CmoCh14G017920 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G017920
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 13763973 .. 13766108 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCAATGCATACACCGAGTGTTTATGGACTGGTATGTCGATAAGCTATTCATTTTTTCTATTGAATTTTCAGGCTTTCAGATCAAGGTTTCTTTTTGACACTTGTGAATTATTCTTCATGTGTTGTACATTTTCTGACAACTTATTCTAGCTTACAGTGGAATGGAAATAAGCCATAGAATTAGGACACTAACTTGGTGTGGATCATATGCAATGAATTTCTGGACCTAGGGTCCTGCCAGATTCACGGCACAACAAAACATTAGTGCAGCTGAAGTATGTTGTGAATGTTAAGGCCTATTTCAGAAGAATGACTCAGTTGAACCCACTTTTTACCGTTCACTCTTGTGCCATGAAATTTCTCCTTGAAATCAGGAAGTATCTCTGCAGGAGTGGTGCCCTACAGCTGTGAGGTCCGAGGCAGCAGCAAAATCGCAAAGATCTCTGGCATCTGTTGTCCAAGACAGTTGGGTTCAGGGTGTTCTGCTAGCAAGCCGGATGCTGGGAATTGAAACTTTGTTGGAACTACGGTAGGAAGGAATTCATAATTCCAGGGAGGGGGGTGTGGGAGAAGTGGAGGTATATGAGATTTAGGCTGGCGGACTCTGAAGAATGTGGAAATGCGAGGATAAGGCAAATATTCTTCTTAATTCCTAATGAGATGAAAGGAAGACTGATTTTTGCAGCCCCTTTTTTGAAAATAGAGATGGTTCAAACATTAGTCAAGGCCAAGTAAAACCATTAGCCAGGGGGTAATATTGCCTTTTGCCTGTAAAACCTTTAGGCAAGTACTTAACGGGAGTTGTAGGTGGCAGTACTAGGAAGGAGCGACGTGTGGGGATGGGATAAGCATATCTTTAGCTGAGGATTAAACAGACTAGTGTTTTTGGGTCGCCCAAGCTTCTCAAATATTTGGAGATCATTCTGCTTCAGTCCTGTTATTCTCCAGTTCACTTTTGCGAACTAGTGTAGAAGTTGATGTTGTCTTATTTTCGCACCTCATTTGCATTTAATTATGCAATTATGTTCGCAAGTTGTCATGATGTCGATAACTGGATGATATTCATTCTTTCCTTTGGTTGCAGGAAGTGGATATTTGGTCGTTTGGATGTCTGTTATTGGAACTGTTGACCTTGCGAATTCCATACTTGGGACTTTGCAAATCTTCGATCAACTTCAGGTCTCTTCTATTCTTGATTTAGATTCCCATGTCCCAGGACCATTTAAAAAGAATTTGGCACAGCATGCTTGAATCTCTCACCTTTTTTTGAAAGTGCAGTTGTCATTTAGATTCAATATTTGAAGGTGTAGGATGTTCCCTGATCAACAATTGTTTTCTCAATCTGAGCAGATGGGCAAACGACCAGAATTGATAGGTGAGCTTGAGGAGGCATTGGGGTCGATAAAGGAAAGCTCAATGTCTCAATCTGTTCAAGGACAGATGCTTCAGAGAAAGACTAAGAAGCTACAGGATTCTAGATCGACATGTTTCATAGATGTACTAAGGAAAACCCGAATGCCCGACCAACAGCTGAAGAACTCTACAAAATTTTGCTCGAGCACACAGCCAAAGTTAAACCTTTACAACACCTAGCTACATGAAATTGATACCCTCTCACACCCCATAACCTTAATCCCAAATTTTGAAGCCCTAGAATGTTTGCATTAGCTTTCCTGAATCCTTGTAGTAGGTAGGTAGGGCCTTTTGCCCCCAGAATAGTTAGGCTCACAGATTGATTTAGGATACAGTGGCCAAGTAATCAGATAGAATATCTAATTGTAATGTATTTAAAATCCACCATCGCTCCAGGGAAATTTAACTCCGTCCAATCTATTGATGGGAGCTTTCTCCAGACCTCAGAAAAAGCATGAAAAAAAAAAGCTCAACCGGTACGATCTCTCCATCACTCCAGAATGAAAGGGACGATCTCATCGTTCTTGGTCTATGAAGATATATCATTAGGTATTTTGCCTTATTAGACCCTAGAATGAAAGGGACGATCTCGTAGTTCTTGGTCTGTGAAGATATATTGTTAGGTGCTTTGCCTCGTTAGACAAGAGGGAAGAATCAATTGTGACATTGATTTGATGTTGATAGAACTTGAGGTTGCTTTAATGAACGTGGAATCCTCAC

mRNA sequence

ATGAGCAATGCATACACCGAGTGTTTATGGACTGGAAGTGGATATTTGGTCGTTTGGATGTCTGTTATTGGAACTGTTGACCTTGCGAATTCCATACTTGGGACTTTGCAAATCTTCGATCAACTTCAGATGGGCAAACGACCAGAATTGATAGGTGAGCTTGAGGAGGCATTGGGGTCGATAAAGGAAAGCTCAATGTCTCAATCTGTTCAAGGACAGATGCTTCAGAGAAAGACTAAGAAGCTACAGGATTCTAGATCGACATGTTTCATAGATGTACTAAGGAAAACCCGAATGCCCGACCAACAGCTGAAGAACTCTACAAAATTTTGCTCGAGCACACAGCCAAAGTTAAACCTTTACAACACCTAGCTACATGAAATTGATACCCTCTCACACCCCATAACCTTAATCCCAAATTTTGAAGCCCTAGAATGTTTGCATTAGCTTTCCTGAATCCTTGTAGTAGGTAGGTAGGGCCTTTTGCCCCCAGAATAGTTAGGCTCACAGATTGATTTAGGATACAGTGGCCAAGTAATCAGATAGAATATCTAATTGTAATGTATTTAAAATCCACCATCGCTCCAGGGAAATTTAACTCCGTCCAATCTATTGATGGGAGCTTTCTCCAGACCTCAGAAAAAGCATGAAAAAAAAAAGCTCAACCGGTACGATCTCTCCATCACTCCAGAATGAAAGGGACGATCTCATCGTTCTTGGTCTATGAAGATATATCATTAGGTATTTTGCCTTATTAGACCCTAGAATGAAAGGGACGATCTCGTAGTTCTTGGTCTGTGAAGATATATTGTTAGGTGCTTTGCCTCGTTAGACAAGAGGGAAGAATCAATTGTGACATTGATTTGATGTTGATAGAACTTGAGGTTGCTTTAATGAACGTGGAATCCTCAC

Coding sequence (CDS)

ATGAGCAATGCATACACCGAGTGTTTATGGACTGGAAGTGGATATTTGGTCGTTTGGATGTCTGTTATTGGAACTGTTGACCTTGCGAATTCCATACTTGGGACTTTGCAAATCTTCGATCAACTTCAGATGGGCAAACGACCAGAATTGATAGGTGAGCTTGAGGAGGCATTGGGGTCGATAAAGGAAAGCTCAATGTCTCAATCTGTTCAAGGACAGATGCTTCAGAGAAAGACTAAGAAGCTACAGGATTCTAGATCGACATGTTTCATAGATGTACTAAGGAAAACCCGAATGCCCGACCAACAGCTGAAGAACTCTACAAAATTTTGCTCGAGCACACAGCCAAAGTTAAACCTTTACAACACCTAG
Homology
[Close]
BLAST of CmoCh14G017920 vs. TrEMBL
Match: A0A0A0L8J4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145740 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 8.4e-06
Identity = 37/68 (54.41%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 33   LGTLQIFDQLQMGKRPELIGELEEALGSIKESSMSQS----VQGQMLQRKTKKLQDSRST 92
            L  LQIFD LQMGKRPEL G+LEE LG+IK+S+MSQS     +GQ   ++TK L      
Sbjct: 1037 LTELQIFDHLQMGKRPELAGDLEEELGTIKQSTMSQSSVQESEGQEKDQETKAL------ 1096

Query: 93   CFIDVLRK 97
              ID+ RK
Sbjct: 1097 -LIDLFRK 1097

[Close]
BLAST of CmoCh14G017920 vs. NCBI nr
Match: gi|659076311|ref|XP_008438611.1| (PREDICTED: uncharacterized protein LOC103483667 isoform X2 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 33   LGTLQIFDQLQMGKRPELIGELEEALGSIKESSMSQS----VQGQMLQRKTKKLQDSRST 92
            L  LQIFD LQMGKRPEL G+LEE LGSIKESSMSQS     +GQ   ++TK L      
Sbjct: 1037 LTELQIFDHLQMGKRPELAGDLEEELGSIKESSMSQSSVQESEGQEKDQETKAL------ 1096

Query: 93   CFIDVLRK 97
              ID+ RK
Sbjct: 1097 -LIDLFRK 1097

[Close]
BLAST of CmoCh14G017920 vs. NCBI nr
Match: gi|659076309|ref|XP_008438610.1| (PREDICTED: uncharacterized protein LOC103483667 isoform X1 [Cucumis melo])

HSP 1 Score: 61.6 bits (148), Expect = 1.1e-06
Identity = 40/68 (58.82%), Postives = 45/68 (66.18%), Query Frame = 1 

Query: 33   LGTLQIFDQLQMGKRPELIGELEEALGSIKESSMSQS----VQGQMLQRKTKKLQDSRST 92
            L  LQIFD LQMGKRPEL G+LEE LGSIKESSMSQS     +GQ   ++TK L      
Sbjct: 1037 LTELQIFDHLQMGKRPELAGDLEEELGSIKESSMSQSSVQESEGQEKDQETKAL------ 1096

Query: 93   CFIDVLRK 97
              ID+ RK
Sbjct: 1097 -LIDLFRK 1097

The following BLAST results are available for this feature:
BLAST of CmoCh14G017920 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G017920 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L8J4_CUCSA8.4e-0654.41Uncharacterized protein OS=Cucumis sativus GN=Csa_3G145740 PE=4 SV=1[more]
BLAST of CmoCh14G017920 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G017920 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659076311|ref|XP_008438611.1|1.1e-0658.82PREDICTED: uncharacterized protein LOC103483667 isoform X2 [Cucumis melo][more]
gi|659076309|ref|XP_008438610.1|1.1e-0658.82PREDICTED: uncharacterized protein LOC103483667 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G017920.1CmoCh14G017920.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G017920Watermelon (97103) v2cmowmbB243
CmoCh14G017920Watermelon (97103) v2cmowmbB246
CmoCh14G017920Watermelon (97103) v2cmowmbB253
CmoCh14G017920Watermelon (97103) v2cmowmbB263
CmoCh14G017920Wax gourdcmowgoB0298
CmoCh14G017920Wax gourdcmowgoB0317
CmoCh14G017920Wax gourdcmowgoB0333
CmoCh14G017920Cucurbita moschata (Rifu)cmocmoB198
CmoCh14G017920Cucurbita moschata (Rifu)cmocmoB213
CmoCh14G017920Cucurbita moschata (Rifu)cmocmoB224
CmoCh14G017920Cucurbita moschata (Rifu)cmocmoB233
CmoCh14G017920Cucumber (Gy14) v1cgycmoB0700
CmoCh14G017920Cucumber (Gy14) v1cgycmoB1072
CmoCh14G017920Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G017920Cucurbita maxima (Rimu)cmacmoB350
CmoCh14G017920Cucurbita maxima (Rimu)cmacmoB797
CmoCh14G017920Cucurbita maxima (Rimu)cmacmoB883
CmoCh14G017920Wild cucumber (PI 183967)cmocpiB228
CmoCh14G017920Wild cucumber (PI 183967)cmocpiB243
CmoCh14G017920Cucumber (Chinese Long) v2cmocuB225
CmoCh14G017920Cucumber (Chinese Long) v2cmocuB239
CmoCh14G017920Melon (DHL92) v3.5.1cmomeB222
CmoCh14G017920Melon (DHL92) v3.5.1cmomeB230
CmoCh14G017920Watermelon (Charleston Gray)cmowcgB219
CmoCh14G017920Watermelon (Charleston Gray)cmowcgB221
CmoCh14G017920Watermelon (Charleston Gray)cmowcgB227
CmoCh14G017920Watermelon (97103) v1cmowmB223
CmoCh14G017920Watermelon (97103) v1cmowmB231
CmoCh14G017920Watermelon (97103) v1cmowmB239
CmoCh14G017920Cucurbita pepo (Zucchini)cmocpeB223
CmoCh14G017920Cucurbita pepo (Zucchini)cmocpeB230
CmoCh14G017920Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G017920Cucurbita pepo (Zucchini)cmocpeB254
CmoCh14G017920Bottle gourd (USVL1VR-Ls)cmolsiB213
CmoCh14G017920Bottle gourd (USVL1VR-Ls)cmolsiB233
CmoCh14G017920Bottle gourd (USVL1VR-Ls)cmolsiB235
CmoCh14G017920Cucumber (Gy14) v2cgybcmoB181
CmoCh14G017920Cucumber (Gy14) v2cgybcmoB290
CmoCh14G017920Melon (DHL92) v3.6.1cmomedB251
CmoCh14G017920Melon (DHL92) v3.6.1cmomedB260
CmoCh14G017920Silver-seed gourdcarcmoB0319
CmoCh14G017920Silver-seed gourdcarcmoB0328
CmoCh14G017920Silver-seed gourdcarcmoB0444
CmoCh14G017920Silver-seed gourdcarcmoB1049
CmoCh14G017920Silver-seed gourdcarcmoB1284
CmoCh14G017920Cucumber (Chinese Long) v3cmocucB0267
CmoCh14G017920Cucumber (Chinese Long) v3cmocucB0268
CmoCh14G017920Cucumber (Chinese Long) v3cmocucB0283