CmoCh14G013780 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G013780
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA polymerase theta
Location	Cmo_Chr14 : 11364665 .. 11365852 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGACAATGGAAGAGCATATCGATTATGAGGATGAATGGATCATTGATTCAGGATGCTTAAACCACATGATTGACGATCAAAGCGGTGCAATGGAAGAGGGGTGGCCCTTAGAGAAGGAAGTATTACCACGCCTTGAGCAAACTGAAGAAATTCTTCTCCAGGACATGGGGGAGCAAACTGAAGAAATTCTTCTCCAGGACATGGGGGAGCAAATTGAAGAAATTCTTCTCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCTCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCCACAAAAGACGGGGGGAGCAAATCAAATTGTACACATTTGCTCAAGTGCTGATATGCCTGAAGATTCAAATGACACTAGTGTTGGCGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAGAAATAATCCTAAAGGAAAATCTAGAGTATGCCAACGCAGTAGAAGACGAAGTTAATGAGCCAGAGACATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGAAGAAACTATAGCCCTAGAACAAAATCAGACTTGGGAATTAGTGTCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTCAAGAATATGGACTAGATTATGATGAAACGATTAGTCCAGTGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCAGGGAGAGTTAAATAGAGAGTTCTACATGGACCAACCGAAAAAATTCGAAAATGAAGTTGGAGTCATTGATCAATATATGCAAAATCTGAAGAAGCCTTATTTGGATGCAGCTCGACCGACCTTAAGATATGTCAAAGGAGACCACGATACTCGAAGATCAATCACTGGGTATGTGTTCAAGCTCGGTTCAAGAACAATTTTTTGGTGTAACAAAAGACAACCAACAATATCATTGTCAACTAAAGAAGTAGAGTACAGAGCAGTAGCTGGAGCAACTCAGGAAAATACATGCTTTAAACTTTTGATGGAAGATTGGCACTAG

mRNA sequence

ATGGCGACAATGGAAGAGCATATCGATTATGAGGATGAATGGATCATTGATTCAGGATGCTTAAACCACATGATTGACGATCAAAGCGGTGCAATGGAAGAGGGGTGGCCCTTAGAGAAGGAAGTATTACCACGCCTTGAGCAAACTGAAGAAATTCTTCTCCAGGACATGGGGGAGCAAACTGAAGAAATTCTTCTCCAGGACATGGGGGAGCAAATTGAAGAAATTCTTCTCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCTCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCCACAAAAGACGGGGGGAGCAAATCAAATTGTACACATTTGCTCAAGTGCTGATATGCCTGAAGATTCAAATGACACTAGTGTTGGCGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAGAAATAATCCTAAAGGAAAATCTAGAGTATGCCAACGCAGTAGAAGACGAAGTTAATGAGCCAGAGACATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGAAGAAACTATAGCCCTAGAACAAAATCAGACTTGGGAATTAGTGTCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTCAAGAATATGGACTAGATTATGATGAAACGATTAGTCCAGTGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCAGGGAGAGTTAAATAGAGAGTTCTACATGGACCAACCGAAAAAATTCGAAAATGAAGTTGGAGTCATTGATCAATATATGCAAAATCTGAAGAAGCCTTATTTGGATGCAGCTCGACCGACCTTAAGATATGTCAAAGGAGACCACGATACTCGAAGATCAATCACTGGGTATGTGTTCAAGCTCGGTTCAAGAACAATTTTTTGGTGTAACAAAAGACAACCAACAATATCATTGTCAACTAAAGAAGTAGAGTACAGAGCAGTAGCTGGAGCAACTCAGGAAAATACATGCTTTAAACTTTTGATGGAAGATTGGCACTAG

Coding sequence (CDS)

ATGGCGACAATGGAAGAGCATATCGATTATGAGGATGAATGGATCATTGATTCAGGATGCTTAAACCACATGATTGACGATCAAAGCGGTGCAATGGAAGAGGGGTGGCCCTTAGAGAAGGAAGTATTACCACGCCTTGAGCAAACTGAAGAAATTCTTCTCCAGGACATGGGGGAGCAAACTGAAGAAATTCTTCTCCAGGACATGGGGGAGCAAATTGAAGAAATTCTTCTCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCTCCAGAACATAGGGGAGCAAACTGAAGAGATTCTTCCACAAAAGACGGGGGGAGCAAATCAAATTGTACACATTTGCTCAAGTGCTGATATGCCTGAAGATTCAAATGACACTAGTGTTGGCGAGCAAGAAGTGACTCAACCAAGCGAGCCTAGTGAAAATGAAATGACACCTCAACAACTCAGACATTCAGAAATAATCCTAAAGGAAAATCTAGAGTATGCCAACGCAGTAGAAGACGAAGTTAATGAGCCAGAGACATATGAAGAAGCATCACAAAACTCAGCTTGGCAGAAAGCAATGGAGGAAGAAACTATAGCCCTAGAACAAAATCAGACTTGGGAATTAGTGTCAAGACCAAGAGATACCAAACTCATCTCTTGCAAGTGGGCTTACGAAATAATGTGTACCCCGGATGGATCAATCGTGAGATACAAAGCTCAGACTATAGATTCAGGGTTCTCTCAAGAATATGGACTAGATTATGATGAAACGATTAGTCCAGTGGCAAAGATCATTATCGTACAAGTTCCTCCAGTACTTACGGTAAATAAAGATTGGAAATTATGGCAGATGGATATGAATAATGCTTTCTTGCAGGGAGAGTTAAATAGAGAGTTCTACATGGACCAACCGAAAAAATTCGAAAATGAAGTTGGAGTCATTGATCAATATATGCAAAATCTGAAGAAGCCTTATTTGGATGCAGCTCGACCGACCTTAAGATATGTCAAAGGAGACCACGATACTCGAAGATCAATCACTGGGTATGTGTTCAAGCTCGGTTCAAGAACAATTTTTTGGTGTAACAAAAGACAACCAACAATATCATTGTCAACTAAAGAAGTAGAGTACAGAGCAGTAGCTGGAGCAACTCAGGAAAATACATGCTTTAAACTTTTGATGGAAGATTGGCACTAG

Homology

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BLAST of CmoCh14G013780 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 98.6 bits (244), Expect = 1.6e-19
Identity = 77/283 (27.21%), Postives = 140/283 (49.47%), Query Frame = 1


Query: 30  GAMEEGWPLEKEVLPRLEQTEEILLQDMGEQTEEILLQDMGEQIEEILLQNIGEQTEEIL 89
           G  E G+ L   V  ++ ++ +++ ++   +T      DM E+++  ++ N         
Sbjct: 680 GDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAA----DMSEKVKNGIIPNFVTIPSTSN 739

Query: 90  LQNIGEQTEEILPQKTGGANQIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQ 149
                E T + + ++     +++         E       G +EV  P++  E     Q 
Sbjct: 740 NPTSAESTTDEVSEQGEQPGEVI---------EQGEQLDEGVEEVEHPTQGEEQH---QP 799

Query: 150 LRHSEIILKENLEYANA----VEDEVNEPETYEEA---SQNSAWQKAMEEETIALEQNQT 209
           LR SE    E+  Y +     + D+  EPE+ +E     + +   KAM+EE  +L++N T
Sbjct: 800 LRRSERPRVESRRYPSTEYVLISDD-REPESLKEVLSHPEKNQLMKAMQEEMESLQKNGT 859

Query: 210 WELVSRPRDTKLISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKII 269
           ++LV  P+  + + CKW +++    D  +VRYKA+ +  GF Q+ G+D+DE  SPV K+ 
Sbjct: 860 YKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMT 919

Query: 270 IVQVPPVLTVNKDWKLWQMDMNNAFLQGELNREFYMDQPKKFE 306
            ++    L  + D ++ Q+D+  AFL G+L  E YM+QP+ FE
Sbjct: 920 SIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFE 945

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BLAST of CmoCh14G013780 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 89.4 bits (220), Expect = 9.9e-17
Identity = 52/165 (31.52%), Postives = 87/165 (52.73%), Query Frame = 1


Query: 141  SENEMTPQQLRHSEIILKENLEYANAVEDEVNEPETYEEAS---QNSAWQKAMEEETIAL 200
            SE   T  Q+ ++E     N    NA     + P +++E       S+W++A+  E  A 
Sbjct: 858  SERLKTKPQISYNEEDNSLNKVVLNAHTIFNDVPNSFDEIQYRDDKSSWEEAINTELNAH 917

Query: 201  EQNQTWELVSRPRDTKLISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISP 260
            + N TW +  RP +  ++  +W + +     G+ +RYKA+ +  GF+Q+Y +DY+ET +P
Sbjct: 918  KINNTWTITKRPENKNIVDSRWVFSVKYNELGNPIRYKARLVARGFTQKYQIDYEETFAP 977

Query: 261  VAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQGELNREFYMDQPK 303
            VA+I   +    L +  + K+ QMD+  AFL G L  E YM  P+
Sbjct: 978  VARISSFRFILSLVIQYNLKVHQMDVKTAFLNGTLKEEIYMRLPQ 1022

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BLAST of CmoCh14G013780 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 8.1e-11
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 156 ILKENLEYANAVEDEVN-EPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 215
           I K N +Y+  +   +  EP++   A ++  W +AM+EE  AL +N+TW LV  P +  +
Sbjct: 9   INKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68

Query: 216 ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQ 266
           + CKW ++     DG++ R KA+ +  GF QE G+ + ET SPV +   ++
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIR 119

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BLAST of CmoCh14G013780 vs. TrEMBL
Match: I1J3P8_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 98   EEILPQKTGGANQIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQLRHSEIIL 157
            EE++ ++    +Q +   S  +    S   S  +  + QP EP + E   Q+LR S    
Sbjct: 805  EEVIEEER---DQKLETPSEGERSSPSKTKSPWKTGIHQPEEP-QTEEHDQELRRSTRPR 864

Query: 158  KENLEYANAV---EDEVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 217
            K N  YANA    E    EP +YEEA++   WQKAMEEE  AL++NQTW+LV +P+D K 
Sbjct: 865  KPNPRYANAALADESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKDVKP 924

Query: 218  ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNK 277
            ISCKW Y++    DGSI RYKA+ +  GFSQEYGLDY+ET SPVAKI  V+V   L  +K
Sbjct: 925  ISCKWVYKVKTRTDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASK 984

Query: 278  DWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
             W+LWQMD+ NAFL GEL++E YM+QPK FE++
Sbjct: 985  SWELWQMDVKNAFLHGELDKEIYMEQPKGFESK 1013

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BLAST of CmoCh14G013780 vs. TrEMBL
Match: I1J0P4_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 98   EEILPQKTGGANQIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQLRHSEIIL 157
            EE++ ++    +Q +   S  +    S   S  +  + QP EP + E   Q+LR S    
Sbjct: 837  EEVIEEER---DQKLETPSEGERSSPSKTKSPWKTGIHQPEEP-QTEEHDQELRRSTRPR 896

Query: 158  KENLEYANAV---EDEVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 217
            K N  YANA    E    EP +YEEA++   WQKAMEEE  AL++NQTW+LV +P+D K 
Sbjct: 897  KPNPRYANAALADESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKDVKP 956

Query: 218  ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNK 277
            ISCKW Y++    DGSI RYKA+ +  GFSQEYGLDY+ET SPVAKI  V+V   L  +K
Sbjct: 957  ISCKWVYKVKTRTDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASK 1016

Query: 278  DWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
             W+LWQMD+ NAFL GEL++E YM+QPK FE++
Sbjct: 1017 SWELWQMDVKNAFLHGELDKEIYMEQPKGFESK 1045

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BLAST of CmoCh14G013780 vs. TrEMBL
Match: I1IFM2_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 98  EEILPQKTGGANQIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQLRHSEIIL 157
           EE++ ++    +Q +   S  +    S   S  +  + QP EP + E   Q+LR S    
Sbjct: 428 EEVIEEER---DQKLETPSEGERSSPSKTKSPWKTGIHQPEEP-QTEEHDQELRRSTRPR 487

Query: 158 KENLEYANAV---EDEVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 217
           K N  YANA    E    EP +YEEA++   WQKAMEEE  AL++NQTW+LV +P+D K 
Sbjct: 488 KPNPRYANAALADESLPIEPSSYEEAARGPKWQKAMEEEIKALKENQTWDLVPKPKDVKP 547

Query: 218 ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNK 277
           ISCKW Y++    DGSI RYKA+ +  GFSQEYGLDY+ET SPVAKI  V+V   L  +K
Sbjct: 548 ISCKWVYKVKTRTDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASK 607

Query: 278 DWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
            W+LWQMD+ NAFL GEL++E YM+QPK FE++
Sbjct: 608 SWELWQMDVKNAFLHGELDKEIYMEQPKGFESK 636

[Close]

BLAST of CmoCh14G013780 vs. TrEMBL
Match: I1IA27_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 104/213 (48.83%), Postives = 137/213 (64.32%), Query Frame = 1


Query: 98   EEILPQKTGGANQIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQLRHSEIIL 157
            EE++ ++    +Q +   S  +    S   S  +  + QP EP + E   Q+LR S    
Sbjct: 837  EEVIEEER---DQKLETPSEGERSSPSKTKSPWKTGIHQPEEP-QTEEHDQELRRSTRPR 896

Query: 158  KENLEYANAV---EDEVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 217
            K N  YANA    E    EP +YEEA++   WQKAMEEE  AL++NQTW+LV +P+D K 
Sbjct: 897  KPNPRYANAALADESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKDVKP 956

Query: 218  ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNK 277
            ISCKW Y++    DGSI RYKA+ +  GFSQEYGLDY+ET SPVAKI  V+V   L  +K
Sbjct: 957  ISCKWVYKVKTRTDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASK 1016

Query: 278  DWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
             W+LWQMD+ NAFL GEL++E YM+QPK FE++
Sbjct: 1017 SWELWQMDVKNAFLHGELDKEIYMEQPKGFESK 1045

[Close]

BLAST of CmoCh14G013780 vs. TrEMBL
Match: I1HD26_BRADI (Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.9e-43
Identity = 104/213 (48.83%), Postives = 138/213 (64.79%), Query Frame = 1


Query: 98   EEILPQKTGGANQIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQLRHSEIIL 157
            EE++ ++    +Q + I S  +    S   S  +  + QP EP + E   Q+LR S    
Sbjct: 853  EEVIEEER---DQKLEIPSEGERSSPSKTKSPWKTGIHQPEEP-QTEEHDQELRRSTRPR 912

Query: 158  KENLEYANAV---EDEVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 217
            K N  YANA    E    EP +YEEA++   WQKAMEEE  AL++NQTW+LV +P++ K 
Sbjct: 913  KPNPRYANAALADESLPIEPSSYEEAARGPEWQKAMEEEIKALKENQTWDLVPKPKNVKP 972

Query: 218  ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNK 277
            ISCKW Y++    DGSI RYKA+ +  GFSQEYGLDY+ET SPVAKI  V+V   L  +K
Sbjct: 973  ISCKWVYKVKTRTDGSIERYKARLVARGFSQEYGLDYEETFSPVAKITTVRVLLALAASK 1032

Query: 278  DWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
             W+LWQMD+ NAFL GEL++E YM+QPK FE++
Sbjct: 1033 SWELWQMDVKNAFLHGELDKEIYMEQPKGFESK 1061

[Close]

BLAST of CmoCh14G013780 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 112.5 bits (280), Expect = 6.1e-25
Identity = 55/140 (39.29%), Postives = 85/140 (60.71%), Query Frame = 1


Query: 170 EVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDG 229
           +  EP TY EA +   W  AM++E  A+E   TWE+ + P + K I CKW Y+I    DG
Sbjct: 82  KAKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDG 141

Query: 230 SIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQ 289
           +I RYKA+ +  G++Q+ G+D+ ET SPV K+  V++   ++   ++ L Q+D++NAFL 
Sbjct: 142 TIERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLN 201

Query: 290 GELNREFYMDQPKKFENEVG 310
           G+L+ E YM  P  +    G
Sbjct: 202 GDLDEEIYMKLPPGYAARQG 221

[Close]

BLAST of CmoCh14G013780 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 69.7 bits (169), Expect = 4.6e-12
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1


Query: 156 ILKENLEYANAVEDEVN-EPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKL 215
           I K N +Y+  +   +  EP++   A ++  W +AM+EE  AL +N+TW LV  P +  +
Sbjct: 9   INKLNPKYSLTITTTIKKEPKSVIFALKDPGWCQAMQEELDALSRNKTWILVPPPVNQNI 68

Query: 216 ISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQ 266
           + CKW ++     DG++ R KA+ +  GF QE G+ + ET SPV +   ++
Sbjct: 69  LGCKWVFKTKLHSDGTLDRLKARLVAKGFHQEEGIYFVETYSPVVRTATIR 119

[Close]

BLAST of CmoCh14G013780 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 52.0 bits (123), Expect = 9.8e-07
Identity = 37/104 (35.58%), Postives = 44/104 (42.31%), Query Frame = 1


Query: 308 VGVIDQYMQNLKKPYLDAARPTLRYVKG--------------------DHD------TRR 367
           V ++ Q M        D  +  LRYVKG                    D D      TRR
Sbjct: 121 VNIVCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYIHKNSKLNVQAFCDSDWAGCTSTRR 180

Query: 368 SITGYVFKLGSRTIFWCNKRQPTISLSTKEVEYRAVAGATQENT 386
           S TG+   LG   I W  KRQPT+S S+ E EYRA+A    E T
Sbjct: 181 STTGFCTFLGCNIISWSAKRQPTVSRSSTETEYRALALTAAELT 224

[Close]

BLAST of CmoCh14G013780 vs. NCBI nr
Match: gi|147798853|emb|CAN61340.1| (hypothetical protein VITISV_007301 [Vitis vinifera])

HSP 1 Score: 183.0 bits (463), Expect = 1.0e-42
Identity = 100/176 (56.82%), Postives = 121/176 (68.75%), Query Frame = 1


Query: 135 TQPSEPSENEMTPQQLRHSEIILKENLEYANA--VED-EVNEPETYEEASQNSAWQKAME 194
           ++  EPSE E  P  LR S    K N +YAN   VED    EPET+ EA QN  W KA++
Sbjct: 434 SEEGEPSETE-APIPLRRSARTKKPNPKYANVAIVEDANAKEPETFAEAFQNPDWTKAIK 493

Query: 195 EETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGLDY 254
           EE  AL+QNQTWELV +PRD + ISCKW Y+I    DGSI R+KA+ +  GFSQ+YGLDY
Sbjct: 494 EEIAALKQNQTWELVPKPRDVEPISCKWVYKIKRRTDGSIERHKARLVARGFSQQYGLDY 553

Query: 255 DETISPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
           DET SPVAK+  V+V   L  NKDW LWQMD+ NAFL GEL+RE YM+QP  F ++
Sbjct: 554 DETFSPVAKLTTVRVLLALAANKDWDLWQMDVKNAFLHGELDREIYMNQPXGFXSQ 608

[Close]

BLAST of CmoCh14G013780 vs. NCBI nr
Match: gi|147817226|emb|CAN75363.1| (hypothetical protein VITISV_026292 [Vitis vinifera])

HSP 1 Score: 173.7 bits (439), Expect = 6.3e-40
Identity = 97/178 (54.49%), Postives = 120/178 (67.42%), Query Frame = 1


Query: 133 EVTQPSEPSENEMTPQQLRHSEIILKENLEYANA--VED-EVNEPETYEEASQNSAWQKA 192
           + ++  EPSE E  P  LR S    K N +YAN   VED    EPET+ EA QN  W KA
Sbjct: 687 QXSEEGEPSETE-APIPLRRSARTKKPNPKYANVAIVEDANAKEPETFAEAFQNPDWSKA 746

Query: 193 MEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYGL 252
           M+EE  AL++NQTWELV + RD + ISCKW Y+I    DG I R+KA+ +  GFSQ+YGL
Sbjct: 747 MKEEIAALKRNQTWELVPKXRDVEPISCKWVYKIKRRTDGLIERHKARLVARGFSQQYGL 806

Query: 253 DYDETISPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQGELNREFYMDQPKKFENE 308
           DYDET SPVAK+  V+V   L  NKDW L QMD+ NAFL GEL+RE YM+QP  F+++
Sbjct: 807 DYDETFSPVAKLTTVRVLLALAANKDWDLRQMDVKNAFLHGELDREIYMNQPMGFQSQ 863

[Close]

BLAST of CmoCh14G013780 vs. NCBI nr
Match: gi|147794801|emb|CAN71427.1| (hypothetical protein VITISV_027864 [Vitis vinifera])

HSP 1 Score: 169.1 bits (427), Expect = 1.6e-38
Identity = 97/201 (48.26%), Postives = 122/201 (60.70%), Query Frame = 1


Query: 110 QIVHICSSADMPEDSNDTSVGEQEVTQPSEPSENEMTPQQLRHSEIILKENLEYANA--V 169
           Q   I  S    E++ D  +G+     P +   +    +     E   K N +YAN   V
Sbjct: 723 QSARIQLSLGEAENAXDGDIGDDXTQSPWQTGVHGQPSE-----ERTKKPNPKYANVAIV 782

Query: 170 ED-EVNEPETYEEASQNSAWQKAMEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCT 229
           ED    EP T+ EA QNS W KAM EE  AL++NQTWELV +PRD +  SCKW Y+I   
Sbjct: 783 EDANAKEPXTFAEAFQNSDWSKAMXEEIAALKRNQTWELVPKPRDVEPXSCKWVYKIKRR 842

Query: 230 PDGSIVRYKAQTIDSGFSQEYGLDYDETISPVAKIIIVQVPPVLTVNKDWKLWQMDMNNA 289
            DGSI R+KA  +  GFSQ+YGLDYDET SPV K+  V+V   L  NKDW LWQMD+ NA
Sbjct: 843 TDGSIERHKAXLVARGFSQQYGLDYDETFSPVXKLTTVRVLLALAANKDWDLWQMDVKNA 902

Query: 290 FLQGELNREFYMDQPKKFENE 308
           FL GEL+RE YM+QP  F+++
Sbjct: 903 FLHGELDREIYMNQPMGFQSQ 918

[Close]

BLAST of CmoCh14G013780 vs. NCBI nr
Match: gi|657948006|ref|XP_008392761.1| (PREDICTED: uncharacterized protein LOC103454946 [Malus domestica])

HSP 1 Score: 162.9 bits (411), Expect = 1.1e-36
Identity = 79/132 (59.85%), Postives = 98/132 (74.24%), Query Frame = 1


Query: 189 AMEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQEYG 248
           AM+EE  ALEQNQTW+LV +PRD K ISCKW Y+I   PDGSI RYKA+ +  GFSQ+YG
Sbjct: 3   AMKEELDALEQNQTWDLVPKPRDVKPISCKWVYKIKRRPDGSIERYKARLVARGFSQQYG 62

Query: 249 LDYDETISPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQGELNREFYMDQPKKFENEV 308
           LDYDET SPVAK+  V+V   +  NKDW +WQMD+ NAFL GEL+RE YM QP  F++E 
Sbjct: 63  LDYDETFSPVAKLTTVRVLLAVAANKDWNMWQMDVKNAFLHGELDREIYMMQPMGFKSEA 122

Query: 309 GVIDQYMQNLKK 321
            +  +Y+  L+K
Sbjct: 123 HL--EYVCKLRK 132

[Close]

BLAST of CmoCh14G013780 vs. NCBI nr
Match: gi|702502817|ref|XP_010038876.1| (PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104427482 [Eucalyptus grandis])

HSP 1 Score: 157.5 bits (397), Expect = 4.7e-35
Identity = 88/233 (37.77%), Postives = 125/233 (53.65%), Query Frame = 1


Query: 187  QKAMEEETIALEQNQTWELVSRPRDTKLISCKWAYEIMCTPDGSIVRYKAQTIDSGFSQE 246
            +KAM+ E  AL     W L+  P    ++ C+W Y I   PDGSI R KA+ +  GF+Q 
Sbjct: 1294 KKAMDVEMEALVSRPMWSLIDLPLGKDVVKCRWVYTIKYNPDGSIERLKARLVAKGFTQT 1353

Query: 247  YGLDYDETISPVAKIIIVQVPPVLTVNKDWKLWQMDMNNAFLQGELNREFYMDQPKKFEN 306
            YG+DY ET SPVA++  V+V   LTVN DW L+Q+D+ NAFL G+L+ E YM+QP  +  
Sbjct: 1354 YGVDYFETFSPVARLNFVRVIISLTVNFDWLLYQLDVKNAFLYGDLSEEVYMEQPPGYVA 1413

Query: 307  EVGVIDQYMQNLKKPYLDAARPTLRYVK--------------------------GDHDTR 366
            +     ++M++ KK + DA    LRY+K                          G    R
Sbjct: 1414 QGENRSKFMESPKKAHWDAVCRILRYLKSSPGKGLIYKSNGSSTLVGYSDADWAGSTYDR 1473

Query: 367  RSITGYVFKLGSRTIFWCNKRQPTISLSTKEVEYRAVAGATQENTCFKLLMED 394
            RS TGY   +G   + W +K+Q TI+ S+ E EYRA+A    E    K L+++
Sbjct: 1474 RSTTGYCTFIGGNLVTWRSKKQTTIARSSAEAEYRAMAHTVAELLWLKSLLQE 1526

The following BLAST results are available for this feature:

BLAST of CmoCh14G013780 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	1.6e-19	27.21	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	9.9e-17	31.52	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
M820_ARATH	8.1e-11	34.23	Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0...	[more]

BLAST of CmoCh14G013780 vs. TrEMBL


Match Name	E-value	Identity	Description
I1J3P8_BRADI	1.9e-43	48.83	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1J0P4_BRADI	1.9e-43	48.83	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1IFM2_BRADI	1.9e-43	48.83	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1IA27_BRADI	1.9e-43	48.83	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]
I1HD26_BRADI	1.9e-43	48.83	Uncharacterized protein OS=Brachypodium distachyon PE=4 SV=1	[more]

BLAST of CmoCh14G013780 vs. TAIR10


Match Name	E-value	Identity	Description
AT4G23160.1	6.1e-25	39.29	cysteine-rich RLK (RECEPTOR-like protein kinase) 8	[more]
ATMG00820.1	4.6e-12	34.23	ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)	[more]
ATMG00810.1	9.8e-07	35.58	ATMG00810.1 DNA/RNA polymerases superfamily protein	[more]

BLAST of CmoCh14G013780 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|147798853\|emb\|CAN61340.1\|	1.0e-42	56.82	hypothetical protein VITISV_007301 [Vitis vinifera]	[more]
gi\|147817226\|emb\|CAN75363.1\|	6.3e-40	54.49	hypothetical protein VITISV_026292 [Vitis vinifera]	[more]
gi\|147794801\|emb\|CAN71427.1\|	1.6e-38	48.26	hypothetical protein VITISV_027864 [Vitis vinifera]	[more]
gi\|657948006\|ref\|XP_008392761.1\|	1.1e-36	59.85	PREDICTED: uncharacterized protein LOC103454946 [Malus domestica]	[more]
gi\|702502817\|ref\|XP_010038876.1\|	4.7e-35	37.77	PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104427482 [Eucalyptus...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR013103	RVT_2

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0044237	cellular metabolic process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003824	catalytic activity
molecular_function	GO:1901363	heterocyclic compound binding
molecular_function	GO:0043167	ion binding
molecular_function	GO:0097159	organic cyclic compound binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G013780.1	CmoCh14G013780.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR013103	Reverse transcriptase, RNA-dependent DNA polymerase	PFAM	PF07727	RVT_2	coord: 200..307 score: 1.0
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 44..54 score: 1.3E-71coord: 169..395 score: 1.3
None	No IPR available	PANTHER	PTHR11439:SF164	SUBFAMILY NOT NAMED	coord: 44..54 score: 1.3E-71coord: 169..395 score: 1.3

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G013780	Cucurbita pepo (Zucchini)	cmocpeB244
CmoCh14G013780	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G013780	Bottle gourd (USVL1VR-Ls)	cmolsiB225
CmoCh14G013780	Bottle gourd (USVL1VR-Ls)	cmolsiB244
CmoCh14G013780	Silver-seed gourd	carcmoB0163
CmoCh14G013780	Cucumber (Gy14) v2	cgybcmoB455
CmoCh14G013780	Cucumber (Gy14) v2	cgybcmoB897
CmoCh14G013780	Melon (DHL92) v3.6.1	cmomedB232
CmoCh14G013780	Melon (DHL92) v3.6.1	cmomedB264
CmoCh14G013780	Silver-seed gourd	carcmoB0283
CmoCh14G013780	Cucumber (Chinese Long) v3	cmocucB0291
CmoCh14G013780	Cucumber (Chinese Long) v3	cmocucB0317
CmoCh14G013780	Watermelon (97103) v2	cmowmbB255
CmoCh14G013780	Watermelon (97103) v2	cmowmbB261
CmoCh14G013780	Wax gourd	cmowgoB0306
CmoCh14G013780	Wax gourd	cmowgoB0327
CmoCh14G013780	Cucurbita moschata (Rifu)	cmocmoB202
CmoCh14G013780	Cucurbita moschata (Rifu)	cmocmoB234
CmoCh14G013780	Wild cucumber (PI 183967)	cmocpiB250
CmoCh14G013780	Cucumber (Gy14) v1	cgycmoB0186
CmoCh14G013780	Cucumber (Gy14) v1	cgycmoB0235
CmoCh14G013780	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G013780	Cucurbita maxima (Rimu)	cmacmoB461
CmoCh14G013780	Wild cucumber (PI 183967)	cmocpiB268
CmoCh14G013780	Cucumber (Chinese Long) v2	cmocuB245
CmoCh14G013780	Melon (DHL92) v3.5.1	cmomeB205
CmoCh14G013780	Melon (DHL92) v3.5.1	cmomeB232
CmoCh14G013780	Watermelon (Charleston Gray)	cmowcgB201
CmoCh14G013780	Watermelon (Charleston Gray)	cmowcgB230
CmoCh14G013780	Watermelon (97103) v1	cmowmB218