CmoCh14G013370 (gene) Cucurbita moschata (Rifu)

NameCmoCh14G013370
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPeroxisome biogenesis protein 2
LocationCmo_Chr14 : 11141110 .. 11142977 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTGGACCGTGTTTGGTTGGGCAGAGGATCCAATTTGTGTTGCCCAAAGGAAAAAAGGGCACACAGACCCAAACGGAGCTGATTGATGAGGTAGCGGTTGCTCCGCGTTTGGCGTCGCTCTTCGTCAATCACTTTTCTTCTTCTTCTTCTACAGTTCCTCTCCCGCCATTACCAGCACGACGGAGCTCCTTCTTCTTCACCGCTTCTCTCTGCAACCCTGATATTTGTCATGGTCTTAGAAGCCCTAGCAGCAGCCTCCTCCACTGCTTCGCCCCCTTCCACCAGCAACTTCAATCTTCCACCACCTCCTGAAGATGCGTGGAGTCGTGCTTATCAGCGACTACATCCTCGCTGGAAATCTCTTTCCCACTCTCACCTGGTACCTTCATATCCCTCTCTTTCTCTCTCTCTCTCTCTCGCCCTAAACCTTCTTCACGAATGTCTGTTTTATTTGTTCATAGCTGCCTCGACTCTACGGTGTATGTCTCGTATTCATTTGTTTATTTGTATATATTTGAGTTCGTTTGTAATAAATAGCTTTACCGATGATCATCTATGCGATATGGTTGGAAATGTTCCATTCGTGTAAATTGAGCTTCTGGCTTATTGTTTGTTTCGTTAATCAAGTCATGTGAAAGTCAGATTTTCTTGTACGTGCACCTTTAGCTGCATTTGTTTTAATTTGTTATTGGTTGGTATATCCGTAGTAATTTATGATTCTCTCTATGTTTTTTTCCTGTCGATTCTGTAGTCGGCCATTCCAATTTCGATATCGAAAGTTAATCAAGTGGATGCGGCACGGCTAGATATTGAAATGTCGGCCATGTTGAAAGAACAGCTGGTTAAGGTCTTTGCTTTGATGAAGGTATCTGTTGCTCCTTATTCTGACTTCGAAATGTAAATACTTGGCCAGTGAAGTTATCTAGGCGTCATTCAGTATTTTGTTCTACTTTGATGGATTAGCCAGGAATGTTGTTTCAATATGAAGCTGAGCTTGATGCTTTTTTGGAGTTCCTTATTTGGCGGTTTTCAATTTGGGTAGACAAGCCCACACCGGGAATTTCTCTCATGAATTTGCGGTACCGAGACGAACGTGCATTGGAGGTTCCAGGAAAAGGTAAGGTGGTCTAAACAGCTCCTGCTATGCTTCTTTTTTAACCGATTGTTATTGTCAGGATGATGTAGGAATGAAATCAGTTTTATTCAAACTTGACATTGTAAGATAATTATAAATTCATTATGAAGTTCTTAGAATTAAAATTCAAGCAGCCATGGAACTGCTATGATTAAATCTTCATAGCAATTAGCAATACGATTGTCAATTACTAGTTCCATTCATGAAAACATTATTAAATTTTTTGCTAAACTACTTGATTTACTCATGGCTCTGGACTTCTTCTGCAATACAGTTAGAACTGGATTGGAAGGACCTGGCCTCACAGTTGCTCAAAAGATTTGGTATTGCGTGGCCACTGTGGGCGGTCAATACATGTGGACTCGTTTACAATCATTTTCTGCCTTCCGTAGATGGGGAGATTCAGAGCAGGTACTGATTTTCAGAAAGTCACCACCCCTACCACGTGGACAACCTTCTAGTTTTGGATGTTTGTTGAGATTAACCCTGTATTTTGTTCAGAGGACACTGGCTAGACGAGCATGGCTTTTGATACAGCGCATAGAAGGAATATACAAAGCTGCTGCATTTGGCAACTTGCTCATATTTCTGTACACAGGAAGGTATGGTTTTCAGCATTCGATGTGTTTCCTTCTCAATAGACTCTTCCACTCCAACAGCTTGAAGGGATTATTTGTGCATAATTCATGCTAAAAAGGTGTTTTCAAAGGATTCCGTGCTCGTACTATCAATGA

mRNA sequence

TTGGACCGTGTTTGGTTGGGCAGAGGATCCAATTTGTGTTGCCCAAAGGAAAAAAGGGCACACAGACCCAAACGGAGCTGATTGATGAGGTAGCGGTTGCTCCGCGTTTGGCGTCGCTCTTCGTCAATCACTTTTCTTCTTCTTCTTCTACAGTTCCTCTCCCGCCATTACCAGCACGACGGAGCTCCTTCTTCTTCACCGCTTCTCTCTGCAACCCTGATATTTGTCATGGTCTTAGAAGCCCTAGCAGCAGCCTCCTCCACTGCTTCGCCCCCTTCCACCAGCAACTTCAATCTTCCACCACCTCCTGAAGATGCGTGGAGTCGTGCTTATCAGCGACTACATCCTCGCTGGAAATCTCTTTCCCACTCTCACCTGTCGGCCATTCCAATTTCGATATCGAAAGTTAATCAAGTGGATGCGGCACGGCTAGATATTGAAATGTCGGCCATGTTGAAAGAACAGCTGGTTAAGGTCTTTGCTTTGATGAAGAGGACACTGGCTAGACGAGCATGGCTTTTGATACAGCGCATAGAAGGAATATACAAAGCTGCTGCATTTGGCAACTTGCTCATATTTCTGTACACAGGAAGGTGTTTTCAAAGGATTCCGTGCTCGTACTATCAATGA

Coding sequence (CDS)

ATGGTCTTAGAAGCCCTAGCAGCAGCCTCCTCCACTGCTTCGCCCCCTTCCACCAGCAACTTCAATCTTCCACCACCTCCTGAAGATGCGTGGAGTCGTGCTTATCAGCGACTACATCCTCGCTGGAAATCTCTTTCCCACTCTCACCTGTCGGCCATTCCAATTTCGATATCGAAAGTTAATCAAGTGGATGCGGCACGGCTAGATATTGAAATGTCGGCCATGTTGAAAGAACAGCTGGTTAAGGTCTTTGCTTTGATGAAGAGGACACTGGCTAGACGAGCATGGCTTTTGATACAGCGCATAGAAGGAATATACAAAGCTGCTGCATTTGGCAACTTGCTCATATTTCTGTACACAGGAAGGTGTTTTCAAAGGATTCCGTGCTCGTACTATCAATGA
BLAST of CmoCh14G013370 vs. Swiss-Prot
Match: PEX2_ARATH (Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1)

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-15
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 1

Query: 26 PPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAMLKEQLVKVFA 85
          P +DAW R+YQRL P  +SL  S  S IP++IS+VNQ DAARLD+EMSAMLKEQLVKVF 
Sbjct: 6  PADDAWIRSYQRLLPESQSLLASRRSVIPVAISRVNQFDAARLDVEMSAMLKEQLVKVFT 65

Query: 86 LMK 89
          LMK
Sbjct: 66 LMK 68

BLAST of CmoCh14G013370 vs. TrEMBL
Match: A0A0A0LDC6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G471200 PE=4 SV=1)

HSP 1 Score: 149.4 bits (376), Expect = 3.0e-33
Identity = 83/91 (91.21%), Postives = 84/91 (92.31%), Query Frame = 1

Query: 1  MVLEALAAASST---ASPPSTSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISI 60
          MVLEALAAASST   ASPPSTSN NLPPPPEDAW+RA QRL PRWKSLSHSHLS IPISI
Sbjct: 1  MVLEALAAASSTSSSASPPSTSNSNLPPPPEDAWTRASQRLLPRWKSLSHSHLSPIPISI 60

Query: 61 SKVNQVDAARLDIEMSAMLKEQLVKVFALMK 89
          SKVNQVDAARLDIEMSAMLKEQLVKVFALMK
Sbjct: 61 SKVNQVDAARLDIEMSAMLKEQLVKVFALMK 91

BLAST of CmoCh14G013370 vs. TrEMBL
Match: A0A164URN6_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026336 PE=4 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 8.0e-18
Identity = 55/88 (62.50%), Postives = 64/88 (72.73%), Query Frame = 1

Query: 1  MVLEALAAASSTASPPSTSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKV 60
          MV E LA++S   S  S       PP ED WS  YQRL PRWK  + SH S+IP++IS+V
Sbjct: 1  MVRETLASSSGNLSAAS-------PPAEDEWSNTYQRLLPRWKQSTPSHQSSIPVTISRV 60

Query: 61 NQVDAARLDIEMSAMLKEQLVKVFALMK 89
          NQVDA RLDIEMSAMLKEQL+KVF+LMK
Sbjct: 61 NQVDAGRLDIEMSAMLKEQLLKVFSLMK 81

BLAST of CmoCh14G013370 vs. TrEMBL
Match: A0A059AJ29_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02953 PE=4 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 51/83 (61.45%), Postives = 63/83 (75.90%), Query Frame = 1

Query: 6  LAAASSTASPPSTSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDA 65
          ++ +SST + P       PPPPEDAW   Y+RL P+W+S +  H + IPISIS+VNQ DA
Sbjct: 1  MSGSSSTGNSPPPPPPAPPPPPEDAWVGTYRRLQPQWQSFNAYHEALIPISISRVNQFDA 60

Query: 66 ARLDIEMSAMLKEQLVKVFALMK 89
          ARLD+EMSAMLKEQLVKVF+LMK
Sbjct: 61 ARLDVEMSAMLKEQLVKVFSLMK 83

BLAST of CmoCh14G013370 vs. TrEMBL
Match: I3SMI5_LOTJA (Uncharacterized protein OS=Lotus japonicus PE=2 SV=1)

HSP 1 Score: 97.8 bits (242), Expect = 1.0e-17
Identity = 51/73 (69.86%), Postives = 60/73 (82.19%), Query Frame = 1

Query: 17 STSNFNLPP-PPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAM 76
          +T+   LPP PP+DAW+     L PRW+SLS SH S IP++IS+VNQVDAARLD+EMSAM
Sbjct: 4  TTTTTTLPPVPPQDAWTLTCHNLLPRWESLSLSHQSTIPVTISRVNQVDAARLDVEMSAM 63

Query: 77 LKEQLVKVFALMK 89
          LKEQLVKVFALMK
Sbjct: 64 LKEQLVKVFALMK 76

BLAST of CmoCh14G013370 vs. TrEMBL
Match: M5WUE0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008363mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-17
Identity = 50/67 (74.63%), Postives = 54/67 (80.60%), Query Frame = 1

Query: 22 NLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAMLKEQLV 81
          N  PP EDAW   YQ L P+W+SLSHS  S IPISIS+VNQ DA RLDIEMSAMLKEQLV
Sbjct: 6  NFRPPAEDAWVHTYQTLLPQWQSLSHSRQSIIPISISRVNQFDAGRLDIEMSAMLKEQLV 65

Query: 82 KVFALMK 89
          KVF+LMK
Sbjct: 66 KVFSLMK 72

BLAST of CmoCh14G013370 vs. TAIR10
Match: AT1G79810.1 (AT1G79810.1 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4-type RING finger) family protein)

HSP 1 Score: 84.3 bits (207), Expect = 6.0e-17
Identity = 44/63 (69.84%), Postives = 51/63 (80.95%), Query Frame = 1

Query: 26 PPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAMLKEQLVKVFA 85
          P +DAW R+YQRL P  +SL  S  S IP++IS+VNQ DAARLD+EMSAMLKEQLVKVF 
Sbjct: 6  PADDAWIRSYQRLLPESQSLLASRRSVIPVAISRVNQFDAARLDVEMSAMLKEQLVKVFT 65

Query: 86 LMK 89
          LMK
Sbjct: 66 LMK 68

BLAST of CmoCh14G013370 vs. NCBI nr
Match: gi|778681347|ref|XP_011651491.1| (PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Cucumis sativus])

HSP 1 Score: 149.4 bits (376), Expect = 4.3e-33
Identity = 83/91 (91.21%), Postives = 84/91 (92.31%), Query Frame = 1

Query: 1  MVLEALAAASST---ASPPSTSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISI 60
          MVLEALAAASST   ASPPSTSN NLPPPPEDAW+RA QRL PRWKSLSHSHLS IPISI
Sbjct: 1  MVLEALAAASSTSSSASPPSTSNSNLPPPPEDAWTRASQRLLPRWKSLSHSHLSPIPISI 60

Query: 61 SKVNQVDAARLDIEMSAMLKEQLVKVFALMK 89
          SKVNQVDAARLDIEMSAMLKEQLVKVFALMK
Sbjct: 61 SKVNQVDAARLDIEMSAMLKEQLVKVFALMK 91

BLAST of CmoCh14G013370 vs. NCBI nr
Match: gi|659093411|ref|XP_008447525.1| (PREDICTED: peroxisome biogenesis protein 2 [Cucumis melo])

HSP 1 Score: 143.7 bits (361), Expect = 2.4e-31
Identity = 80/91 (87.91%), Postives = 82/91 (90.11%), Query Frame = 1

Query: 1  MVLEALAAASS---TASPPSTSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISI 60
          MVLEALAAASS   + SPPSTSN NLPPPPEDAW+ A QRL PRWKSLSHSHLS IPISI
Sbjct: 1  MVLEALAAASSISSSTSPPSTSNSNLPPPPEDAWTLASQRLLPRWKSLSHSHLSPIPISI 60

Query: 61 SKVNQVDAARLDIEMSAMLKEQLVKVFALMK 89
          SKVNQVDAARLDIEMSAMLKEQLVKVFALMK
Sbjct: 61 SKVNQVDAARLDIEMSAMLKEQLVKVFALMK 91

BLAST of CmoCh14G013370 vs. NCBI nr
Match: gi|658014674|ref|XP_008342661.1| (PREDICTED: peroxisome biogenesis protein 2 [Malus domestica])

HSP 1 Score: 105.9 bits (263), Expect = 5.5e-20
Identity = 52/72 (72.22%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 17 STSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAML 76
          S+S+ N+ PP +DAW  AY+ LHP+W+S+SHSH S IPISIS+VNQ DA RLDIEMSAML
Sbjct: 3  SSSSSNVRPPAQDAWLHAYKSLHPQWQSISHSHQSIIPISISRVNQFDAGRLDIEMSAML 62

Query: 77 KEQLVKVFALMK 89
          KEQLVKVF+LMK
Sbjct: 63 KEQLVKVFSLMK 74

BLAST of CmoCh14G013370 vs. NCBI nr
Match: gi|694438208|ref|XP_009346093.1| (PREDICTED: peroxisome biogenesis protein 2-like [Pyrus x bretschneideri])

HSP 1 Score: 102.1 bits (253), Expect = 7.9e-19
Identity = 51/72 (70.83%), Postives = 62/72 (86.11%), Query Frame = 1

Query: 17 STSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAML 76
          S+S+ N+ PP +DAW +AY+ L P+W+S+SHSH S IPISIS+VNQ DA RLDIEMSAML
Sbjct: 3  SSSSSNVRPPAQDAWLQAYKSLLPQWQSISHSHQSIIPISISRVNQFDAGRLDIEMSAML 62

Query: 77 KEQLVKVFALMK 89
          KEQLVKVF+LMK
Sbjct: 63 KEQLVKVFSLMK 74

BLAST of CmoCh14G013370 vs. NCBI nr
Match: gi|694325257|ref|XP_009353581.1| (PREDICTED: peroxisome biogenesis protein 2-like isoform X1 [Pyrus x bretschneideri])

HSP 1 Score: 100.9 bits (250), Expect = 1.8e-18
Identity = 51/71 (71.83%), Postives = 58/71 (81.69%), Query Frame = 1

Query: 18 TSNFNLPPPPEDAWSRAYQRLHPRWKSLSHSHLSAIPISISKVNQVDAARLDIEMSAMLK 77
          +SN  + PP EDAW   Y+ L P+WKS+SHSH S IPISIS+VNQ DA RLDIEMSAMLK
Sbjct: 4  SSNSTVRPPAEDAWLHTYKSLLPQWKSISHSHQSIIPISISRVNQFDAGRLDIEMSAMLK 63

Query: 78 EQLVKVFALMK 89
          EQLVKVF+LMK
Sbjct: 64 EQLVKVFSLMK 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
PEX2_ARATH1.1e-1569.84Peroxisome biogenesis protein 2 OS=Arabidopsis thaliana GN=PEX2 PE=1 SV=1[more]
Match NameE-valueIdentityDescription
A0A0A0LDC6_CUCSA3.0e-3391.21Uncharacterized protein OS=Cucumis sativus GN=Csa_3G471200 PE=4 SV=1[more]
A0A164URN6_DAUCA8.0e-1862.50Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_026336 PE=4 SV=1[more]
A0A059AJ29_EUCGR1.0e-1761.45Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J02953 PE=4 SV=1[more]
I3SMI5_LOTJA1.0e-1769.86Uncharacterized protein OS=Lotus japonicus PE=2 SV=1[more]
M5WUE0_PRUPE1.8e-1774.63Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008363mg PE=4 SV=1[more]
Match NameE-valueIdentityDescription
AT1G79810.16.0e-1769.84 Pex2/Pex12 N-terminal domain-containing protein / zinc finger (C3HC4... [more]
Match NameE-valueIdentityDescription
gi|778681347|ref|XP_011651491.1|4.3e-3391.21PREDICTED: peroxisome biogenesis protein 2 isoform X1 [Cucumis sativus][more]
gi|659093411|ref|XP_008447525.1|2.4e-3187.91PREDICTED: peroxisome biogenesis protein 2 [Cucumis melo][more]
gi|658014674|ref|XP_008342661.1|5.5e-2072.22PREDICTED: peroxisome biogenesis protein 2 [Malus domestica][more]
gi|694438208|ref|XP_009346093.1|7.9e-1970.83PREDICTED: peroxisome biogenesis protein 2-like [Pyrus x bretschneideri][more]
gi|694325257|ref|XP_009353581.1|1.8e-1871.83PREDICTED: peroxisome biogenesis protein 2-like isoform X1 [Pyrus x bretschneide... [more]
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0044265 cellular macromolecule catabolic process
biological_process GO:0009640 photomorphogenesis
biological_process GO:0008150 biological_process
biological_process GO:0006888 ER to Golgi vesicle-mediated transport
biological_process GO:0016558 protein import into peroxisome matrix
biological_process GO:0006513 protein monoubiquitination
biological_process GO:0010351 lithium ion transport
biological_process GO:0006869 lipid transport
biological_process GO:0006891 intra-Golgi vesicle-mediated transport
biological_process GO:0006635 fatty acid beta-oxidation
cellular_component GO:0005829 cytosol
cellular_component GO:0005777 peroxisome
cellular_component GO:0009506 plasmodesma
cellular_component GO:0005575 cellular_component
molecular_function GO:0004842 ubiquitin-protein transferase activity
molecular_function GO:0008270 zinc ion binding
molecular_function GO:0046872 metal ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G013370.1CmoCh14G013370.1mRNA


The following gene(s) are paralogous to this gene:

None