CmoCh14G012290 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G012290
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	(Retrovirus-related Pol polyprotein from transposon TNT 1-94) (3.1.13.-)
Location	Cmo_Chr14 : 10439008 .. 10440722 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCACGGAGCAGTGGAAGCTCAAGGATCGTCAGGCTTTAGGGTTGATCCGGTTGACGCTGTCTAGAAACATGACGTTCAATATTATCAAGGAGAAGACAACGTCAGATTTATTGAAGGCGTTGTCGAATATGTACGAGAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGGACACTGTACAATCTACAAATGTCTGAAGGTGGATTTGTTGCTGGTCATATAAACGAATTCAATATGATTGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATAAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACGGTTGTTGCCGCAACCGGCAGTTCACGAGTATCTAATAAACTGAAGTTCGATGAAATTCAAGATGTAGTTCTCAGCGAAAGTATTCGCAAACGAGAAATCGGAGATCCATCAGGCAATGCTCTCAGTGTTGATCGAAGGGCAAGAAGTAAATCAAAGGGCCCAAACAATGGCGATCAAAATCAAGGAACCAAGGAAAATCTCCAAACAAACCAAATGTAAAGTGTTGGAGTTGTGGAGAAAAAGGTCACTTTCGGGCAGATTATACAAAGAGGAAACAAAATCACAAATCAGAGGATGACGATGATTTGTTACATTCAGCAGAAGACATAGGGGATGCTCTAATCCTCAGCGTGGATAGTCTGATTGAATCCTGGATTTTGGATTCAGGTGCATATTTTCGTTCGTCTCCAAATAAAGAGTTGTTTAGAAATTTCAAGTCTGGAATTTTTGATAAGGTGTATCTTGCCGATTGAAGGAAAAGGGATGTCTGCATAAAAACTCCGGCAAGAAATCAGTGGAAATTAAAGGATGTCAGATATATTTCTGGTCTCAAGAAGAACCTGATCTCTATTGGTCAGTTGGATAGCACAGGTTATGCAACAAAGTTTGGGAAGAGTTCGTGGAAGATTGTGAAGAGTGCTATGTGGTAGCACGTGACACAAAATCTGGAACCTTGTACACCACTGCAGGGTGTATGAACATGGCTGCTGTTGTTGAGAGTGCTTCCAATTCAAGGCTATGATACAATAGACTTGGACATAGGAGCGTTAAAGGAATGAAGATGCTGGCTGCGGAAGGAATTTTGGAAAGTCTGAACTCTGTTGATATGAGTCCTTGTGTGAACTGCGTTATGAGTAAACAGAAATGACTTAGCTTGACTGCCAAAGAATTGAAGAAAGGTTCCGGGACAACGAAGCAAGTGGAAGTTGAGGTTGAGTTGCTGAAAGATTCAACTAGTGATGTAGCAGATACTCAAGAAACTCTTGAGACTGTTGTTGAGGAACTAGAGGTGAAGCGAGTGGGAGTTGTGGTTGAGTTGTTGAAAGATTCACCTAATGATGTTGTAGCAGATACTCAAAAAAACTCCTGAGACTATTGCTGAGGAACTAGAAGTGGAGCAAGTGACACTTGAGAAGGTGTTGAAAAGATTATCCAGAACTATCAGAGTACCAGATAGGTATGTACCTTCTTTACACTATCAGTTGGTGACTGCTGAAGGGGAACGAAAGCCCCTTGATGAGGCCCTACAGTTGGAGGATACAACCAAGTGGGAGCAAGCCATGGATGATGGGATGTCTAGGCTTCAGAAATGCGTTGCTCTTTCACCTGGTGAGGCTAAGTACATGGCAGTAGCTGAAGCTGGAAAGGAGATGATATGA

mRNA sequence

ATGACCACGGAGCAGTGGAAGCTCAAGGATCGTCAGGCTTTAGGGTTGATCCGGTTGACGCTGTCTAGAAACATGACGTTCAATATTATCAAGGAGAAGACAACGTCAGATTTATTGAAGGCGTTGTCGAATATGTACGAGAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGGACACTGTACAATCTACAAATGTCTGAAGGTGGATTTGTTGCTGGTCATATAAACGAATTCAATATGATTGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATAAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACGGTTGTTGCCGCAACCGGCAGTTCACGAGTATCTAATAAACTGAAGTTCGATGAAATTCAAGATGTAGTTCTCAGCGAAAGTATTCGCAAACGAGAAATCGGAGATCCATCAGGCAATGCTCTCAGTGTTGATCGAAGGGCAAGAAGTGCATATTTTCGTTCGTCTCCAAATAAAGAGTTGTTTAGAAATTTCAAGTCTGGAATTTTTGATAAGTTGGATAGCACAGGTTATGCAACAAAGTTTGGGAAGAGTTCGTGGAAGATTGTGAAGAGTGCTATGTGCTTGACTGCCAAAGAATTGAAGAAAGGTTCCGGGACAACGAAGCAAGTGGAAGTTGAGGTTGAGTTGCTGAAAGATTCAACTAGTGATGTAGCAGATACTCAAGAAACTCTTGAGACTGTTGTTGAGGAACTAGAGATACTCAAAAAAACTCCTGAGACTATTGCTGAGGAACTAGAAGTGGAGCAAGTGACACTTGAGAAGGTGTTGAAAAGATTATCCAGAACTATCAGAGTACCAGATAGGTATGTACCTTCTTTACACTATCAGTTGGTGACTGCTGAAGGGGAACGAAAGCCCCTTGATGAGGCCCTACAGTTGGAGGATACAACCAAGTGGGAGCAAGCCATGGATGATGGGATGTCTAGGCTTCAGAAATGCGTTGCTCTTTCACCTGGTGAGGCTAAGTACATGGCAGTAGCTGAAGCTGGAAAGGAGATGATATGA

Coding sequence (CDS)

ATGACCACGGAGCAGTGGAAGCTCAAGGATCGTCAGGCTTTAGGGTTGATCCGGTTGACGCTGTCTAGAAACATGACGTTCAATATTATCAAGGAGAAGACAACGTCAGATTTATTGAAGGCGTTGTCGAATATGTACGAGAAACCGTCGGCTATGAACAAGGTGTATTTGATGCGGACACTGTACAATCTACAAATGTCTGAAGGTGGATTTGTTGCTGGTCATATAAACGAATTCAATATGATTGTAAGTCAACTGAGTTCGGTGGAAATTAATTTCGAGGATAAAATTAAAGCATTGATTTTGATGTCATCTTTACCCGAGTCGTGGGATACGGTTGTTGCCGCAACCGGCAGTTCACGAGTATCTAATAAACTGAAGTTCGATGAAATTCAAGATGTAGTTCTCAGCGAAAGTATTCGCAAACGAGAAATCGGAGATCCATCAGGCAATGCTCTCAGTGTTGATCGAAGGGCAAGAAGTGCATATTTTCGTTCGTCTCCAAATAAAGAGTTGTTTAGAAATTTCAAGTCTGGAATTTTTGATAAGTTGGATAGCACAGGTTATGCAACAAAGTTTGGGAAGAGTTCGTGGAAGATTGTGAAGAGTGCTATGTGCTTGACTGCCAAAGAATTGAAGAAAGGTTCCGGGACAACGAAGCAAGTGGAAGTTGAGGTTGAGTTGCTGAAAGATTCAACTAGTGATGTAGCAGATACTCAAGAAACTCTTGAGACTGTTGTTGAGGAACTAGAGATACTCAAAAAAACTCCTGAGACTATTGCTGAGGAACTAGAAGTGGAGCAAGTGACACTTGAGAAGGTGTTGAAAAGATTATCCAGAACTATCAGAGTACCAGATAGGTATGTACCTTCTTTACACTATCAGTTGGTGACTGCTGAAGGGGAACGAAAGCCCCTTGATGAGGCCCTACAGTTGGAGGATACAACCAAGTGGGAGCAAGCCATGGATGATGGGATGTCTAGGCTTCAGAAATGCGTTGCTCTTTCACCTGGTGAGGCTAAGTACATGGCAGTAGCTGAAGCTGGAAAGGAGATGATATGA

Homology

[Close]

BLAST of CmoCh14G012290 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 2.1e-18
Identity = 61/169 (36.09%), Postives = 96/169 (56.80%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  E W   D +A   IRL LS ++  NII E T   +   L ++Y   +  NK+YL + 
Sbjct: 47  MKAEDWADLDERAASAIRLHLSDDVVNNIIDEDTARGIWTRLESLYMSKTLTNKLYLKKQ 106

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           LY L MSEG     H+N FN +++QL+++ +  E++ KA++L++SLP S+D +       
Sbjct: 107 LYALHMSEGTNFLSHLNVFNGLITQLANLGVKIEEEDKAILLLNSLPSSYDNLATTILHG 166

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPSGNALSVDRRARSAYFRSSPN 170
           + + +LK D    ++L+E +RK+   +  G AL  + R RS Y RSS N
Sbjct: 167 KTTIELK-DVTSALLLNEKMRKKP--ENQGQALITEGRGRS-YQRSSNN 211

[Close]

BLAST of CmoCh14G012290 vs. TrEMBL
Match: K4BR07_SOLLC (Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 9.0e-61
Identity = 126/161 (78.26%), Postives = 138/161 (85.71%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           MT E+WKLKDRQ LGLIRLTL RN+ FNI+KEKTTSDLLK LSNMYEKPS MNKVYLM  
Sbjct: 1   MTEEKWKLKDRQTLGLIRLTLLRNVAFNIVKEKTTSDLLKTLSNMYEKPSVMNKVYLMHR 60

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
            +NLQM E G V+ H+NEFN+IVSQL+SV+IN ED+IKALILMSSLPESWDTVVA   SS
Sbjct: 61  FFNLQMPENGSVSDHVNEFNIIVSQLNSVDINSEDEIKALILMSSLPESWDTVVATISSS 120

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPSGNALSVDRRARS 162
             S  LKFDEI+DVVLSESIRKRE+GD SGNALSVDRR RS
Sbjct: 121 HGSENLKFDEIRDVVLSESIRKREVGDSSGNALSVDRRGRS 161

[Close]

BLAST of CmoCh14G012290 vs. TrEMBL
Match: A0A151S0E5_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_030069 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.7e-44
Identity = 103/197 (52.28%), Postives = 134/197 (68.02%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W L DRQALG+IRLTLSRN+ FNI KEKTT  L+ ALS+MYE PSA NKV+LMR 
Sbjct: 24  MKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTMGLMTALSSMYENPSASNKVHLMRR 83

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NLQM+EG  VA H+NE +++ +QLSSV I F+D+++ALIL+SSLPESW+  V A  SS
Sbjct: 84  LFNLQMTEGASVAQHLNELSIVTTQLSSVGIEFDDEVRALILLSSLPESWNATVTAVSSS 143

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPS------------------GNALSVDRRARSA 180
             SNKLK D+++D+VLSE IR+RE G+ S                  G   S D R++S 
Sbjct: 144 SGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSR 203

[Close]

BLAST of CmoCh14G012290 vs. TrEMBL
Match: A0A151RJX3_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_035688 PE=4 SV=1)

HSP 1 Score: 186.0 bits (471), Expect = 7.7e-44
Identity = 104/197 (52.79%), Postives = 134/197 (68.02%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W L DRQALG+IRLTLSRN+ FNI KEKTT  L+ ALS+MYEKPSA NKV+LMR 
Sbjct: 24  MKDDEWFLLDRQALGVIRLTLSRNVAFNIAKEKTTVGLMTALSSMYEKPSASNKVHLMRR 83

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NL+M+EG  VA H+NE N++ +QLSSV I F+D+++ALIL+SSLPESW+  V A  SS
Sbjct: 84  LFNLRMTEGASVAQHLNELNIVTTQLSSVGIEFDDEVRALILLSSLPESWNATVTAVSSS 143

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPS------------------GNALSVDRRARSA 180
             SNKLK D ++D+VLSE IR+RE G+ S                  G   S D R++S 
Sbjct: 144 SRSNKLKSDVVRDLVLSEEIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSR 203

[Close]

BLAST of CmoCh14G012290 vs. TrEMBL
Match: A0A151SEB7_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_024959 PE=4 SV=1)

HSP 1 Score: 185.3 bits (469), Expect = 1.3e-43
Identity = 103/197 (52.28%), Postives = 134/197 (68.02%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W L DRQALG+IRLTLSRN+ FNI KEKTT  L+ ALS+MYEKPSA NKV+LMR 
Sbjct: 24  MKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTVGLMTALSSMYEKPSASNKVHLMRR 83

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NL+M+EG  VA H+NE + + +QLSSV I F+D+++ALIL+SSLPESW+  V A  SS
Sbjct: 84  LFNLRMAEGASVAQHLNELSTVTTQLSSVGIEFDDEVRALILLSSLPESWNATVTAVSSS 143

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPS------------------GNALSVDRRARSA 180
             SNKLK D+++D+VLSE IR+RE G+ S                  G   S D R++S 
Sbjct: 144 SGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSR 203

[Close]

BLAST of CmoCh14G012290 vs. TrEMBL
Match: A0A151UAT2_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=KK1_020679 PE=4 SV=1)

HSP 1 Score: 184.9 bits (468), Expect = 1.7e-43
Identity = 95/163 (58.28%), Postives = 125/163 (76.69%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W   DR+ALG IRLTLSRN+ FNI KEKTT+ L+ ALS+MYEKPSA NKV+L+R 
Sbjct: 1   MKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTASLMAALSSMYEKPSAANKVHLIRR 60

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NL+M+EG   A HINE N I  QLSSV INF+++++ALIL+SSLPESW+  V A  SS
Sbjct: 61  LFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEVRALILLSSLPESWNATVTAVSSS 120

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGD-PSGNALSVDRRARSA 163
             SNKLKFD+++D+VLSE +R+RE G+  + + L  + R RS+
Sbjct: 121 SGSNKLKFDDVRDLVLSEEVRRRETGESTTSSVLHTESRGRSS 163

[Close]

BLAST of CmoCh14G012290 vs. TAIR10
Match: AT3G29785.1 (AT3G29785.1 unknown protein)

HSP 1 Score: 54.7 bits (130), Expect = 1.4e-07
Identity = 25/55 (45.45%), Postives = 38/55 (69.09%), Query Frame = 1


Query: 1  MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKV 56
          M+ + W +  RQ L +IRLT+S+N+  N+ KEK+   L+K LS++Y+KPS  N V
Sbjct: 41 MSQDDWNILYRQVLDVIRLTISKNIAHNVAKEKSPDGLMKVLSDIYKKPSTNNTV 95

[Close]

BLAST of CmoCh14G012290 vs. NCBI nr
Match: gi|1012336997|gb|KYP48283.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 103/197 (52.28%), Postives = 134/197 (68.02%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W L DRQALG+IRLTLSRN+ FNI KEKTT  L+ ALS+MYE PSA NKV+LMR 
Sbjct: 24  MKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTMGLMTALSSMYENPSASNKVHLMRR 83

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NLQM+EG  VA H+NE +++ +QLSSV I F+D+++ALIL+SSLPESW+  V A  SS
Sbjct: 84  LFNLQMTEGASVAQHLNELSIVTTQLSSVGIEFDDEVRALILLSSLPESWNATVTAVSSS 143

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPS------------------GNALSVDRRARSA 180
             SNKLK D+++D+VLSE IR+RE G+ S                  G   S D R++S 
Sbjct: 144 SGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSR 203

[Close]

BLAST of CmoCh14G012290 vs. NCBI nr
Match: gi|1012331397|gb|KYP42874.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 186.0 bits (471), Expect = 1.1e-43
Identity = 104/197 (52.79%), Postives = 134/197 (68.02%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W L DRQALG+IRLTLSRN+ FNI KEKTT  L+ ALS+MYEKPSA NKV+LMR 
Sbjct: 24  MKDDEWFLLDRQALGVIRLTLSRNVAFNIAKEKTTVGLMTALSSMYEKPSASNKVHLMRR 83

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NL+M+EG  VA H+NE N++ +QLSSV I F+D+++ALIL+SSLPESW+  V A  SS
Sbjct: 84  LFNLRMTEGASVAQHLNELNIVTTQLSSVGIEFDDEVRALILLSSLPESWNATVTAVSSS 143

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPS------------------GNALSVDRRARSA 180
             SNKLK D ++D+VLSE IR+RE G+ S                  G   S D R++S 
Sbjct: 144 SRSNKLKSDVVRDLVLSEEIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSR 203

[Close]

BLAST of CmoCh14G012290 vs. NCBI nr
Match: gi|672202993|ref|XP_008778529.1| (PREDICTED: uncharacterized protein LOC103698312 [Phoenix dactylifera])

HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43
Identity = 110/212 (51.89%), Postives = 138/212 (65.09%), Query Frame = 1


Query: 6   WKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRTLYNLQ 65
           W L DRQALG + LTL+RN+ FN+++E TT+ LLKALSNMYEKP A NKVYLMR L+NL+
Sbjct: 277 WDLLDRQALGGVCLTLARNVVFNVLEEMTTAGLLKALSNMYEKPLASNKVYLMRRLFNLK 336

Query: 66  MSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSSRVSNK 125
           MSEG  V  HINEFN+I SQLSSVEINFED++ ALIL+S LPESW   V A  SS  SNK
Sbjct: 337 MSEGFSVRDHINEFNLITSQLSSVEINFEDEVHALILLSFLPESWGATVTAVSSSCSSNK 396

Query: 126 LKFDEIQDVVLSESIRKREIGDPSGNALSVDR-------------RARSAYFRSSPNKEL 185
           LKF+EI++++LSE IR+RE G  SG  L+  +             R++S     S +K  
Sbjct: 397 LKFEEIRNLILSEDIRRRESGVNSGLVLNTSKGRGRTMQRSENRSRSKSNRRSKSRSKGD 456

Query: 186 FRNFKSGIFDKLDSTG----YATKFGKSSWKI 201
           FR       + LD  G    +     +S WK+
Sbjct: 457 FRKVYLADDEPLDIVGKGEVHIRMLNQSVWKL 488

[Close]

BLAST of CmoCh14G012290 vs. NCBI nr
Match: gi|1012341939|gb|KYP53137.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 185.3 bits (469), Expect = 1.9e-43
Identity = 103/197 (52.28%), Postives = 134/197 (68.02%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W L DRQALG+IRLTLSRN+ FNI KEKTT  L+ ALS+MYEKPSA NKV+LMR 
Sbjct: 24  MKDDEWVLLDRQALGVIRLTLSRNVAFNIAKEKTTVGLMTALSSMYEKPSASNKVHLMRR 83

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NL+M+EG  VA H+NE + + +QLSSV I F+D+++ALIL+SSLPESW+  V A  SS
Sbjct: 84  LFNLRMAEGASVAQHLNELSTVTTQLSSVGIEFDDEVRALILLSSLPESWNATVTAVSSS 143

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGDPS------------------GNALSVDRRARSA 180
             SNKLK D+++D+VLSE IR+RE G+ S                  G   S D R++S 
Sbjct: 144 SGSNKLKSDDVRDLVLSEEIRRRESGESSTSSVLHTESRGRAPTRGNGRGKSRDNRSKSR 203

[Close]

BLAST of CmoCh14G012290 vs. NCBI nr
Match: gi|1012365254|gb|KYP76436.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan])

HSP 1 Score: 184.9 bits (468), Expect = 2.5e-43
Identity = 95/163 (58.28%), Postives = 125/163 (76.69%), Query Frame = 1


Query: 1   MTTEQWKLKDRQALGLIRLTLSRNMTFNIIKEKTTSDLLKALSNMYEKPSAMNKVYLMRT 60
           M  ++W   DR+ALG IRLTLSRN+ FNI KEKTT+ L+ ALS+MYEKPSA NKV+L+R 
Sbjct: 1   MKEDEWSFLDRKALGAIRLTLSRNVAFNIAKEKTTASLMAALSSMYEKPSAANKVHLIRR 60

Query: 61  LYNLQMSEGGFVAGHINEFNMIVSQLSSVEINFEDKIKALILMSSLPESWDTVVAATGSS 120
           L+NL+M+EG   A HINE N I  QLSSV INF+++++ALIL+SSLPESW+  V A  SS
Sbjct: 61  LFNLRMTEGASTAQHINELNTITIQLSSVGINFDEEVRALILLSSLPESWNATVTAVSSS 120

Query: 121 RVSNKLKFDEIQDVVLSESIRKREIGD-PSGNALSVDRRARSA 163
             SNKLKFD+++D+VLSE +R+RE G+  + + L  + R RS+
Sbjct: 121 SGSNKLKFDDVRDLVLSEEVRRRETGESTTSSVLHTESRGRSS 163

The following BLAST results are available for this feature:

BLAST of CmoCh14G012290 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	2.1e-18	36.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]

BLAST of CmoCh14G012290 vs. TrEMBL


Match Name	E-value	Identity	Description
K4BR07_SOLLC	9.0e-61	78.26	Uncharacterized protein OS=Solanum lycopersicum PE=4 SV=1	[more]
A0A151S0E5_CAJCA	7.7e-44	52.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151RJX3_CAJCA	7.7e-44	52.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151SEB7_CAJCA	1.3e-43	52.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]
A0A151UAT2_CAJCA	1.7e-43	58.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Cajanus cajan GN=...	[more]

BLAST of CmoCh14G012290 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G29785.1	1.4e-07	45.45	unknown protein	[more]

BLAST of CmoCh14G012290 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012336997\|gb\|KYP48283.1\|	1.1e-43	52.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012331397\|gb\|KYP42874.1\|	1.1e-43	52.79	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|672202993\|ref\|XP_008778529.1\|	1.9e-43	51.89	PREDICTED: uncharacterized protein LOC103698312 [Phoenix dactylifera]	[more]
gi\|1012341939\|gb\|KYP53137.1\|	1.9e-43	52.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]
gi\|1012365254\|gb\|KYP76436.1\|	2.5e-43	58.28	Retrovirus-related Pol polyprotein from transposon TNT 1-94 [Cajanus cajan]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G012290.1	CmoCh14G012290.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 236..256 score: -coord: 261..281 scor
None	No IPR available	PANTHER	PTHR34676	FAMILY NOT NAMED	coord: 1..161 score: 4.1
None	No IPR available	PANTHER	PTHR34676:SF1	SUBFAMILY NOT NAMED	coord: 1..161 score: 4.1
None	No IPR available	PFAM	PF14223	Retrotran_gag_2	coord: 6..144 score: 2.1

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G012290	Melon (DHL92) v3.6.1	cmomedB233
CmoCh14G012290	Melon (DHL92) v3.6.1	cmomedB240
CmoCh14G012290	Silver-seed gourd	carcmoB0283
CmoCh14G012290	Silver-seed gourd	carcmoB0817
CmoCh14G012290	Silver-seed gourd	carcmoB1036
CmoCh14G012290	Cucumber (Chinese Long) v3	cmocucB0273
CmoCh14G012290	Cucumber (Chinese Long) v3	cmocucB0316
CmoCh14G012290	Watermelon (97103) v2	cmowmbB255
CmoCh14G012290	Watermelon (97103) v2	cmowmbB262
CmoCh14G012290	Wax gourd	cmowgoB0319
CmoCh14G012290	Wax gourd	cmowgoB0352
CmoCh14G012290	Cucurbita moschata (Rifu)	cmocmoB200
CmoCh14G012290	Cucurbita moschata (Rifu)	cmocmoB202
CmoCh14G012290	Cucurbita moschata (Rifu)	cmocmoB231
CmoCh14G012290	Cucumber (Gy14) v1	cgycmoB0410
CmoCh14G012290	Cucumber (Gy14) v1	cgycmoB0984
CmoCh14G012290	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G012290	Cucurbita maxima (Rimu)	cmacmoB352
CmoCh14G012290	Cucurbita maxima (Rimu)	cmacmoB461
CmoCh14G012290	Cucurbita maxima (Rimu)	cmacmoB881
CmoCh14G012290	Wild cucumber (PI 183967)	cmocpiB234
CmoCh14G012290	Wild cucumber (PI 183967)	cmocpiB269
CmoCh14G012290	Cucumber (Chinese Long) v2	cmocuB230
CmoCh14G012290	Cucumber (Chinese Long) v2	cmocuB262
CmoCh14G012290	Melon (DHL92) v3.5.1	cmomeB206
CmoCh14G012290	Melon (DHL92) v3.5.1	cmomeB211
CmoCh14G012290	Watermelon (Charleston Gray)	cmowcgB202
CmoCh14G012290	Watermelon (Charleston Gray)	cmowcgB230
CmoCh14G012290	Watermelon (97103) v1	cmowmB218
CmoCh14G012290	Watermelon (97103) v1	cmowmB207
CmoCh14G012290	Cucurbita pepo (Zucchini)	cmocpeB226
CmoCh14G012290	Cucurbita pepo (Zucchini)	cmocpeB235
CmoCh14G012290	Cucurbita pepo (Zucchini)	cmocpeB244
CmoCh14G012290	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G012290	Bottle gourd (USVL1VR-Ls)	cmolsiB226
CmoCh14G012290	Bottle gourd (USVL1VR-Ls)	cmolsiB244
CmoCh14G012290	Cucumber (Gy14) v2	cgybcmoB283
CmoCh14G012290	Cucumber (Gy14) v2	cgybcmoB896