CmoCh14G013880 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G013880
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionDelta(9)-fatty-acid desaturase fat-6
LocationCmo_Chr14 : 11440030 .. 11444446 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTTTGAGTATTCAGCTAGGATGGGGATTGAATGGTGGCAATATGACCCTGGTTGGTATGTTATTGTGTTTCTTCAAGCGATTGGAGTGGCTACTCATGTCAAATTGCCATCTGAAACCCATAAGAAAAAGTTGGCCAAAGAGTACCTAAAAGAAGCCTTTCTTTAAGTGATGTTTTAAATAGAAATAATTATGCTTCTAGAAAAAATGTTTGAGAATGTGGAATTAAAAAAAATGCCAATATAAATTGGTGCTACTATTATAATCAATCTTTATGGAACAATTTACATTATGACCTTGGATGTTTTTGTGTTTAATTTTGTGTTCATTTTATGATTATTATCCCAAAATGTTATAAGATTCAAAAGGTGAAAAAAAAAAACTTCCTAATCCGAATATAGCACAATTCACAAATTGTAACAACGTCCCACCCGCTCCCCCGAATTTATCTCTAACCCACCTTATAACGACCTTAATTTTCTACTGACTTAAAGTCGCTACTCCATGCATGACATAATTTTTTTATGCTGAAACATTCATTTAAAACGACTTCATAAACGATGTCATTGACTTGTACGTTTATAAAAGGGTCTCAAAACAACACAAAGTAAATATTCAAAGTAAATTAAAAATAAAACCAAGAAAAATGTTAAAAGAGCAATGTCCTATACTAACCTAAGATCTATAAAAATAAATGCAACTACCCTATGCAGGTTCATGGTCTTTGATGTGATGCCACCGTTAGCCATATAGGAGTGCCTTGCGTTTACCTTAAATATAAGAATAGTACATGCTTGAGTATTTTAAGAAATACTCTGTGAGTGACCCAATCACTGGGGTCAATGAATTCAAATACATGCAATCATGAATAGGGACCTATAATTAAAATCATAGTCTTTTAGGTGGTCTCCAATCCGAATAATTGGACGTGTAGTACTTCTCTACACACGGCTCACATGTGTGAGCGTGGGCCCACCAGGTGAGCTGCACACCCCCTAGGTCTACTCGTTGGACTAGCTCCTCTTGTTCTCATGATTTTTTTTTTTTCTATAAATTAGACTTGATTTGAGACCTCTCCAAGGAATTTCAAGGAAATATGAGCTAAGTAAGTTCGGGAACTAAGCACCCCAATGTAATCGAATATGTAAGTAATTGTTTGAACTTTTCTATAAGAAATACTTGTATGAATCAACTGGAATTAGGTACGATAATTGTTAGCATGTATTAGTATAGGATGTTTTTAATTTTAATTTCTAGTTGATTCATACAAGTATTTCTTATAGAAACATCCAAACAATTACTTACATGTTCGTGCACGTTCAGATTCTTAGTTCTAGTAAAAATTCATGCTTATGAGTTAAACCAGTAAAAATTTCATATCATAGTAGCAGAAGCCCTAATTCATGCTTACAAGTTAAATCGGTAAAATTTTCATTTCCTAGGCTTAGATCTCAAATTTCATTTAGTATTGGCTTAGACTTAGGTTAGGATATGATATTTTTAATTTTAATGATTATTTATTTCATTTAGTATTTCGTTGTGTTGTTTTAAATATGTTTTCAAACACTTTAGTCCATGAGAGTGTTTTTAGATGAAGTTTATGTTTTATGTTGAAGTTGTAAACGCTTATTTTCGTACGAAAATGATTACGCTATGATGACAGTAGCGACTCTAAGTAGGTAGAAATCTTGGGTCGTTACACACTTATAATGCAAGTTATACATCCAATTTTTTCTGACATAGCGTTACTCTAAGATATACATACGTAATACTTGTCATATATTTCATGATTAACATATATGACTTTCTAATATCTCATAGGCATAGCGAACATATTAACATAGTTTACATGGTGTGGCATATGGTTGTTTATGTATCATACAACATCAATAACATAACATAGTTACATGACGTAGCATAATCATATCATAGGGTAATTGATAATATTGCATAAGTTGCAACATGACATAACATATATCATAATATAAACATAATATAACACACGTCAAACAATCATAAACCAAGATACATGCACGAGCCATAGGGCATGTGTCACTCATACAACAAACAAATCATCCAACCAACTAAGCCAACAGTAAAACTACTTACTTGGTTGGCCTAAACCGAAATCACTAAGCTCCTTTAATGCTAACTTAAAGCTACTTCGTGAAATCTAATTTCACCTCATGAGTCCCACAATCATAATTTAGAACTGATGACCAACATATCGTTTAGTGGTCTTTGTCTTTATGCACCGATTAGGGTTGAGCTAATCCTCGAGAGATAGGTGAGGAGTGATTAATCCCATTTTTTAAAAAACAAAATTGATCCTTCATTTTGTTTGTTGTTACTATACATATATATTGAACTTGGATGAAGTGCTTTATTCAATATTTTTAATACTTATCATTTTTTAAAATGGTTTTTTTTTAGGTAAAAGCAAAAGAGTGGTTGGTGGAGTTGAGAGAACTAACCATGGATAGCTATGGATGGAATTAATTGTATTTTTCAAATAAAGCTAGTAGTGTTTGGTTTGTTTGGTTAAAACACATGTCTACCAAATGCTTTTTAAAGAGGTACATGTCTTCCAAATGGTCCAAGTCGTTACTATGCATCAAATATAAATTTTTAATTTTATAATTTAATTCTAATAGCAAATTTAATTAATTACAATTAATGATGTAAATATCTTTTTTTTATTTTTCTAAAACAAAATATATTGCTTATATAATACCCTTCCAATTAGTCTTAAAATATTACATCCCATTAGGAGCAATACTATTCACTCCAATTGGAAAGGCTCAAGTTCATCACTAGTAGATGACTTTCCCTTTCAGACTTCCCCTCAATGTTTTTAAACAGTCTGCTAGGGAGAGGTTTTCACACCCTTAATTATATGAATCTCACATCATTCCTTACTCAATAGTGCGTTGTTCTATAACGGTTTTAAAAATAAGTGAAAATAACGTAATAAATTATCATTATTGGTGTTATTATAAGTATTATTATAACTACTACTGTATCTATCTATCCATCTCCTCCTAATCAAGATTATATTGCACTTAAATAATCTATACATTTAATTGGAAGAGCCTTAAATTTCTACTTTGAGACTTAAAAATTGAACTATAAATACATATGCAAGAGGTGGTAGTGAAGCCTCCAATGTCATTTGGGAAGAAAAAATGGACCAAGATTCACGTTTAAAAAACTGAAAATAATAATTCAGTTTAGTTATTCCAAATGTTTAATAAATTAGGATTATTTTGTCATTATTATTGTTGTTATTAATATTATTATTGCTGTGAATTATCTATCTTTTCATAATCATCATCATAATGGACCATGTTGAATTAGGCATATTTTCCTCATCTAACCTATATCTATTGCACTTGAATAAGCTAGGAAGAGCCTTAAATTATTTAGAATTGCACTATAAATATGTATGCAAGAGGTGGCGAGGCTTCCTCAACTAGAGCAACCCCACTCGAATGGATGCACCAACACAACCAAAGAGAATGGTAGAACCTCCATTGTCATTGGGGAAGAGAAAAGGAACAAGATAGACAAAAAAAATTGGCTCTTCTTATATTCATTTTGCATTTACTCTGTGTTTTCGCACCCTTTCAAATTAATAAGGCTGCCGTTTCGATTTGTATTATCCTATATATTATTACAGGTCTCTTCGGTGTCACTATTTCGTATCATCGAAATCTTTCACATAAGAGTTTCAAACTTCCTAAATGGCTTGAATATTTGTTTGCTTATTGTGGAGTTCATGCCTTTCAGGTTTGACAGTTAACTCATTTTTTTCTTTTACTTTTAATTGATTAATATGTTATGTTTTAAATATTTTATATATTTTATAAATAGGGTAATCCAATCGCTTGGGTGAATACGCATAGATATCATCATCAATTCGTTGATACTGAAAAAGACCCACATAGTTCAATTAATGGGTTTTGGTTCAGCCATCTTATTTGGTACCTCCAAGAGATTGATGAAAGCGCAAGTAAAATGATTGAAAGGGATCTGGAGAAGCAAACATTCTATAGGTTTCTTCGCAAAACATACATATATCATCTGATTGCTCTTGCGGTCATACTTTATAGCATGGGAGGCGCTCCTTTCTTCATTTGGGGAACGGTAACAAAAAAATACGTCTATCTTCATTTGTTTATGATAATTTGTCAAATGTGACACATTATTCTTTTGTAAGACAGTGTGTGAGAACGGTAATATATTTACATGCAATTTCTTCAGCAAATTCTATATGTCACATATGGGGAAAACGACCGTGGAAAACAAATAATTTATCCACAAACAATTGGTATGTATCTTGAGTCCATCTTTAAATCAATTTGGAGTAAAATATAATCACTTATTTATTGCATGAGCTTTTATTTCAGTCTTAA

mRNA sequence

ATGCCTTTGAGTATTCAGCTAGGATGGGGATTGAATGGTGGCAATATGACCCTGGTTGGTATGTTATTGTGTTTCTTCAAGCGATTGGAGTGGCTACTCATGTCAAATTGCCATCTGAAACCCATAAGAAAAAGTCTCTTCGGTGTCACTATTTCGTATCATCGAAATCTTTCACATAAGAGTTTCAAACTTCCTAAATGGCTTGAATATTTGTTTGCTTATTGTGGAGTTCATGCCTTTCAGGGTAATCCAATCGCTTGGGTGAATACGCATAGATATCATCATCAATTCGTTGATACTGAAAAAGACCCACATAGTTCAATTAATGGGTTTTGGTTCAGCCATCTTATTTGGTACCTCCAAGAGATTGATGAAAGCGCAAGTAAAATGATTGAAAGGGATCTGGAGAAGCAAACATTCTATAGGTTTCTTCGCAAAACATACATATATCATCTGATTGCTCTTGCGGTCATACTTTATAGCATGGGAGGCGCTCCTTTCTTCATTTGGGGAACGTCTTAA

Coding sequence (CDS)

ATGCCTTTGAGTATTCAGCTAGGATGGGGATTGAATGGTGGCAATATGACCCTGGTTGGTATGTTATTGTGTTTCTTCAAGCGATTGGAGTGGCTACTCATGTCAAATTGCCATCTGAAACCCATAAGAAAAAGTCTCTTCGGTGTCACTATTTCGTATCATCGAAATCTTTCACATAAGAGTTTCAAACTTCCTAAATGGCTTGAATATTTGTTTGCTTATTGTGGAGTTCATGCCTTTCAGGGTAATCCAATCGCTTGGGTGAATACGCATAGATATCATCATCAATTCGTTGATACTGAAAAAGACCCACATAGTTCAATTAATGGGTTTTGGTTCAGCCATCTTATTTGGTACCTCCAAGAGATTGATGAAAGCGCAAGTAAAATGATTGAAAGGGATCTGGAGAAGCAAACATTCTATAGGTTTCTTCGCAAAACATACATATATCATCTGATTGCTCTTGCGGTCATACTTTATAGCATGGGAGGCGCTCCTTTCTTCATTTGGGGAACGTCTTAA
Homology
[Close]
BLAST of CmoCh14G013880 vs. Swiss-Prot
Match: ADS3_ARATH (Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arabidopsis thaliana GN=ADS3 PE=1 SV=2)

HSP 1 Score: 184.9 bits (468), Expect = 7.5e-46
Identity = 89/160 (55.62%), Postives = 108/160 (67.50%), Query Frame = 1 

Query: 15  NMTLVGMLLCFFKRLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAY 74
           +M L+ +L  F  +  W  +S      I   L G+T+S+HRNLSHK+FKLPKWLEYLFAY
Sbjct: 111 SMHLLSLLAPF--QFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAY 170

Query: 75  CGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQE---IDESASKMI 134
           CG  A QGNPI WV+THRYHHQF D+++DPHS ++GFWFSH+ W                
Sbjct: 171 CGAQALQGNPIDWVSTHRYHHQFCDSDRDPHSPLDGFWFSHMNWMFDTNTITQRCGEPNN 230

Query: 135 ERDLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
             DLEKQ FYRFLR TYI H +ALAV LY+MGG PF +WG
Sbjct: 231 VGDLEKQPFYRFLRTTYILHPLALAVALYAMGGFPFIVWG 268

[Close]
BLAST of CmoCh14G013880 vs. Swiss-Prot
Match: ADS1_ARATH (Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1)

HSP 1 Score: 166.0 bits (419), Expect = 3.6e-40
Identity = 67/127 (52.76%), Postives = 93/127 (73.23%), Query Frame = 1 

Query: 48  GVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSS 107
           G+T+SYHRNL+H+SFK+PKWLEY FAYCG+ A QG+PI WV+THRYHHQF D+++DPHS 
Sbjct: 77  GITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDWVSTHRYHHQFTDSDRDPHSP 136

Query: 108 INGFWFSHLIWYLQE---IDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGG 167
             GFWFSHL+W       +++   +    DL++Q +Y+FL++T +YH++    +LY  GG
Sbjct: 137 NEGFWFSHLLWLFDTGYLVEKCGRRTNVEDLKRQWYYKFLQRTVLYHILTFGFLLYYFGG 196

Query: 168 APFFIWG 172
             F  WG
Sbjct: 197 LSFLTWG 203

[Close]
BLAST of CmoCh14G013880 vs. Swiss-Prot
Match: ADS2_ARATH (Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2)

HSP 1 Score: 164.9 bits (416), Expect = 8.1e-40
Identity = 69/127 (54.33%), Postives = 92/127 (72.44%), Query Frame = 1 

Query: 48  GVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSS 107
           G+T+SYHRNL+H+SFK+PKWLEYL AYC + A QG+PI WV+THRYHHQF D+E+DPHS 
Sbjct: 79  GITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTHRYHHQFTDSERDPHSP 138

Query: 108 INGFWFSHLIWYLQE---IDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGG 167
             GFWFSHL+W       + +   +    DL++Q FYRFL+KT ++H++ L   L+ +GG
Sbjct: 139 KEGFWFSHLLWIYDSAYLVSKCGRRANVEDLKRQWFYRFLQKTVLFHILGLGFFLFYLGG 198

Query: 168 APFFIWG 172
             F  WG
Sbjct: 199 MSFVTWG 205

[Close]
BLAST of CmoCh14G013880 vs. Swiss-Prot
Match: ICO5D_LIMDO (Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 4.9e-37
Identity = 68/130 (52.31%), Postives = 92/130 (70.77%), Query Frame = 1 

Query: 46  LFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPH 105
           + G+T+ +HR L+H  FKLPK +EY FAYCG  A QG+P+ WV+ HRYHHQFVDTE+D H
Sbjct: 124 VLGITLCFHRCLTHGGFKLPKLVEYFFAYCGSLALQGDPMEWVSNHRYHHQFVDTERDVH 183

Query: 106 SSINGFWFSHLIWYLQE---IDESASKMIE-RDLEKQTFYRFLRKTYIYHLIALAVILYS 165
           S   GFWF H+ W L +   +++   +     DL+KQ FYRFL+KTY+YH +AL  +LY 
Sbjct: 184 SPTQGFWFCHIGWVLDKDLFVEKRGGRRNNVNDLKKQAFYRFLQKTYMYHQLALIALLYY 243

Query: 166 MGGAPFFIWG 172
           +GG P+ +WG
Sbjct: 244 VGGFPYIVWG 253

[Close]
BLAST of CmoCh14G013880 vs. Swiss-Prot
Match: ADS32_ARATH (Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.2 PE=2 SV=3)

HSP 1 Score: 154.1 bits (388), Expect = 1.4e-36
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 1 

Query: 49  VTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSI 108
           +T+SYHRNLSH+SF LPKWLEYLFAY GV AFQG+PI WV+ HRYHH+  +T++DPHS  
Sbjct: 135 ITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQGDPIEWVSNHRYHHKHCETQRDPHSPT 194

Query: 109 NGFWFSHLIWYLQE---IDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGGA 168
            GFWFSH+ W       ++    +    DL +Q FYRFL++T + H++A + + Y  GG 
Sbjct: 195 QGFWFSHMAWIFDTSSILENCGGEENVDDLVRQPFYRFLQRTVLLHMMAYSFLFYFCGGM 254

Query: 169 PFFIWG 172
           P  +WG
Sbjct: 255 PLLVWG 260

[Close]
BLAST of CmoCh14G013880 vs. TrEMBL
Match: A0A0A0KVH2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006060 PE=3 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.5e-45
Identity = 95/177 (53.67%), Postives = 111/177 (62.71%), Query Frame = 1 

Query: 22  LLCFFK--RLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHA 81
           LLC F   +  W          +   LFG+TISYHRNL+HKSF+LPKWLEY FAYCGVH 
Sbjct: 57  LLCIFAPFQFNWSAFRVTVALIVITGLFGMTISYHRNLAHKSFQLPKWLEYSFAYCGVHC 116

Query: 82  FQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQEID---------ESASKM 141
            QG+P+ WV+THR HHQFVD+EKDPHS INGFW SH++W                S  K 
Sbjct: 117 LQGDPLDWVSTHRCHHQFVDSEKDPHSPINGFWISHMMWLFDSYTLTNKVCPKYSSDLKK 176

Query: 142 IER----------------DLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
           IER                DLEKQ FYRF+ KTY+ H +ALA+ILYS+GG PFFIWG
Sbjct: 177 IERNMFVIFTKHGKPDNVGDLEKQRFYRFIHKTYMLHHLALAIILYSIGGVPFFIWG 233

[Close]
BLAST of CmoCh14G013880 vs. TrEMBL
Match: A0A0A0KTK9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006050 PE=3 SV=1)

HSP 1 Score: 188.3 bits (477), Expect = 7.6e-45
Identity = 84/134 (62.69%), Postives = 101/134 (75.37%), Query Frame = 1 

Query: 46  LFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPH 105
           LFG+T+S+HRNLSH+SFKLPKWLEYLFAYCGV A QGNPI WV+THRYHHQF D+E+DPH
Sbjct: 55  LFGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQALQGNPIDWVSTHRYHHQFCDSERDPH 114

Query: 106 SSINGFWFSHLIWYLQEIDESASKMIER--------DLEKQTFYRFLRKTYIYHLIALAV 165
           S I GFWFSH+ W         + ++ER        DLEKQ FY+F++ TY+ H IAL  
Sbjct: 115 SPIEGFWFSHMSWLF-----DTNSVVERCGEPNNVGDLEKQPFYKFIQTTYLLHPIALGA 174

Query: 166 ILYSMGGAPFFIWG 172
           +LYSMGG PF +WG
Sbjct: 175 LLYSMGGFPFIVWG 183

[Close]
BLAST of CmoCh14G013880 vs. TrEMBL
Match: E4MVQ1_EUTHA (mRNA, clone: RTFL01-01-G02 OS=Eutrema halophilum PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 1 

Query: 15  NMTLVGMLLCFFKRLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAY 74
           +M L+ +L  F  +  W  +S      I   L G+T+S+HRNLSHKSFKLPKWLEYLFAY
Sbjct: 115 SMHLLSLLAPF--QFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKSFKLPKWLEYLFAY 174

Query: 75  CGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYL------QEIDESAS 134
           CG  A QGNPI WV+THRYHHQF D+++DPHS + GFWFSH+ W        Q + E  +
Sbjct: 175 CGAQALQGNPIDWVSTHRYHHQFCDSDRDPHSPLEGFWFSHMNWMFDTNTITQRVGEPNN 234

Query: 135 KMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
                DLEKQ+FYRFLR TYI+H +ALAV LY++GG PF +WG
Sbjct: 235 ---VGDLEKQSFYRFLRSTYIWHPVALAVALYAIGGFPFIVWG 272

[Close]
BLAST of CmoCh14G013880 vs. TrEMBL
Match: V4M0M6_EUTSA (Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020955mg PE=3 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 91/163 (55.83%), Postives = 113/163 (69.33%), Query Frame = 1 

Query: 15  NMTLVGMLLCFFKRLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAY 74
           +M L+ +L  F  +  W  +S      I   L G+T+S+HRNLSHKSFKLPKWLEYLFAY
Sbjct: 115 SMHLLSLLAPF--QFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKSFKLPKWLEYLFAY 174

Query: 75  CGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYL------QEIDESAS 134
           CG  A QGNPI WV+THRYHHQF D+++DPHS + GFWFSH+ W        Q + E  +
Sbjct: 175 CGAQALQGNPIDWVSTHRYHHQFCDSDRDPHSPLEGFWFSHMNWMFDTNTITQRVGEPNN 234

Query: 135 KMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
                DLEKQ+FYRFLR TYI+H +ALAV LY++GG PF +WG
Sbjct: 235 ---VGDLEKQSFYRFLRSTYIWHPVALAVALYAIGGFPFIVWG 272

[Close]
BLAST of CmoCh14G013880 vs. TrEMBL
Match: A0A067KLF1_JATCU (Fatty acid desaturase 5 OS=Jatropha curcas GN=JCGZ_06132 PE=2 SV=1)

HSP 1 Score: 187.6 bits (475), Expect = 1.3e-44
Identity = 83/134 (61.94%), Postives = 103/134 (76.87%), Query Frame = 1 

Query: 46  LFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPH 105
           L G+T+S+HRNLSH+SFKLPKWLEYLFAYCGV AFQGNPI WV+THRYHHQF D+E+DPH
Sbjct: 141 LLGITLSFHRNLSHRSFKLPKWLEYLFAYCGVQAFQGNPIDWVSTHRYHHQFCDSERDPH 200

Query: 106 SSINGFWFSHLIWYLQEIDESASKMIER--------DLEKQTFYRFLRKTYIYHLIALAV 165
           S + GFW+SH+ W        +S +IER        DLEKQ FY+F++ TYI H IAL V
Sbjct: 201 SPVEGFWYSHISWMF-----DSSSIIERCGGQTNVGDLEKQPFYKFIQNTYILHPIALGV 260

Query: 166 ILYSMGGAPFFIWG 172
           +LY++GG P+ +WG
Sbjct: 261 LLYAIGGFPYLVWG 269

[Close]
BLAST of CmoCh14G013880 vs. TAIR10
Match: AT3G15850.1 (AT3G15850.1 fatty acid desaturase 5)

HSP 1 Score: 184.9 bits (468), Expect = 4.3e-47
Identity = 89/160 (55.62%), Postives = 108/160 (67.50%), Query Frame = 1 

Query: 15  NMTLVGMLLCFFKRLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAY 74
           +M L+ +L  F  +  W  +S      I   L G+T+S+HRNLSHK+FKLPKWLEYLFAY
Sbjct: 111 SMHLLSLLAPF--QFNWRAVSVAFGLYIVTGLLGITLSFHRNLSHKAFKLPKWLEYLFAY 170

Query: 75  CGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQE---IDESASKMI 134
           CG  A QGNPI WV+THRYHHQF D+++DPHS ++GFWFSH+ W                
Sbjct: 171 CGAQALQGNPIDWVSTHRYHHQFCDSDRDPHSPLDGFWFSHMNWMFDTNTITQRCGEPNN 230

Query: 135 ERDLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
             DLEKQ FYRFLR TYI H +ALAV LY+MGG PF +WG
Sbjct: 231 VGDLEKQPFYRFLRTTYILHPLALAVALYAMGGFPFIVWG 268

[Close]
BLAST of CmoCh14G013880 vs. TAIR10
Match: AT1G06080.1 (AT1G06080.1 delta 9 desaturase 1)

HSP 1 Score: 166.0 bits (419), Expect = 2.0e-41
Identity = 67/127 (52.76%), Postives = 93/127 (73.23%), Query Frame = 1 

Query: 48  GVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSS 107
           G+T+SYHRNL+H+SFK+PKWLEY FAYCG+ A QG+PI WV+THRYHHQF D+++DPHS 
Sbjct: 77  GITVSYHRNLAHRSFKVPKWLEYFFAYCGLLAIQGDPIDWVSTHRYHHQFTDSDRDPHSP 136

Query: 108 INGFWFSHLIWYLQE---IDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGG 167
             GFWFSHL+W       +++   +    DL++Q +Y+FL++T +YH++    +LY  GG
Sbjct: 137 NEGFWFSHLLWLFDTGYLVEKCGRRTNVEDLKRQWYYKFLQRTVLYHILTFGFLLYYFGG 196

Query: 168 APFFIWG 172
             F  WG
Sbjct: 197 LSFLTWG 203

[Close]
BLAST of CmoCh14G013880 vs. TAIR10
Match: AT2G31360.1 (AT2G31360.1 16:0delta9 desaturase 2)

HSP 1 Score: 164.9 bits (416), Expect = 4.6e-41
Identity = 69/127 (54.33%), Postives = 92/127 (72.44%), Query Frame = 1 

Query: 48  GVTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSS 107
           G+T+SYHRNL+H+SFK+PKWLEYL AYC + A QG+PI WV+THRYHHQF D+E+DPHS 
Sbjct: 79  GITVSYHRNLAHRSFKVPKWLEYLLAYCALLAIQGDPIDWVSTHRYHHQFTDSERDPHSP 138

Query: 108 INGFWFSHLIWYLQE---IDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGG 167
             GFWFSHL+W       + +   +    DL++Q FYRFL+KT ++H++ L   L+ +GG
Sbjct: 139 KEGFWFSHLLWIYDSAYLVSKCGRRANVEDLKRQWFYRFLQKTVLFHILGLGFFLFYLGG 198

Query: 168 APFFIWG 172
             F  WG
Sbjct: 199 MSFVTWG 205

[Close]
BLAST of CmoCh14G013880 vs. TAIR10
Match: AT3G15870.1 (AT3G15870.1 Fatty acid desaturase family protein)

HSP 1 Score: 154.1 bits (388), Expect = 8.0e-38
Identity = 66/126 (52.38%), Postives = 88/126 (69.84%), Query Frame = 1 

Query: 49  VTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSI 108
           +T+SYHRNLSH+SF LPKWLEYLFAY GV AFQG+PI WV+ HRYHH+  +T++DPHS  
Sbjct: 135 ITLSYHRNLSHRSFDLPKWLEYLFAYGGVLAFQGDPIEWVSNHRYHHKHCETQRDPHSPT 194

Query: 109 NGFWFSHLIWYLQE---IDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMGGA 168
            GFWFSH+ W       ++    +    DL +Q FYRFL++T + H++A + + Y  GG 
Sbjct: 195 QGFWFSHMAWIFDTSSILENCGGEENVDDLVRQPFYRFLQRTVLLHMMAYSFLFYFCGGM 254

Query: 169 PFFIWG 172
           P  +WG
Sbjct: 255 PLLVWG 260

[Close]
BLAST of CmoCh14G013880 vs. TAIR10
Match: AT1G06100.1 (AT1G06100.1 Fatty acid desaturase family protein)

HSP 1 Score: 151.0 bits (380), Expect = 6.8e-37
Identity = 65/127 (51.18%), Postives = 91/127 (71.65%), Query Frame = 1 

Query: 49  VTISYHRNLSHKSFKLPKWLEYLFAYCGVHAFQGNPIAWVNTHRYHHQFVDTEKDPHSSI 108
           +T SYHRNL+H+SFKLPKWLEY FAY  + A QG+P+ WV+ HR+HHQF D+++DPHS I
Sbjct: 72  ITFSYHRNLTHRSFKLPKWLEYPFAYSALLALQGDPLDWVSIHRFHHQFTDSDRDPHSPI 131

Query: 109 NGFWFSHLIW-----YLQEIDESASKMIERDLEKQTFYRFLRKTYIYHLIALAVILYSMG 168
            GFWFSH++W     Y++E  +   +    DL++Q FYRFL+KT + H++A   ++Y  G
Sbjct: 132 EGFWFSHVLWIFDTDYIRE--KCGRRNNVMDLKQQWFYRFLKKTLVLHILAFWTLIYLWG 191

Query: 169 GAPFFIW 171
           G P+  W
Sbjct: 192 GLPYLTW 196

[Close]
BLAST of CmoCh14G013880 vs. NCBI nr
Match: gi|659108477|ref|XP_008454220.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like isoform X3 [Cucumis melo])

HSP 1 Score: 216.9 bits (551), Expect = 2.9e-53
Identity = 103/161 (63.98%), Postives = 122/161 (75.78%), Query Frame = 1 

Query: 22  LLCFFK--RLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHA 81
           LLC F   ++ W   S C +     SLFG+TISYHRNLSHKSF++PKWLEYLFAYCGVHA
Sbjct: 39  LLCIFAPFQINWGAFSICLVLFTITSLFGITISYHRNLSHKSFQIPKWLEYLFAYCGVHA 98

Query: 82  FQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQEIDESASKMIER------ 141
            QGNPI WV+THRYHHQFVDTE+DPH+ I+GFWF ++IW L+E D S + M  +      
Sbjct: 99  LQGNPINWVSTHRYHHQFVDTEQDPHTPIHGFWFGYIIWILEEKDGSIAGMNRKHRKLDN 158

Query: 142 --DLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWGT 173
             DLEKQ FYRF+RKTY+ H IALA+ILY +GG PFFIWGT
Sbjct: 159 ASDLEKQIFYRFIRKTYLLHPIALAIILYVIGGFPFFIWGT 199

[Close]
BLAST of CmoCh14G013880 vs. NCBI nr
Match: gi|659108475|ref|XP_008454218.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like isoform X2 [Cucumis melo])

HSP 1 Score: 212.6 bits (540), Expect = 5.4e-52
Identity = 100/161 (62.11%), Postives = 119/161 (73.91%), Query Frame = 1 

Query: 22  LLCFFK--RLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHA 81
           +LC F      W       +  +   LFG++ISYHRNLSHKSFKLPKWLEY+FAYCGVHA
Sbjct: 39  VLCIFAPFHFNWSAFWVAFVLYVLTGLFGISISYHRNLSHKSFKLPKWLEYVFAYCGVHA 98

Query: 82  FQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQEIDESASKMIER------ 141
           FQGNPI WV+THRYHHQFVDTE+DPH+ I+GFWF ++IW L+E D S + M  +      
Sbjct: 99  FQGNPINWVSTHRYHHQFVDTEQDPHTPIHGFWFGYIIWILEEKDGSIAGMNRKHRKLDN 158

Query: 142 --DLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWGT 173
             DLEKQ FYRF+RKTY+ H IALA+ILY +GG PFFIWGT
Sbjct: 159 ASDLEKQIFYRFIRKTYLLHPIALAIILYVIGGFPFFIWGT 199

[Close]
BLAST of CmoCh14G013880 vs. NCBI nr
Match: gi|659108481|ref|XP_008454222.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic-like [Cucumis melo])

HSP 1 Score: 193.4 bits (490), Expect = 3.4e-46
Identity = 97/177 (54.80%), Postives = 112/177 (63.28%), Query Frame = 1 

Query: 22  LLCFFK--RLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHA 81
           LLC F   +  W          +   LFG+TISYHRNL+HKSF+LPKWLEYLFAYCGVHA
Sbjct: 63  LLCIFAPFQFNWSAFRVAVALKVITGLFGMTISYHRNLAHKSFQLPKWLEYLFAYCGVHA 122

Query: 82  FQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQEID---------ESASKM 141
            QG+PI WV+THR HHQFVDTEKDPHS INGFW SH++W                S  K 
Sbjct: 123 LQGDPIDWVSTHRCHHQFVDTEKDPHSPINGFWISHMMWLFDSYTLTNKVCPKYSSDLKK 182

Query: 142 IER----------------DLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
           IER                DLEKQ FYRF+ KTY+ H + LA+ILY++GG PFFIWG
Sbjct: 183 IERNMFVIFTKHGKPDNVGDLEKQRFYRFIHKTYMLHHLTLAIILYNVGGLPFFIWG 239

[Close]
BLAST of CmoCh14G013880 vs. NCBI nr
Match: gi|449468972|ref|XP_004152195.1| (PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 6.4e-45
Identity = 95/177 (53.67%), Postives = 111/177 (62.71%), Query Frame = 1 

Query: 22  LLCFFK--RLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHA 81
           LLC F   +  W          +   LFG+TISYHRNL+HKSF+LPKWLEY FAYCGVH 
Sbjct: 40  LLCIFAPFQFNWSAFRVTVALIVITGLFGMTISYHRNLAHKSFQLPKWLEYSFAYCGVHC 99

Query: 82  FQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQEID---------ESASKM 141
            QG+P+ WV+THR HHQFVD+EKDPHS INGFW SH++W                S  K 
Sbjct: 100 LQGDPLDWVSTHRCHHQFVDSEKDPHSPINGFWISHMMWLFDSYTLTNKVCPKYSSDLKK 159

Query: 142 IER----------------DLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
           IER                DLEKQ FYRF+ KTY+ H +ALA+ILYS+GG PFFIWG
Sbjct: 160 IERNMFVIFTKHGKPDNVGDLEKQRFYRFIHKTYMLHHLALAIILYSIGGVPFFIWG 216

[Close]
BLAST of CmoCh14G013880 vs. NCBI nr
Match: gi|700197741|gb|KGN52899.1| (hypothetical protein Csa_4G006060 [Cucumis sativus])

HSP 1 Score: 189.1 bits (479), Expect = 6.4e-45
Identity = 95/177 (53.67%), Postives = 111/177 (62.71%), Query Frame = 1 

Query: 22  LLCFFK--RLEWLLMSNCHLKPIRKSLFGVTISYHRNLSHKSFKLPKWLEYLFAYCGVHA 81
           LLC F   +  W          +   LFG+TISYHRNL+HKSF+LPKWLEY FAYCGVH 
Sbjct: 57  LLCIFAPFQFNWSAFRVTVALIVITGLFGMTISYHRNLAHKSFQLPKWLEYSFAYCGVHC 116

Query: 82  FQGNPIAWVNTHRYHHQFVDTEKDPHSSINGFWFSHLIWYLQEID---------ESASKM 141
            QG+P+ WV+THR HHQFVD+EKDPHS INGFW SH++W                S  K 
Sbjct: 117 LQGDPLDWVSTHRCHHQFVDSEKDPHSPINGFWISHMMWLFDSYTLTNKVCPKYSSDLKK 176

Query: 142 IER----------------DLEKQTFYRFLRKTYIYHLIALAVILYSMGGAPFFIWG 172
           IER                DLEKQ FYRF+ KTY+ H +ALA+ILYS+GG PFFIWG
Sbjct: 177 IERNMFVIFTKHGKPDNVGDLEKQRFYRFIHKTYMLHHLALAIILYSIGGVPFFIWG 233

The following BLAST results are available for this feature:
BLAST of CmoCh14G013880 vs. Swiss-Prot
Match NameE-valueIdentityDescription
ADS3_ARATH7.5e-4655.63Palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplastic OS=Arab... [more]
ADS1_ARATH3.6e-4052.76Delta-9 acyl-lipid desaturase 1 OS=Arabidopsis thaliana GN=ADS1 PE=2 SV=1[more]
ADS2_ARATH8.1e-4054.33Delta-9 acyl-lipid desaturase 2 OS=Arabidopsis thaliana GN=ADS2 PE=2 SV=2[more]
ICO5D_LIMDO4.9e-3752.31Icosanoyl-CoA 5-desaturase (Fragment) OS=Limnanthes douglasii PE=1 SV=1[more]
ADS32_ARATH1.4e-3652.38Probable lipid desaturase ADS3.2, chloroplastic OS=Arabidopsis thaliana GN=ADS3.... [more]
BLAST of CmoCh14G013880 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KVH2_CUCSA4.5e-4553.67Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006060 PE=3 SV=1[more]
A0A0A0KTK9_CUCSA7.6e-4562.69Uncharacterized protein OS=Cucumis sativus GN=Csa_4G006050 PE=3 SV=1[more]
E4MVQ1_EUTHA1.3e-4455.83mRNA, clone: RTFL01-01-G02 OS=Eutrema halophilum PE=2 SV=1[more]
V4M0M6_EUTSA1.3e-4455.83Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10020955mg PE=3 SV=1[more]
A0A067KLF1_JATCU1.3e-4461.94Fatty acid desaturase 5 OS=Jatropha curcas GN=JCGZ_06132 PE=2 SV=1[more]
BLAST of CmoCh14G013880 vs. TAIR10
Match NameE-valueIdentityDescription
AT3G15850.14.3e-4755.63 fatty acid desaturase 5[more]
AT1G06080.12.0e-4152.76 delta 9 desaturase 1[more]
AT2G31360.14.6e-4154.33 16:0delta9 desaturase 2[more]
AT3G15870.18.0e-3852.38 Fatty acid desaturase family protein[more]
AT1G06100.16.8e-3751.18 Fatty acid desaturase family protein[more]
BLAST of CmoCh14G013880 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108477|ref|XP_008454220.1|2.9e-5363.98PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas... [more]
gi|659108475|ref|XP_008454218.1|5.4e-5262.11PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas... [more]
gi|659108481|ref|XP_008454222.1|3.4e-4654.80PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas... [more]
gi|449468972|ref|XP_004152195.1|6.4e-4553.67PREDICTED: palmitoyl-monogalactosyldiacylglycerol delta-7 desaturase, chloroplas... [more]
gi|700197741|gb|KGN52899.1|6.4e-4553.67hypothetical protein Csa_4G006060 [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005804FA_desaturase_dom
IPR015876Acyl-CoA_DS
Vocabulary: Biological Process
TermDefinition
GO:0006629lipid metabolic process
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016717oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044249 cellular biosynthetic process
biological_process GO:0006631 fatty acid metabolic process
biological_process GO:0008610 lipid biosynthetic process
biological_process GO:0055114 oxidation-reduction process
biological_process GO:0006629 lipid metabolic process
cellular_component GO:0005575 cellular_component
molecular_function GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G013880.1CmoCh14G013880.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005804Fatty acid desaturase domainPFAMPF00487FA_desaturasecoord: 47..170
score: 4.
IPR015876Fatty acid desaturase, type 1, corePRINTSPR00075FACDDSATRASEcoord: 54..74
score: 2.5E-11coord: 91..120
score: 2.5
NoneNo IPR availablePANTHERPTHR11351ACYL-COA DESATURASEcoord: 47..171
score: 1.3
NoneNo IPR availablePANTHERPTHR11351:SF2DELTA-9 ACYL-LIPID DESATURASE 1-RELATEDcoord: 47..171
score: 1.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G013880Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G013880Cucurbita maxima (Rimu)cmacmoB461
CmoCh14G013880Wild cucumber (PI 183967)cmocpiB268
CmoCh14G013880Cucumber (Chinese Long) v2cmocuB245
CmoCh14G013880Melon (DHL92) v3.5.1cmomeB205
CmoCh14G013880Melon (DHL92) v3.5.1cmomeB232
CmoCh14G013880Watermelon (Charleston Gray)cmowcgB201
CmoCh14G013880Watermelon (Charleston Gray)cmowcgB230
CmoCh14G013880Watermelon (97103) v1cmowmB218
CmoCh14G013880Cucurbita pepo (Zucchini)cmocpeB244
CmoCh14G013880Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G013880Bottle gourd (USVL1VR-Ls)cmolsiB225
CmoCh14G013880Bottle gourd (USVL1VR-Ls)cmolsiB244
CmoCh14G013880Silver-seed gourdcarcmoB0163
CmoCh14G013880Cucumber (Gy14) v2cgybcmoB455
CmoCh14G013880Cucumber (Gy14) v2cgybcmoB897
CmoCh14G013880Melon (DHL92) v3.6.1cmomedB232
CmoCh14G013880Melon (DHL92) v3.6.1cmomedB264
CmoCh14G013880Silver-seed gourdcarcmoB0283
CmoCh14G013880Cucumber (Chinese Long) v3cmocucB0291
CmoCh14G013880Cucumber (Chinese Long) v3cmocucB0317
CmoCh14G013880Watermelon (97103) v2cmowmbB255
CmoCh14G013880Watermelon (97103) v2cmowmbB261
CmoCh14G013880Wax gourdcmowgoB0306
CmoCh14G013880Wax gourdcmowgoB0327
CmoCh14G013880Cucurbita moschata (Rifu)cmocmoB202
CmoCh14G013880Cucurbita moschata (Rifu)cmocmoB234
CmoCh14G013880Wild cucumber (PI 183967)cmocpiB250
CmoCh14G013880Cucumber (Gy14) v1cgycmoB0186
CmoCh14G013880Cucumber (Gy14) v1cgycmoB0235