCATTTCTTGTCTAATGAGCTTGCTTCTTTTGGGACCAATTATTTCCTTGCTCCGAAAGCTCTTAGCAGCCGCCGTTATGGACCAATTATTTCCATGGCCTAGCCTCTGCTTCTCGAAAACCCCAAATGACACTTTACGATTACATGACGATGCCGCCACCGTCTCTAAGAAGCTATTCCGGCGCGCCGTCGACATGGCCCACTGGCTTCCGCTTCATCCCTTGTTGGCCCAACCACCGCCGACGGTATTAACGTTCAACAGAATCAGGCTTTGGCGTGGCAATAATGAGAATAACTGTAGCTCTGGTGGTTCAGAAGACTTGGATTTGACTCTCTCTAAAGAAGTTCATGTTATTTTCTAA

mRNA sequence

ATGGCCTTCCTCCTTAAAGCTCCTCTGTCTTTCCCATGGAAGTCCTCCCCCTTTGATAAATCTAGCTGGAACCCATCATTCAAGGAGCTGTTGTTTACCTCCCGCAAGACATCTTGCCGGCCATGTCGCCGGAAAAACACGATTTTCGGTGTCCCTTGTGGGCTCTGTGGCCAAGGGATTCTTGTCTCTGAAACTCTTAATCACCATTGCACCATTTCTTGTCTAATGAGCTTGCTTCTTTTGGGACCAATTATTTCCTTGCTCCGAAAGCTCTTAGCAGCCGCCGTTATGGACCAATTATTTCCATGGCCTAGCCTCTGCTTCTCGAAAACCCCAAATGACACTTTACGATTACATGACGATGCCGCCACCGTCTCTAAGAAGCTATTCCGGCGCGCCGTCGACATGGCCCACTGGCTTCCGCTTCATCCCTTGTTGGCCCAACCACCGCCGACGGTATTAACGTTCAACAGAATCAGGCTTTGGCGTGGCAATAATGAGAATAACTGTAGCTCTGGTGGTTCAGAAGACTTGGATTTGACTCTCTCTAAAGAAGTTCATGTTATTTTCTAA

Coding sequence (CDS)

ATGGCCTTCCTCCTTAAAGCTCCTCTGTCTTTCCCATGGAAGTCCTCCCCCTTTGATAAATCTAGCTGGAACCCATCATTCAAGGAGCTGTTGTTTACCTCCCGCAAGACATCTTGCCGGCCATGTCGCCGGAAAAACACGATTTTCGGTGTCCCTTGTGGGCTCTGTGGCCAAGGGATTCTTGTCTCTGAAACTCTTAATCACCATTGCACCATTTCTTGTCTAATGAGCTTGCTTCTTTTGGGACCAATTATTTCCTTGCTCCGAAAGCTCTTAGCAGCCGCCGTTATGGACCAATTATTTCCATGGCCTAGCCTCTGCTTCTCGAAAACCCCAAATGACACTTTACGATTACATGACGATGCCGCCACCGTCTCTAAGAAGCTATTCCGGCGCGCCGTCGACATGGCCCACTGGCTTCCGCTTCATCCCTTGTTGGCCCAACCACCGCCGACGGTATTAACGTTCAACAGAATCAGGCTTTGGCGTGGCAATAATGAGAATAACTGTAGCTCTGGTGGTTCAGAAGACTTGGATTTGACTCTCTCTAAAGAAGTTCATGTTATTTTCTAA
Homology
[Close]
BLAST of CmoCh14G018560 vs. TrEMBL
Match: A0A0A0L892_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134950 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 2.6e-22
Identity = 90/245 (36.73%), Postives = 108/245 (44.08%), Query Frame = 1 

Query: 1   MAFLLKAPL-------------SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNT 60
           M FLL+ PL             SFP  SS F +SS NPS   +LFTS ++S RP RRKNT
Sbjct: 1   MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60

Query: 61  IFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQLFPWPSLC 120
           IFG PCGLCGQ I  SE LNHH     L +      + S       ++ + Q  P  S  
Sbjct: 61  IFGAPCGLCGQVIFGSEALNHHYNYHFLQN-----ELASFRGHSNPSSGISQRPPLWSNY 120

Query: 121 F------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRI 180
           F      S+ P  TL  +       +     A+DMAH+LPLHPLLAQPP  P   T NR+
Sbjct: 121 FHGQASASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRM 180

Query: 181 RL-----------------WR------------------------GNNENNCSSGGSEDL 184
                              W                          + EN+CSS  SE L
Sbjct: 181 NFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGL 240

[Close]
BLAST of CmoCh14G018560 vs. NCBI nr
Match: gi|700201714|gb|KGN56847.1| (hypothetical protein Csa_3G134950 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 3.7e-22
Identity = 90/245 (36.73%), Postives = 108/245 (44.08%), Query Frame = 1 

Query: 1   MAFLLKAPL-------------SFPWKSSPFDKSSWNPSFKELLFTSRKTSCRPCRRKNT 60
           M FLL+ PL             SFP  SS F +SS NPS   +LFTS ++S RP RRKNT
Sbjct: 1   MPFLLQPPLFALFFLTSFSPSLSFPRNSSSFGESSSNPSLNNMLFTSSESSGRPSRRKNT 60

Query: 61  IFGVPCGLCGQGILVSETLNHHCTISCLMSLLLLGPIISLLRKLLAAAVMDQLFPWPSLC 120
           IFG PCGLCGQ I  SE LNHH     L +      + S       ++ + Q  P  S  
Sbjct: 61  IFGAPCGLCGQVIFGSEALNHHYNYHFLQN-----ELASFRGHSNPSSGISQRPPLWSNY 120

Query: 121 F------SKTPNDTLRLHDDAATVSKKLFRRAVDMAHWLPLHPLLAQPP--PTVLTFNRI 180
           F      S+ P  TL  +       +     A+DMAH+LPLHPLLAQPP  P   T NR+
Sbjct: 121 FHGQASASREPQMTLNDYLTMPPSLRSYSGAAIDMAHFLPLHPLLAQPPPLPRTSTANRM 180

Query: 181 RL-----------------WR------------------------GNNENNCSSGGSEDL 184
                              W                          + EN+CSS  SE L
Sbjct: 181 NFQQNQAVAGHRRQGNQVQWNNGGVREVGGQPASEEQPPQDVIDLNSEENDCSSDDSEGL 240

The following BLAST results are available for this feature:
BLAST of CmoCh14G018560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G018560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L892_CUCSA2.6e-2236.73Uncharacterized protein OS=Cucumis sativus GN=Csa_3G134950 PE=4 SV=1[more]
BLAST of CmoCh14G018560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G018560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|700201714|gb|KGN56847.1|3.7e-2236.73hypothetical protein Csa_3G134950 [Cucumis sativus][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G018560.1CmoCh14G018560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G018560Csa3G134950Cucumber (Chinese Long) v2cmocuB239
CmoCh14G018560CSPI03G11850Wild cucumber (PI 183967)cmocpiB243
CmoCh14G018560Lsi05G017390Bottle gourd (USVL1VR-Ls)cmolsiB233
CmoCh14G018560Cp4.1LG08g03330Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G018560MELO3C006414.2Melon (DHL92) v3.6.1cmomedB260
CmoCh14G018560CsaV3_3G012000Cucumber (Chinese Long) v3cmocucB0283
CmoCh14G018560Bhi01G000516Wax gourdcmowgoB0320
CmoCh14G018560CsGy3G011980Cucumber (Gy14) v2cgybcmoB290
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G018560CmoCh06G013250Cucurbita moschata (Rifu)cmocmoB224
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G018560Cucumber (Gy14) v2cgybcmoB181
CmoCh14G018560Melon (DHL92) v3.6.1cmomedB249
CmoCh14G018560Melon (DHL92) v3.6.1cmomedB250
CmoCh14G018560Silver-seed gourdcarcmoB0319
CmoCh14G018560Silver-seed gourdcarcmoB0328
CmoCh14G018560Silver-seed gourdcarcmoB1049
CmoCh14G018560Silver-seed gourdcarcmoB1284
CmoCh14G018560Silver-seed gourdcarcmoB1443
CmoCh14G018560Cucumber (Chinese Long) v3cmocucB0267
CmoCh14G018560Watermelon (97103) v2cmowmbB243
CmoCh14G018560Watermelon (97103) v2cmowmbB246
CmoCh14G018560Watermelon (97103) v2cmowmbB253
CmoCh14G018560Wax gourdcmowgoB0299
CmoCh14G018560Wax gourdcmowgoB0333
CmoCh14G018560Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G018560Cucurbita moschata (Rifu)cmocmoB207
CmoCh14G018560Cucurbita moschata (Rifu)cmocmoB213
CmoCh14G018560Cucurbita moschata (Rifu)cmocmoB233
CmoCh14G018560Cucumber (Gy14) v1cgycmoB0700
CmoCh14G018560Cucumber (Gy14) v1cgycmoB1054
CmoCh14G018560Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G018560Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G018560Cucurbita maxima (Rimu)cmacmoB500
CmoCh14G018560Cucurbita maxima (Rimu)cmacmoB579
CmoCh14G018560Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G018560Cucurbita maxima (Rimu)cmacmoB883
CmoCh14G018560Wild cucumber (PI 183967)cmocpiB228
CmoCh14G018560Cucumber (Chinese Long) v2cmocuB225
CmoCh14G018560Melon (DHL92) v3.5.1cmomeB220
CmoCh14G018560Melon (DHL92) v3.5.1cmomeB221
CmoCh14G018560Melon (DHL92) v3.5.1cmomeB230
CmoCh14G018560Watermelon (Charleston Gray)cmowcgB219
CmoCh14G018560Watermelon (Charleston Gray)cmowcgB221
CmoCh14G018560Watermelon (Charleston Gray)cmowcgB227
CmoCh14G018560Watermelon (97103) v1cmowmB223
CmoCh14G018560Watermelon (97103) v1cmowmB231
CmoCh14G018560Watermelon (97103) v1cmowmB239
CmoCh14G018560Cucurbita pepo (Zucchini)cmocpeB223
CmoCh14G018560Cucurbita pepo (Zucchini)cmocpeB230
CmoCh14G018560Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G018560Cucurbita pepo (Zucchini)cmocpeB252
CmoCh14G018560Bottle gourd (USVL1VR-Ls)cmolsiB213
CmoCh14G018560Bottle gourd (USVL1VR-Ls)cmolsiB235