CmoCh14G011600 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G011600
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionTransposon Ty1-PL Gag-Pol polyprotein
LocationCmo_Chr14 : 9279253 .. 9285390 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTAAACGATCGTTTTTCAAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATATAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCGTCACAAGTTCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGGTAAAACTATTAAAACACTTCGATCAGATCGAGGAGGAGAGTACATGGACTTGAGATTTCAGGACTATATGATAGAACATGGAATAAGGTCTTAACTCTCAGCTCCTGGTATGCCTCAACAAAATGGTGTATCAGAAAGGAGAAATAGAACTCTGTTAGACATGGTTCGGTCTATGATTTGTTTCGCTCAATTACCCGATCCGTTTTGGGGAATATGCAATGGAGACAGATACATACATTTTGAACATGGTTCCTAATAAGAGTGTTTCAGAAACACCTTATAAGTTATGGAAAGGGCGTAAAGGTAGTTTACGTCACTTCAGAATTTAGGGATGTCCAGCACATGTGTTGTTGCAAAACACCAAGAAATTAGAACGTCGTTCAAAATTATCTCTATTCGTAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAGAGTGTTTGTATCAACAAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTGGTCCTTCGACAAGAGTTGTTGATGGAGCAGACACTTCTGGTCAATCACATCCTTCTCAGGAGTTGAGAATGCCTCAACGTAGTGGGAGGATTATAACTCAACCCGATCATTACTTGGGTTTAGCAGAAACTCAAGTCACCATATCTGATGATGGCGTTGAGGATCCATTTACCTATAAACAAGCAATGAATGATGAAGATAGAGATCAGTGGATTAAATCTTTGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGAAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGGTACAGACCTTTAAAGCTCGACTAGTAGCAAAGGTTATACCCAAAGAGAGGGGGTGGACTATGAAGAAACCTTCTCTCCTATTGCTATGCTTAAATCGATTAGAATACTCTTGTCTATTGCCACATTTTATGATTATGAAATTTCGCAAATGGATATTAAGACAGCCTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAATGTTTGATACTGCAATCAAATCTTATGGCTTTAAAGAGAATGTTGACGAACCTTGTATTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTGTTGTACGTTGACGATATCTTACTCATTGGAAATGATGTGGGATTTCTGACTGACATTAAGCATTGGCTAGTGACACAATTCCAAATGAAAGATTTGGGAGGCTCATTTTGTTCTTGGAATTCAAATTGTTCGGAATCTCAAGAACAAAACAATAGCATTATCTCAGGCATCGTACATCGACAAAATGTTGATTCGATATAAGATGCAGGACTCTAAGAAAGGATTATTACCTTTCAGGCATGGAGTTCATTTTTCGAAGGAACAAAGTCCTAAGACACCTCAAGAAGTTGAGGATATAAGACACATTCCATATGCATTAGCAGTCGGTAGTTTGATGTAAGCCATGCTATGTACCCGACCCGACATATGCTATGCTGTGGGAATTGTCAGCAGATATCAGTCCAATCAGGGACGTGCTCATTGGACTACCGTTAAGAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCTGATTTTCAGACCGATGTAGATTCGAGAAAATCGACATCAGGACCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAATGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAACGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGAAAGTAGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAAATGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACAAATTGAGCGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATTGTCACACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTAGTGAGTCTAGGACTACGAGTTATGTAATCTAGGGCAAGTGGGAGAAAAGGCATGAGTATATGATGCCCTAGTTTATTGTATTTATGTCTTTCTATCAACTCAACTTTATAAAACTCCACTAGAGTTTTAGTCCAAGTGGGAATTTGTTGGGTTTTATGTCCTAAAACTCATAGTTTGTAGACAAAAACATATTCTATTTTCAATAAAGTTATTATTGTTATTTATTCAGTAAAGATTGTTATTGAATAAAGCGAACTTTACGAGCATTAATCTAAATCCAATAAACTAAGAACACTCTTGCTATAGGATGATTACTTGAACTATATGTAGAGATATAAAAGTGGATCAAGTTCAAGTATATAGTCAAAATGATCTATAGTATAAGGATAAGGCTGAGTACCTTATTCTGGGGACACTATGGATGCAGCCCACTTTTGTATATGATATAAACAATGTGATCACTACATTGTACATGTGGAGACATGTGAGTGGGGGCGTCCTATGCAATGAGTATTGCATAAGATCGGACCATGAAGAAAACCACTCTCACTTTATAATGTCGTTTACTGTTGTGACTGATTTTCTTTTCATTCGATGACCTAGGTAACTCGATCTTAATCCTGAGCTAACCATGAACTCCTGTTTATTTGGAATTATCCTTAGATTTGCATGGGTTAGAGTGGCTCGAGTTTGCCGACTCAATAGGCCTCCAATTTCAAGGGTAAGACTGGGTGAATAGCTGGGGACGTGGGGTGCAAGATGGAATTCGCTCCTACCCACTTTCAGGGATAGAAGAGAGGCAGTTCCCTTAAGTACTGACTCCAGGTCTTGAACAAGGGGTCCCACCCACTCATTGGCATGAGATGGATTCAGTTTACTGGTTGGACCACAAACCAATTGTTCATAAGAGGATCAGTGGGACATAAGGAACAAGAAGCAACTTCAGGGGTAAAACAACTAATTGACCCAGCTTTAGCTACGAACAACCTGTGAAGGATCGACTTACTAATCATGGTTATATCAAATGGACAGAAATATATCTATAGTGAGGGGAGTGCAACTACTAGGCTATAGTGGAGTGTCCTAGTAGTTAACGAATGTTGTGGATTAACAAGGTTAATGAGTTTAACCGGTTAATCTTGGATCGTTGGAGCCCATGATCTATAGGTCCATTAGGTCCCTCTACTAGCTCATATCGGACTAAACAATAAAACAGTGTGACGAGTGACTTCGAAATGTTCGAATTCAAATTAAGGAATATGCGCTACATATATACGATATATTTAACCGCATTTTTGTTTTATTTACGAATTAAACAAAAAGAGAGAATTTGAGATATTTAAATAAGGTTTAAATATTTTAATCAAATATGTGTCGGAATTGATTGGGATTAGCTTTTGAGTTAATATTAAATATTAATTAAATAGTTTAACTAATCCTTTAATATTACTTTAATTTGAAATTAATTATTTAAATTAATTGTTGAATTAAAATGAAGAAAGTCAAAATGTTGACTTCATTTAATGGAAAAATTCATGTTAGTGGAATTTTGAGGTGTCAAAATTTGGTTAACTCAAACATGCATGCTTGCCACATAATCCCAAAAGTTTTAGTGGAATTTTGAGTGTCAAAATTTTGTGATCTCAAATTTGCATGAACATAAAAATGACTCTATAAATATAGAGTGATCATGGTACATGAAAGGTCTTCTTGGTAAAAAAAACCTTGAAAAAAACCTCTCACAAACACTCTCCTCATATATACAAAATCCCTCCCAAGTTTAGTCACTCCCCGGATTTCACAATCCCGTTCTAAGGCCGGAGGATAGTGAAGAAGACACTAGTGGTGGTTCGAAACCGGTTCGTGAGGAAAAAGGAATTTGAACTACAAAAGGTTAGTATTCAAATTCATTAAGTTTTAATACATATAAACATGCTAGTTATTTACTATAATTGATGTTCTAAAAGTGCCTAAGATCCAAATTGCTTGTGCATGTGTTATATTAACACCATCAAATCCCAAGGGGCTAAAGGTCGTCTTCATCGGCTATGACCCCGGGAACAAAGCGTACATACTCTATGATCCGGTAGGAGGGCGAGCTCACATATCTCGCGACGTCATCTTCGACGAAGGCACCTTTTGGCAGTGGAACAACGTGATCGAGGCAGACCACAACCCAAATCAATTCACGGTGGAGTACCTCGTCACTGAGCCGGAAGAAGGAGGAGCCCAGCATCAGGAACCGTCACCGCCGCCAGTAGGTGCACCCCCTGAACCAGTGGAGTTCACAACACCACGGACTACAGATTCGACGCTGGATGCTGATCACGATGATGATCTGGTGGCCAGGTACCGGAGGATGGACGACCTAGTGGGAGGAGGTGAACCACCTGGACTGGCAGCGCGCGAGCTCGAAGAAGTGGCCGAACTGCATGCCATAAGTGCAGATGAACTGAACACCTTTGCCGAAGTAGAAAGGAACCTGTGCTGGCTGAAGGTAATGCAAGAGGAGATGACATCCATCACCGAGAACCAGACGTGGAGTCTAGAGGATATGCCGCCGGGACATCGAGCCATAGGGCTGAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCCCGTCTGGTGGCGAAGGGCTACGTCCAAAAGCAAGGAATGGACTTCGAAGAGGTATTTGCGCCGGTGGCAAGGTTAGAATCCATCCGTCTTTTGCGGGCAATTGCAGCACATTGCTCTTGGGAGCTTCACCATATGGACGTGAAGTCTGCCTTCCTTAATGGAGAGTTGAAGGAGACCGTCTACGTCCGACAACCACCTGGCTTCCTGGACAATGACAACCCCAGTAAGGTACTGCGCCTGCACAAGGCACCTTCGACAAGCCCCACGAGCTTGGAACGCGAAGCTCGACAGTACCCTACTGTCACTAAAGTTCAAGCATTGTGCCTCTAAGCATGGCATGTACACGCATGGCTATGGCAAGCAGCGATTGATCGTGGGAGTGTACGTCGACGATCTCATAATCACTGGAGGTGACATGGAAGTCCTCGGAAGGTTCAAGAAGGAGATGTCAAAGAACTTCGAGATGAGCGATCTCGGCGTGCTCAACTACTACCTCGGCATTGAAGTGCAACAGAATTCTACTGGCATCTTCATCTGCCAAAGTGCGTATGCGAAGAAGCTGTTGGACACAATTGGGCTTACGGAGAGTAATCCTACAAGGACACCAATGGAGGCCCGGCTCCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTTCACCAATTACCACAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACACTCGTCCTGATCTTGCTTATTCTTTTGGATATGTGAGTAAGCTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCTCTATATAGCCGAAACCAGAGGCTGGGGTGTAAGATACTGCGTAGGAAGAGGAAAGGAAAAACTCAAGCTGGTCGGCTACAGTGATAGTGACATGACCGGTGATGTTGATGATCGTAAGAGCACCAGCAGAATGATCTACTTCCTTTCAGGCGGCGCGATCTGCTGGCAATCAACAAAATAG

mRNA sequence

ATGACTAAACGATCGTTTTTCAAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATATAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCGTCACAAGTTCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGATACATACATTTTGAACATGGTTCCTAATAAGAGTGTTTCAGAAACACCTTATAAGTTATGGAAAGGGCGTAAAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAGAGTGTTTGTATCAACAAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTGGTCCTTCGACAAGAGTTGTTGATGGAGCAGACACTTCTGGTCAATCACATCCTTCTCAGGAGTTGAGAATGCCTCAACGTAGTGGGAGGATTATAACTCAACCCGATCATTACTTGGGTTTAGCAGAAACTCAAGTCACCATATCTGATGATGGCGTTGAGGATCCATTTACCTATAAACAAGCAATGAATGATGAAGATAGAGATCAGTGGATTAAATCTTTGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGAAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGACAGCCTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAATGTTTGATACTGCAATCAAATCTTATGGCTTTAAAGAGAATGTTGACGAACCTTGTATTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTGTTATATCAGTCCAATCAGGGACGTGCTCATTGGACTACCGTTAAGAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCTGATTTTCAGACCGATGTAGATTCGAGAAAATCGACATCAGGACCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAATGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAACGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGAAAGTAGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAAATGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACAAATTGAGCGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATTGTCACACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTATTATTTACTATAATTGATGTTCTAAAAGTGCCTAAGATCCAAATTGCTTGTGCATGTGTTATATTAACACCATCAAATCCCAAGGGGCTAAAGGTCGTCTTCATCGGCTATGACCCCGGGAACAAAGCGTACATACTCTATGATCCGGTAGGAGGGCGAGCTCACATATCTCGCGACGTCATCTTCGACGAAGGCACCTTTTGGCAGTGGAACAACGTGATCGAGGCAGACCACAACCCAAATCAATTCACGGTGGAGTACCTCGTCACTGAGCCGGAAGAAGGAGGAGCCCAGCATCAGGAACCGTCACCGCCGCCAGTAGGTGCACCCCCTGAACCAGTGGAGTTCACAACACCACGGACTACAGATTCGACGCTGGATGCTGATCACGATGATGATCTGGTGGCCAGGTACCGGAGGATGGACGACCTAGTGGGAGGAGGTGAACCACCTGGACTGGCAGCGCGCGAGCTCGAAGAAGTGGCCGAACTGCATGCCATAAGTGCAGATGAACTGAACACCTTTGCCGAAGTAGAAAGGAACCTGTGCTGGCTGAAGGTAATGCAAGAGGAGATGACATCCATCACCGAGAACCAGACGTGGAGTCTAGAGGATATGCCGCCGGGACATCGAGCCATAGGGCTGAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCCCGTCTGGTGGCGAAGGGCTACGTCCAAAAGCAAGGAATGGACTTCGAAGAGGTATTTGCGCCGGTGGCAAGGTTAGAATCCATCCGTCTTTTGCGGGCAATTGCAGCACATTGCTCTTGGGAGCTTCACCATATGGACGTGAAGTCTGCCTTCCTTAATGGAGAGTTGAAGGAGACCGTCTACGTCCGACAACCACCTGGCTTCCTGGACAATGACAACCCCAGTAAGTTCAAGCATTGTGCCTCTAAGCATGGCATGTACACGCATGGCTATGGCAAGCAGCGATTGATCGTGGGAGTGTACGTCGACGATCTCATAATCACTGGAGGTGACATGGAAGTCCTCGGAAGGTTCAAGAAGGAGATGTCAAAGAACTTCGAGATGAGCGATCTCGGCGTGCTCAACTACTACCTCGGCATTGAAGTGCAACAGAATTCTACTGGCATCTTCATCTGCCAAAGTGCGTATGCGAAGAAGCTGTTGGACACAATTGGGCTTACGGAGAGTAATCCTACAAGGACACCAATGGAGGCCCGGCTCCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTTCACCAATTACCACAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACACTCGTCCTGATCTTGCTTATTCTTTTGGATATGTGAGTAAGCTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCTCTATATAGCCGAAACCAGAGGCTGGGGTGTAAGATACTGCGTAGGAAGAGGAAAGGAAAAACTCAAGCTGGTCGGCTACAGTGATAGTGACATGACCGGTGATGTTGATGATCGTAAGAGCACCAGCAGAATGATCTACTTCCTTTCAGGCGGCGCGATCTGCTGGCAATCAACAAAATAG

Coding sequence (CDS)

ATGACTAAACGATCGTTTTTCAAAAAAGGTTATAGAGCCAAAGAAACCTTAGAACTCGTGCATATAGATCTCTGTGGTCCAATGAATGTCAAAGCACGAGGAGGGTATGAATATTTCATCAGTTTTATTGATGATTATTCAAGGTATGACTATCTTTACCTAATGCGTCACAAGTTCGAAGCTCTTGAAAAATTCAGAGAGTATAAGACTGAGGTTGAGAATCTATTAGATACATACATTTTGAACATGGTTCCTAATAAGAGTGTTTCAGAAACACCTTATAAGTTATGGAAAGGGCGTAAAGGATACCCCAAAGAGACGAAAGGTGGTTTGTTTTATGACCCTCAAGAAAATAGAGTGTTTGTATCAACAAACGCTACATTCTTAGAGGAAGACCACGTAAGAAATCATCAACCTCGCAGCAAACTAGTATTAAGTGAGATTTCTAAAGAAGCTACTGATAAAACAACAAGAGTTGTTGATCAAGCTGGTCCTTCGACAAGAGTTGTTGATGGAGCAGACACTTCTGGTCAATCACATCCTTCTCAGGAGTTGAGAATGCCTCAACGTAGTGGGAGGATTATAACTCAACCCGATCATTACTTGGGTTTAGCAGAAACTCAAGTCACCATATCTGATGATGGCGTTGAGGATCCATTTACCTATAAACAAGCAATGAATGATGAAGATAGAGATCAGTGGATTAAATCTTTGAATCTTGAAATGGAGTCAATGTACTTCAATTCAGTCTGGAAACTTGTAGATCAACCAGATGGGGTAAAACCTATTGGTTGCAAATGGATCTATAAGAGGAAACGAGACCAAACCGGTAAGACAGCCTTTCTAAACGGCAATCTTGAAGAGAGTATCTATATGGCTCAACCAGAGGGGTTCATTGAACAGGATCACGAGCAAAGGGTTTGCAAGCTTAAAAGATCCATTTATGGGTTGAAGCAAGCATCTCGATCCTGGAATATAATGTTTGATACTGCAATCAAATCTTATGGCTTTAAAGAGAATGTTGACGAACCTTGTATTTATAAAAGGATAGTCAACTCTACAGTAGCTTTCCTAGTGTTATATCAGTCCAATCAGGGACGTGCTCATTGGACTACCGTTAAGAATATCCTCAAGTATCTTAGGAGAACGAGGGACTATATGCTAATGTACGGTGCTAAGGATCTGATCCTTACAGGGTACACTGACTCTGATTTTCAGACCGATGTAGATTCGAGAAAATCGACATCAGGACCTGTCTTCACTCTGAACGGAGGAGCAATAATATGGAGAAGCATAATGCAAGGTTGCATTGCTGATTCCACCATGGAGGCTGAGTATGTTGCTGCTTGTGAAGCAACGAAAGAATCTGTATGGCTTAGGAAGTTCTTAACTGATTTGAAAGTAGTTCCAAATATGCATCTTCCCGTCACTCTTTATTGTGATAAATGTGGAGCAGTTGCAAATTCAAAAGAACCAAGAAGCCATAAGCGAGGAAAACAAATTGAGCGCAAATATCATCTCATAAGGGAGATTGTGCAACGAGGAGATGTGATTGTCACACAGATAGCTTCAGAGCACAACATTGCTGATCCATTTACAAAGCCCCTCACGGCTAAAGTGTTTGAAGGGCACCTATTATTTACTATAATTGATGTTCTAAAAGTGCCTAAGATCCAAATTGCTTGTGCATGTGTTATATTAACACCATCAAATCCCAAGGGGCTAAAGGTCGTCTTCATCGGCTATGACCCCGGGAACAAAGCGTACATACTCTATGATCCGGTAGGAGGGCGAGCTCACATATCTCGCGACGTCATCTTCGACGAAGGCACCTTTTGGCAGTGGAACAACGTGATCGAGGCAGACCACAACCCAAATCAATTCACGGTGGAGTACCTCGTCACTGAGCCGGAAGAAGGAGGAGCCCAGCATCAGGAACCGTCACCGCCGCCAGTAGGTGCACCCCCTGAACCAGTGGAGTTCACAACACCACGGACTACAGATTCGACGCTGGATGCTGATCACGATGATGATCTGGTGGCCAGGTACCGGAGGATGGACGACCTAGTGGGAGGAGGTGAACCACCTGGACTGGCAGCGCGCGAGCTCGAAGAAGTGGCCGAACTGCATGCCATAAGTGCAGATGAACTGAACACCTTTGCCGAAGTAGAAAGGAACCTGTGCTGGCTGAAGGTAATGCAAGAGGAGATGACATCCATCACCGAGAACCAGACGTGGAGTCTAGAGGATATGCCGCCGGGACATCGAGCCATAGGGCTGAAATGGGTCTTCAAACTGAAGCGCAATGAAAAAGGAGAAGTTGTGAAGCACAAGGCCCGTCTGGTGGCGAAGGGCTACGTCCAAAAGCAAGGAATGGACTTCGAAGAGGTATTTGCGCCGGTGGCAAGGTTAGAATCCATCCGTCTTTTGCGGGCAATTGCAGCACATTGCTCTTGGGAGCTTCACCATATGGACGTGAAGTCTGCCTTCCTTAATGGAGAGTTGAAGGAGACCGTCTACGTCCGACAACCACCTGGCTTCCTGGACAATGACAACCCCAGTAAGTTCAAGCATTGTGCCTCTAAGCATGGCATGTACACGCATGGCTATGGCAAGCAGCGATTGATCGTGGGAGTGTACGTCGACGATCTCATAATCACTGGAGGTGACATGGAAGTCCTCGGAAGGTTCAAGAAGGAGATGTCAAAGAACTTCGAGATGAGCGATCTCGGCGTGCTCAACTACTACCTCGGCATTGAAGTGCAACAGAATTCTACTGGCATCTTCATCTGCCAAAGTGCGTATGCGAAGAAGCTGTTGGACACAATTGGGCTTACGGAGAGTAATCCTACAAGGACACCAATGGAGGCCCGGCTCCAACTAAGGAAGGCCGGCACTACGACGACAGTCGACTTCACCAATTACCACAGCATTGTCGGGAGTCTGCGCTATCTGGTAAACACTCGTCCTGATCTTGCTTATTCTTTTGGATATGTGAGTAAGCTTATGGAAGCACCTAGGGAGGAGCATCTAGTGGCTGTCAAGCGCATCCTGCTCTATATAGCCGAAACCAGAGGCTGGGGTGTAAGATACTGCGTAGGAAGAGGAAAGGAAAAACTCAAGCTGGTCGGCTACAGTGATAGTGACATGACCGGTGATGTTGATGATCGTAAGAGCACCAGCAGAATGATCTACTTCCTTTCAGGCGGCGCGATCTGCTGGCAATCAACAAAATAG
Homology
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BLAST of CmoCh14G011600 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 2.3e-68
Identity = 181/560 (32.32%), Postives = 285/560 (50.89%), Query Frame = 1 

Query: 568  TPSNPKGLKVVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHN--- 627
            T  + K +  +FIGY      Y L+DPV  +   SRDV+F E       ++ E   N   
Sbjct: 665  TKLDDKSIPCIFIGYGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVKNGII 724

Query: 628  PNQFTVEYLVTEPEEGGAQHQEPSPPPVGAPPEPVEFTTPRTTDSTLDADHDDDLVARYR 687
            PN  T+      P    +   E S    G  P  V     +  +   + +H      +++
Sbjct: 725  PNFVTIPSTSNNPTSAESTTDEVSEQ--GEQPGEVIEQGEQLDEGVEEVEHPTQGEEQHQ 784

Query: 688  RMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEV----ERNLCWLKVMQEEMTSI 747
             +       E P + +R       +      E  +  EV    E+N   +K MQEEM S+
Sbjct: 785  PLRR----SERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQL-MKAMQEEMESL 844

Query: 748  TENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEVFAP 807
             +N T+ L ++P G R +  KWVFKLK++   ++V++KARLV KG+ QK+G+DF+E+F+P
Sbjct: 845  QKNGTYKLVELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSP 904

Query: 808  VARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSKFKHCA 867
            V ++ SIR + ++AA    E+  +DVK+AFL+G+L+E +Y+ QP GF      +  KH  
Sbjct: 905  VVKMTSIRTILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGF----EVAGKKHMV 964

Query: 868  SKHGMYTHG------------------------------YGKQ-----RLIVGVYVDDLI 927
             K     +G                              Y K+      +I+ +YVDD++
Sbjct: 965  CKLNKSLYGLKQAPRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDML 1024

Query: 928  ITGGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEV--QQNSTGIFICQSAYAKKLLDTI 987
            I G D  ++ + K ++SK+F+M DLG     LG+++  ++ S  +++ Q  Y +++L+  
Sbjct: 1025 IVGKDKGLIAKLKGDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERF 1084

Query: 988  GLTESNPTRTPMEARLQLRKAGTTTTVDFTN------YHSIVGSLRY-LVNTRPDLAYSF 1047
             +  + P  TP+   L+L K    TTV+         Y S VGSL Y +V TRPD+A++ 
Sbjct: 1085 NMKNAKPVSTPLAGHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAV 1144

Query: 1048 GYVSKLMEAPREEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDD 1077
            G VS+ +E P +EH  AVK IL Y+  T G     C+  G     L GY+D+DM GD+D+
Sbjct: 1145 GVVSRFLENPGKEHWEAVKWILRYLRGTTG----DCLCFGGSDPILKGYTDADMAGDIDN 1204

[Close]
BLAST of CmoCh14G011600 vs. Swiss-Prot
Match: YCH4_YEAST (Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY5A PE=5 SV=2)

HSP 1 Score: 135.2 bits (339), Expect = 4.3e-30
Identity = 85/287 (29.62%), Postives = 133/287 (46.34%), Query Frame = 1 

Query: 824  MDVKSAFLNGELKETVYVRQPPGFLD----------------------------NDNPSK 883
            MDV +AFLN  + E +YV+QPPGF++                            N+   K
Sbjct: 1    MDVDTAFLNSTMDEPIYVKQPPGFVNERNPDYVWELYGGMYGLKQAPLLWNEHINNTLKK 60

Query: 884  FKHCA--SKHGMYTHGYGKQRLIVGVYVDDLIITGGDMEVLGRFKKEMSKNFEMSDLGVL 943
               C    +HG+Y        + + VYVDDL++     ++  R K+E++K + M DLG +
Sbjct: 61   IGFCRHEGEHGLYFRSTSDGPIYIAVYVDDLLVAAPSPKIYDRVKQELTKLYSMKDLGKV 120

Query: 944  NYYLGIEVQQNSTG-IFICQSAYAKKLLDTIGLTESNPTRTPMEARLQLRKAGTTTTVDF 1003
            + +LG+ + Q+S G I +    Y  K      +     T+TP+     L +  +    D 
Sbjct: 121  DKFLGLNIHQSSNGDITLSLQDYIAKAASESEINTFKLTQTPLCNSKPLFETTSPHLKDI 180

Query: 1004 TNYHSIVGSLRYLVNT-RPDLAYSFGYVSKLMEAPREEHLVAVKRILLYIAETRGWGVRY 1063
            T Y SIVG L +  NT RPD++Y    +S+ +  PR  HL + +R+L Y+  TR   ++Y
Sbjct: 181  TPYQSIVGQLLFCANTGRPDISYPVSLLSRFLREPRAIHLESARRVLRYLYTTRSMCLKY 240

Query: 1064 CVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFLSGGAICWQSTK 1079
               R   +L L  Y D+      D   ST   +  L+G  + W S K
Sbjct: 241  ---RSGSQLALTVYCDASHGAIHDLPHSTGGYVTLLAGAPVTWSSKK 284

[Close]
BLAST of CmoCh14G011600 vs. Swiss-Prot
Match: M810_ARATH (Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg00810 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-26
Identity = 64/200 (32.00%), Postives = 109/200 (54.50%), Query Frame = 1 

Query: 879  VYVDDLIITGGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKK 938
            +YVDD+++TG    +L     ++S  F M DLG ++Y+LGI+++ + +G+F+ Q+ YA++
Sbjct: 5    LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 939  LLDTIGLTESNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGY 998
            +L+  G+ +  P  TP+  +L      T    D +++ SIVG+L+YL  TRPD++Y+   
Sbjct: 65   ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 999  VSKLMEAPREEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRK 1058
            V + M  P       +KR+L Y+  T   G+         KL +  + DSD  G    R+
Sbjct: 125  VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYI---HKNSKLNVQAFCDSDWAGCTSTRR 184

Query: 1059 STSRMIYFLSGGAICWQSTK 1079
            ST+    FL    I W + +
Sbjct: 185  STTGFCTFLGCNIISWSAKR 200

[Close]
BLAST of CmoCh14G011600 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 120.6 bits (301), Expect = 1.1e-25
Identity = 69/195 (35.38%), Postives = 106/195 (54.36%), Query Frame = 1 

Query: 351  VNSTVAFLVLYQSNQGRAHWTTVKNILKYLRRTRDYMLMYG---AKDLILTGYTDSDFQT 410
            + + V  L  Y S      W  +K +L+YL+ T D  L++    A +  + GY DSD+  
Sbjct: 1199 LTTAVNILSRYSSKNNSELWQNLKRVLRYLKGTIDMKLIFKKNLAFENKIIGYVDSDWAG 1258

Query: 411  DVDSRKSTSGPVFTL-NGGAIIWRSIMQGCIADSTMEAEYVAACEATKESVWLRKFLTDL 470
                RKST+G +F + +   I W +  Q  +A S+ EAEY+A  EA +E++WL+  LT +
Sbjct: 1259 SEIDRKSTTGYLFKMFDFNLICWNTKRQNSVAASSTEAEYMALFEAVREALWLKFLLTSI 1318

Query: 471  KVVPNMHLPVTLYCDKCGAVANSKEPRSHKRGKQIERKYHLIREIVQRGDVIVTQIASEH 530
             +   +  P+ +Y D  G ++ +  P  HKR K I+ KYH  RE VQ   + +  I +E+
Sbjct: 1319 NI--KLENPIKIYEDNQGCISIANNPSCHKRAKHIDIKYHFAREQVQNNVICLEYIPTEN 1378

Query: 531  NIADPFTKPLTAKVF 542
             +AD FTKPL A  F
Sbjct: 1379 QLADIFTKPLPAARF 1391

[Close]
BLAST of CmoCh14G011600 vs. Swiss-Prot
Match: M820_ARATH (Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg00820 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 4.7e-13
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 729 WLKVMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQ 788
           W + MQEE+ +++ N+TW L   P     +G KWVFK K +  G + + KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 789 KQGMDFEEVFAPVARLESIRLLRAIA 815
           ++G+ F E ++PV R  +IR +  +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CmoCh14G011600 vs. TrEMBL
Match: Q7XPB1_ORYSJ (OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=4 SV=2)

HSP 1 Score: 559.7 bits (1441), Expect = 7.8e-156
Identity = 298/548 (54.38%), Postives = 369/548 (67.34%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPN--QFTVEYLV 636
            +V +GY+ G+KAY LYDPV  R H+SRDV+FDE   W W  V   D  P    FTVE +V
Sbjct: 780  MVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDEDIAWDWGPVTP-DGAPQLEPFTVEQVV 839

Query: 637  T---------EPEEGGAQHQEPSPPPVGAPPEP-----VEFTTPRTTDSTLDADHDDDLV 696
            T          P         PS P   APP P     VEF TP T DS LDAD DDD+V
Sbjct: 840  TTTIGTAPASSPTPPSPPSPAPSAPTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVV 899

Query: 697  ARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEMTSI 756
             RYR +D+L+G   PPG A R LE++ ELH +SADE  + AE E +  W   MQ+E+ +I
Sbjct: 900  PRYRLVDNLLGNASPPGHAPRVLEQL-ELHVVSADEPASLAEAEADPSWRGAMQDELNAI 959

Query: 757  TENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEVFAP 816
             +N TWSL D+P GHRAIGLKWV+KLKR+E+G +V++KARLVAKGYVQ+QG+DF+EVFA 
Sbjct: 960  VDNDTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLVAKGYVQRQGVDFDEVFAL 1019

Query: 817  VARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK----- 876
            VARLES+RLL A+AAH  W++HHMDVKSAFLNGEL E VYV QPPGF+D+++ +K     
Sbjct: 1020 VARLESVRLLLAVAAHQGWQVHHMDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLH 1079

Query: 877  -------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIITGGD 936
                                     F   +S+HG+YT   G +RL+VGVYVDDLIITG  
Sbjct: 1080 KALYGLRQAPRAWNAKLDSSLLSLGFHRSSSEHGVYTRTRGGRRLMVGVYVDDLIITGDH 1139

Query: 937  MEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTESNP 996
             + +  FK EM K F+MSDLG L YYLGIEV Q+S GI + Q+AYA K+L+  GL + NP
Sbjct: 1140 DDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNP 1199

Query: 997  TRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPREEH 1056
             +TPME RL+LRK      VD T Y S+VGSLRYLVNTRPDLA+S GYVS+ ME+PRE+H
Sbjct: 1200 CQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDH 1259

Query: 1057 LVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFLSGG 1079
            L AV+RIL Y+A TR WG+R+  G       LVGYSDSD+ GD D+RKSTS  I+F++GG
Sbjct: 1260 LAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGG 1319

[Close]
BLAST of CmoCh14G011600 vs. TrEMBL
Match: A0B9X7_ORYSA (OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1)

HSP 1 Score: 526.2 bits (1354), Expect = 9.6e-146
Identity = 288/548 (52.55%), Postives = 352/548 (64.23%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPN--QFTVEYLV 636
            +V +GY+ G+KAY LYDPV  R H+SRDV+FDE   W W   +  D  P    FTVE +V
Sbjct: 713  MVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDEDAAWDWGP-LTPDGAPQLEPFTVEQVV 772

Query: 637  TE-----PEEGGAQHQEPSP---------PPVGAPPEPVEFTTPRTTDSTLDADHDDDLV 696
            T      P         PSP         PP    PE VEF TP T DS LDAD DDD+V
Sbjct: 773  TTTIGTAPASSLTPPSPPSPAPSAPTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVV 832

Query: 697  ARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEMTSI 756
             RY  +D+L+G   PPG A R LE++ ELH +SADE  + AE E +  W   MQ+E+ +I
Sbjct: 833  PRYHLVDNLLGNASPPGHAPRVLEQL-ELHVVSADEPASLAEAEADPNWRGAMQDELNAI 892

Query: 757  TENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEVFAP 816
             +N TWSL D+P GHRAIGLKW                ARLVAKGYVQ+QG+DF+EVFAP
Sbjct: 893  VDNDTWSLTDLPHGHRAIGLKW----------------ARLVAKGYVQRQGVDFDEVFAP 952

Query: 817  VARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK----- 876
            VARLE +RLL AIAAH  W++HHMDVKSAFLNGEL E VYV QPPGF+D+++ +K     
Sbjct: 953  VARLELVRLLLAIAAHQGWQVHHMDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLH 1012

Query: 877  -------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIITGGD 936
                                     F   +S+HG+YT   G +RL VGVYVDDLIITG  
Sbjct: 1013 KALYGLRQAPRAWNTKLDSSLLSLGFHRSSSEHGVYTRTRGGRRLTVGVYVDDLIITGDH 1072

Query: 937  MEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTESNP 996
             + +  FK EM K F+MSDLG L YYLGIEV Q+S GI + Q+AYA K+L+  GL + NP
Sbjct: 1073 DDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNP 1132

Query: 997  TRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPREEH 1056
             +TPME RL+LRK      VD T Y S+VGSLRYLVNTRPDLA+S GYVS+ ME+PRE+H
Sbjct: 1133 CQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDH 1192

Query: 1057 LVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFLSGG 1079
            L AV+RIL Y+A TR WG+R+  G       LVGYSDSD+ GD D+RKSTS  I+F++GG
Sbjct: 1193 LAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGG 1242

[Close]
BLAST of CmoCh14G011600 vs. TrEMBL
Match: Q75IL9_ORYSJ (Pupative polyprotein OS=Oryza sativa subsp. japonica GN=P0683F12.10 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 5.1e-139
Identity = 274/551 (49.73%), Postives = 345/551 (62.61%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPNQFTVEY---- 636
            ++F+GY+PG+KAY  YDP   R HISRDV FDE   W+W+    ++ +   FT+EY    
Sbjct: 738  MIFVGYEPGSKAYRCYDPASRRVHISRDVAFDEEAQWRWDGETASELD---FTIEYTTVY 797

Query: 637  ---LVTEPEEGGAQHQEPSPPPVGAPP-----------EPVEFTTPRTTDST-LDADHDD 696
               +V  P     Q + P+P      P              EF TP T  +  LDADHDD
Sbjct: 798  HPAVVNAPRADSEQPELPTPSATSTSPCTPAATAGTTATSAEFATPPTIAADDLDADHDD 857

Query: 697  DLVARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEM 756
              + R+RR+D+++G   PPGLA RE ++  EL   SA+E  + AE ++  CW + M +EM
Sbjct: 858  APL-RFRRVDEILGPATPPGLAVREFDD--ELMMASAEEPASLAEAQQQDCWRQAMLDEM 917

Query: 757  TSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEV 816
             SI EN TW L D PP  R IGLKWVFK K++  G + KHKARLVAKGYVQ+QG+D++EV
Sbjct: 918  KSIEENGTWLLVDPPPRQRPIGLKWVFKTKKDAAGNITKHKARLVAKGYVQRQGIDYDEV 977

Query: 817  FAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK-- 876
            FAPVARLES+RLL A AA   W +HHMDVKSAFLNGELKE VYV QPPGF+ +    K  
Sbjct: 978  FAPVARLESVRLLLAYAASEGWAVHHMDVKSAFLNGELKEEVYVAQPPGFVVDGKEQKVL 1037

Query: 877  ----------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIIT 936
                                        F   AS+H +Y  G   +RL+VGVYVDDL+IT
Sbjct: 1038 RLVKALYGLRQAPRAWYTKLDASLLSLGFHRSASEHAVYMRGANARRLVVGVYVDDLVIT 1097

Query: 937  GGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTE 996
            GG+   L +FKKEM + F+MSDLG+L YYLG+EV Q   GI + Q AYAKK+L+  G+  
Sbjct: 1098 GGNHSELDQFKKEMRETFQMSDLGLLRYYLGLEVSQTDEGITLSQGAYAKKILEAAGMVG 1157

Query: 997  SNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPR 1056
             NP++TPME RL+L K  T+  VD T+Y  IVGSLRYLVN+RPDLA+S GYVS+ ME P 
Sbjct: 1158 CNPSQTPMEPRLKLSKLSTSPCVDATDYRKIVGSLRYLVNSRPDLAFSVGYVSRFMEKPT 1217

Query: 1057 EEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFL 1079
             EHL AVKR+L Y+A T   G  Y   R K  + LVG+SDSD+ GDVD RKST+ + +FL
Sbjct: 1218 TEHLAAVKRVLRYVAGTINRGCSY--RRKKGAVHLVGFSDSDLAGDVDTRKSTTGVFFFL 1277

[Close]
BLAST of CmoCh14G011600 vs. TrEMBL
Match: C7J2T2_ORYSJ (Os05g0126900 protein OS=Oryza sativa subsp. japonica GN=Os05g0126900 PE=4 SV=1)

HSP 1 Score: 503.8 bits (1296), Expect = 5.1e-139
Identity = 274/551 (49.73%), Postives = 345/551 (62.61%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPNQFTVEY---- 636
            ++F+GY+PG+KAY  YDP   R HISRDV FDE   W+W+    ++ +   FT+EY    
Sbjct: 76   MIFVGYEPGSKAYRCYDPASRRVHISRDVAFDEEAQWRWDGETASELD---FTIEYTTVY 135

Query: 637  ---LVTEPEEGGAQHQEPSPPPVGAPP-----------EPVEFTTPRTTDST-LDADHDD 696
               +V  P     Q + P+P      P              EF TP T  +  LDADHDD
Sbjct: 136  HPAVVNAPRADSEQPELPTPSATSTSPCTPAATAGTTATSAEFATPPTIAADDLDADHDD 195

Query: 697  DLVARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEM 756
              + R+RR+D+++G   PPGLA RE ++  EL   SA+E  + AE ++  CW + M +EM
Sbjct: 196  APL-RFRRVDEILGPATPPGLAVREFDD--ELMMASAEEPASLAEAQQQDCWRQAMLDEM 255

Query: 757  TSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEV 816
             SI EN TW L D PP  R IGLKWVFK K++  G + KHKARLVAKGYVQ+QG+D++EV
Sbjct: 256  KSIEENGTWLLVDPPPRQRPIGLKWVFKTKKDAAGNITKHKARLVAKGYVQRQGIDYDEV 315

Query: 817  FAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK-- 876
            FAPVARLES+RLL A AA   W +HHMDVKSAFLNGELKE VYV QPPGF+ +    K  
Sbjct: 316  FAPVARLESVRLLLAYAASEGWAVHHMDVKSAFLNGELKEEVYVAQPPGFVVDGKEQKVL 375

Query: 877  ----------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIIT 936
                                        F   AS+H +Y  G   +RL+VGVYVDDL+IT
Sbjct: 376  RLVKALYGLRQAPRAWYTKLDASLLSLGFHRSASEHAVYMRGANARRLVVGVYVDDLVIT 435

Query: 937  GGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTE 996
            GG+   L +FKKEM + F+MSDLG+L YYLG+EV Q   GI + Q AYAKK+L+  G+  
Sbjct: 436  GGNHSELDQFKKEMRETFQMSDLGLLRYYLGLEVSQTDEGITLSQGAYAKKILEAAGMVG 495

Query: 997  SNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPR 1056
             NP++TPME RL+L K  T+  VD T+Y  IVGSLRYLVN+RPDLA+S GYVS+ ME P 
Sbjct: 496  CNPSQTPMEPRLKLSKLSTSPCVDATDYRKIVGSLRYLVNSRPDLAFSVGYVSRFMEKPT 555

Query: 1057 EEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFL 1079
             EHL AVKR+L Y+A T   G  Y   R K  + LVG+SDSD+ GDVD RKST+ + +FL
Sbjct: 556  TEHLAAVKRVLRYVAGTINRGCSY--RRKKGAVHLVGFSDSDLAGDVDTRKSTTGVFFFL 615

[Close]
BLAST of CmoCh14G011600 vs. TrEMBL
Match: Q0D6W3_ORYSJ (Os07g0434200 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os07g0434200 PE=4 SV=1)

HSP 1 Score: 503.1 bits (1294), Expect = 8.7e-139
Identity = 281/552 (50.91%), Postives = 348/552 (63.04%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPNQFTVEYLV-- 636
            ++F+GY+ G+KAY +YDP   R H+SRDV+FDE   W W+    A +  + FT+EY    
Sbjct: 545  MIFVGYELGSKAYRVYDPATRRVHVSRDVVFDEEAQWNWDGEA-ATNVDSDFTIEYTTVY 604

Query: 637  ---------TEPEEGGAQHQEPSP--------PPVGAPPEPVEFTTPRT-TDSTLDADHD 696
                     T  E GGA     SP        PPV A   PVEF +P    +  LDADHD
Sbjct: 605  HPATATPTQTGTEHGGAPASPRSPASGSTPTTPPV-AEVSPVEFVSPPPDVEDDLDADHD 664

Query: 697  DDLVARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEE 756
            D  + R+RR+DD++G   PPG A REL E  EL A++A+E  +FAE E+  CW + M EE
Sbjct: 665  DAPL-RFRRIDDVLGPATPPGQAVRELSE--ELFAVTAEEPASFAEAEQLSCWRQAMIEE 724

Query: 757  MTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEE 816
            M SI  N+TW L D     R IGLKWV+K K++  G + K+KARLVAKGYVQ+QG+DF+E
Sbjct: 725  MRSIEANKTWRLVDPLARQRPIGLKWVYKAKKDAAGNITKYKARLVAKGYVQRQGIDFDE 784

Query: 817  VFAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK- 876
            VFAPVARLES+RLL A AA   W +HHMDVKSAFLNGEL E VYV QPPGF+ +    K 
Sbjct: 785  VFAPVARLESVRLLLAHAACEGWAVHHMDVKSAFLNGELLEEVYVAQPPGFVVDGQEHKV 844

Query: 877  -----------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLII 936
                                         F    S+H +Y  G G+QRL+VGVYVDDLII
Sbjct: 845  LRLDKALYGLRQAPRAWYSKLDASLLSLGFHRSDSEHAVYMRGTGEQRLVVGVYVDDLII 904

Query: 937  TGGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLT 996
            TGG+   L +FK+EM   F+MSDLG+L YYLG+EV Q   GI + Q AYA+K+L T G+ 
Sbjct: 905  TGGNPGELKQFKEEMKGTFQMSDLGLLQYYLGLEVNQTEDGITVNQRAYAEKILQTAGMV 964

Query: 997  ESNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAP 1056
             SNP+ TPME RL+L K     +VD T+Y  IVGSLRYLVN+RPDLAYS GYVS+ ME P
Sbjct: 965  ASNPSLTPMETRLKLSKMSNAPSVDATDYRWIVGSLRYLVNSRPDLAYSVGYVSRFMEKP 1024

Query: 1057 REEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYF 1079
              EHL AVKR+L Y+A + G+G  Y   + K+   LVGYSDSD+ GDVD RKSTS + +F
Sbjct: 1025 TTEHLAAVKRVLRYVAGSIGYGCHY---KRKKDASLVGYSDSDLAGDVDTRKSTSGVFFF 1084

[Close]
BLAST of CmoCh14G011600 vs. TAIR10
Match: AT4G23160.1 (AT4G23160.1 cysteine-rich RLK (RECEPTOR-like protein kinase) 8)

HSP 1 Score: 133.7 bits (335), Expect = 7.0e-31
Identity = 58/134 (43.28%), Postives = 92/134 (68.66%), Query Frame = 1 

Query: 714 ADELNTFAEVERNLCWLKVMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGE 773
           A E +T+ E +  L W   M +E+ ++    TW +  +PP  + IG KWV+K+K N  G 
Sbjct: 83  AKEPSTYNEAKEFLVWCGAMDDEIGAMETTHTWEICTLPPNKKPIGCKWVYKIKYNSDGT 142

Query: 774 VVKHKARLVAKGYVQKQGMDFEEVFAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNG 833
           + ++KARLVAKGY Q++G+DF E F+PV +L S++L+ AI+A  ++ LH +D+ +AFLNG
Sbjct: 143 IERYKARLVAKGYTQQEGIDFIETFSPVCKLTSVKLILAISAIYNFTLHQLDISNAFLNG 202

Query: 834 ELKETVYVRQPPGF 848
           +L E +Y++ PPG+
Sbjct: 203 DLDEEIYMKLPPGY 216

[Close]
BLAST of CmoCh14G011600 vs. TAIR10
Match: ATMG00810.1 (ATMG00810.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 123.2 bits (308), Expect = 9.5e-28
Identity = 64/200 (32.00%), Postives = 109/200 (54.50%), Query Frame = 1 

Query: 879  VYVDDLIITGGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKK 938
            +YVDD+++TG    +L     ++S  F M DLG ++Y+LGI+++ + +G+F+ Q+ YA++
Sbjct: 5    LYVDDILLTGSSNTLLNMLIFQLSSTFSMKDLGPVHYFLGIQIKTHPSGLFLSQTKYAEQ 64

Query: 939  LLDTIGLTESNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGY 998
            +L+  G+ +  P  TP+  +L      T    D +++ SIVG+L+YL  TRPD++Y+   
Sbjct: 65   ILNNAGMLDCKPMSTPLPLKLN-SSVSTAKYPDPSDFRSIVGALQYLTLTRPDISYAVNI 124

Query: 999  VSKLMEAPREEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRK 1058
            V + M  P       +KR+L Y+  T   G+         KL +  + DSD  G    R+
Sbjct: 125  VCQRMHEPTLADFDLLKRVLRYVKGTIFHGLYI---HKNSKLNVQAFCDSDWAGCTSTRR 184

Query: 1059 STSRMIYFLSGGAICWQSTK 1079
            ST+    FL    I W + +
Sbjct: 185  STTGFCTFLGCNIISWSAKR 200

[Close]
BLAST of CmoCh14G011600 vs. TAIR10
Match: ATMG00820.1 (ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase))

HSP 1 Score: 78.6 bits (192), Expect = 2.7e-14
Identity = 36/86 (41.86%), Postives = 55/86 (63.95%), Query Frame = 1 

Query: 729 WLKVMQEEMTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQ 788
           W + MQEE+ +++ N+TW L   P     +G KWVFK K +  G + + KARLVAKG+ Q
Sbjct: 40  WCQAMQEELDALSRNKTWILVPPPVNQNILGCKWVFKTKLHSDGTLDRLKARLVAKGFHQ 99

Query: 789 KQGMDFEEVFAPVARLESIRLLRAIA 815
           ++G+ F E ++PV R  +IR +  +A
Sbjct: 100 EEGIYFVETYSPVVRTATIRTILNVA 125

[Close]
BLAST of CmoCh14G011600 vs. NCBI nr
Match: gi|38344222|emb|CAE03692.2| (OSJNBb0026E15.10 [Oryza sativa Japonica Group])

HSP 1 Score: 559.7 bits (1441), Expect = 1.1e-155
Identity = 298/548 (54.38%), Postives = 369/548 (67.34%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPN--QFTVEYLV 636
            +V +GY+ G+KAY LYDPV  R H+SRDV+FDE   W W  V   D  P    FTVE +V
Sbjct: 780  MVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDEDIAWDWGPVTP-DGAPQLEPFTVEQVV 839

Query: 637  T---------EPEEGGAQHQEPSPPPVGAPPEP-----VEFTTPRTTDSTLDADHDDDLV 696
            T          P         PS P   APP P     VEF TP T DS LDAD DDD+V
Sbjct: 840  TTTIGTAPASSPTPPSPPSPAPSAPTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVV 899

Query: 697  ARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEMTSI 756
             RYR +D+L+G   PPG A R LE++ ELH +SADE  + AE E +  W   MQ+E+ +I
Sbjct: 900  PRYRLVDNLLGNASPPGHAPRVLEQL-ELHVVSADEPASLAEAEADPSWRGAMQDELNAI 959

Query: 757  TENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEVFAP 816
             +N TWSL D+P GHRAIGLKWV+KLKR+E+G +V++KARLVAKGYVQ+QG+DF+EVFA 
Sbjct: 960  VDNDTWSLTDLPHGHRAIGLKWVYKLKRDEQGAIVRYKARLVAKGYVQRQGVDFDEVFAL 1019

Query: 817  VARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK----- 876
            VARLES+RLL A+AAH  W++HHMDVKSAFLNGEL E VYV QPPGF+D+++ +K     
Sbjct: 1020 VARLESVRLLLAVAAHQGWQVHHMDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLH 1079

Query: 877  -------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIITGGD 936
                                     F   +S+HG+YT   G +RL+VGVYVDDLIITG  
Sbjct: 1080 KALYGLRQAPRAWNAKLDSSLLSLGFHRSSSEHGVYTRTRGGRRLMVGVYVDDLIITGDH 1139

Query: 937  MEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTESNP 996
             + +  FK EM K F+MSDLG L YYLGIEV Q+S GI + Q+AYA K+L+  GL + NP
Sbjct: 1140 DDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNP 1199

Query: 997  TRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPREEH 1056
             +TPME RL+LRK      VD T Y S+VGSLRYLVNTRPDLA+S GYVS+ ME+PRE+H
Sbjct: 1200 CQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDH 1259

Query: 1057 LVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFLSGG 1079
            L AV+RIL Y+A TR WG+R+  G       LVGYSDSD+ GD D+RKSTS  I+F++GG
Sbjct: 1260 LAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGG 1319

[Close]
BLAST of CmoCh14G011600 vs. NCBI nr
Match: gi|116634828|emb|CAH66352.1| (OSIGBa0135C09.3 [Oryza sativa Indica Group])

HSP 1 Score: 526.2 bits (1354), Expect = 1.4e-145
Identity = 288/548 (52.55%), Postives = 352/548 (64.23%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPN--QFTVEYLV 636
            +V +GY+ G+KAY LYDPV  R H+SRDV+FDE   W W   +  D  P    FTVE +V
Sbjct: 713  MVLLGYEQGSKAYRLYDPVSERVHVSRDVVFDEDAAWDWGP-LTPDGAPQLEPFTVEQVV 772

Query: 637  TE-----PEEGGAQHQEPSP---------PPVGAPPEPVEFTTPRTTDSTLDADHDDDLV 696
            T      P         PSP         PP    PE VEF TP T DS LDAD DDD+V
Sbjct: 773  TTTIGTAPASSLTPPSPPSPAPSAPTTPAPPSPPSPEAVEFVTPPTQDSILDADADDDVV 832

Query: 697  ARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEMTSI 756
             RY  +D+L+G   PPG A R LE++ ELH +SADE  + AE E +  W   MQ+E+ +I
Sbjct: 833  PRYHLVDNLLGNASPPGHAPRVLEQL-ELHVVSADEPASLAEAEADPNWRGAMQDELNAI 892

Query: 757  TENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEVFAP 816
             +N TWSL D+P GHRAIGLKW                ARLVAKGYVQ+QG+DF+EVFAP
Sbjct: 893  VDNDTWSLTDLPHGHRAIGLKW----------------ARLVAKGYVQRQGVDFDEVFAP 952

Query: 817  VARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK----- 876
            VARLE +RLL AIAAH  W++HHMDVKSAFLNGEL E VYV QPPGF+D+++ +K     
Sbjct: 953  VARLELVRLLLAIAAHQGWQVHHMDVKSAFLNGELLEEVYVSQPPGFVDDNHKNKVYRLH 1012

Query: 877  -------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIITGGD 936
                                     F   +S+HG+YT   G +RL VGVYVDDLIITG  
Sbjct: 1013 KALYGLRQAPRAWNTKLDSSLLSLGFHRSSSEHGVYTRTRGGRRLTVGVYVDDLIITGDH 1072

Query: 937  MEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTESNP 996
             + +  FK EM K F+MSDLG L YYLGIEV Q+S GI + Q+AYA K+L+  GL + NP
Sbjct: 1073 DDEIRSFKGEMMKLFKMSDLGALRYYLGIEVTQDSDGITLGQAAYAGKILEKAGLKDCNP 1132

Query: 997  TRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPREEH 1056
             +TPME RL+LRK      VD T Y S+VGSLRYLVNTRPDLA+S GYVS+ ME+PRE+H
Sbjct: 1133 CQTPMEVRLKLRKGSDFPLVDATLYRSLVGSLRYLVNTRPDLAFSVGYVSRFMESPREDH 1192

Query: 1057 LVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFLSGG 1079
            L AV+RIL Y+A TR WG+R+  G       LVGYSDSD+ GD D+RKSTS  I+F++GG
Sbjct: 1193 LAAVRRILRYVAGTRCWGIRFGPGARCALPMLVGYSDSDLAGDPDERKSTSGQIFFINGG 1242

[Close]
BLAST of CmoCh14G011600 vs. NCBI nr
Match: gi|46391155|gb|AAS90682.1| (pupative polyprotein [Oryza sativa Japonica Group])

HSP 1 Score: 503.8 bits (1296), Expect = 7.3e-139
Identity = 274/551 (49.73%), Postives = 345/551 (62.61%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPNQFTVEY---- 636
            ++F+GY+PG+KAY  YDP   R HISRDV FDE   W+W+    ++ +   FT+EY    
Sbjct: 738  MIFVGYEPGSKAYRCYDPASRRVHISRDVAFDEEAQWRWDGETASELD---FTIEYTTVY 797

Query: 637  ---LVTEPEEGGAQHQEPSPPPVGAPP-----------EPVEFTTPRTTDST-LDADHDD 696
               +V  P     Q + P+P      P              EF TP T  +  LDADHDD
Sbjct: 798  HPAVVNAPRADSEQPELPTPSATSTSPCTPAATAGTTATSAEFATPPTIAADDLDADHDD 857

Query: 697  DLVARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEM 756
              + R+RR+D+++G   PPGLA RE ++  EL   SA+E  + AE ++  CW + M +EM
Sbjct: 858  APL-RFRRVDEILGPATPPGLAVREFDD--ELMMASAEEPASLAEAQQQDCWRQAMLDEM 917

Query: 757  TSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEV 816
             SI EN TW L D PP  R IGLKWVFK K++  G + KHKARLVAKGYVQ+QG+D++EV
Sbjct: 918  KSIEENGTWLLVDPPPRQRPIGLKWVFKTKKDAAGNITKHKARLVAKGYVQRQGIDYDEV 977

Query: 817  FAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK-- 876
            FAPVARLES+RLL A AA   W +HHMDVKSAFLNGELKE VYV QPPGF+ +    K  
Sbjct: 978  FAPVARLESVRLLLAYAASEGWAVHHMDVKSAFLNGELKEEVYVAQPPGFVVDGKEQKVL 1037

Query: 877  ----------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIIT 936
                                        F   AS+H +Y  G   +RL+VGVYVDDL+IT
Sbjct: 1038 RLVKALYGLRQAPRAWYTKLDASLLSLGFHRSASEHAVYMRGANARRLVVGVYVDDLVIT 1097

Query: 937  GGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTE 996
            GG+   L +FKKEM + F+MSDLG+L YYLG+EV Q   GI + Q AYAKK+L+  G+  
Sbjct: 1098 GGNHSELDQFKKEMRETFQMSDLGLLRYYLGLEVSQTDEGITLSQGAYAKKILEAAGMVG 1157

Query: 997  SNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPR 1056
             NP++TPME RL+L K  T+  VD T+Y  IVGSLRYLVN+RPDLA+S GYVS+ ME P 
Sbjct: 1158 CNPSQTPMEPRLKLSKLSTSPCVDATDYRKIVGSLRYLVNSRPDLAFSVGYVSRFMEKPT 1217

Query: 1057 EEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFL 1079
             EHL AVKR+L Y+A T   G  Y   R K  + LVG+SDSD+ GDVD RKST+ + +FL
Sbjct: 1218 TEHLAAVKRVLRYVAGTINRGCSY--RRKKGAVHLVGFSDSDLAGDVDTRKSTTGVFFFL 1277

[Close]
BLAST of CmoCh14G011600 vs. NCBI nr
Match: gi|255675982|dbj|BAH92923.1| (Os05g0126900 [Oryza sativa Japonica Group])

HSP 1 Score: 503.8 bits (1296), Expect = 7.3e-139
Identity = 274/551 (49.73%), Postives = 345/551 (62.61%), Query Frame = 1 

Query: 577  VVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIEADHNPNQFTVEY---- 636
            ++F+GY+PG+KAY  YDP   R HISRDV FDE   W+W+    ++ +   FT+EY    
Sbjct: 76   MIFVGYEPGSKAYRCYDPASRRVHISRDVAFDEEAQWRWDGETASELD---FTIEYTTVY 135

Query: 637  ---LVTEPEEGGAQHQEPSPPPVGAPP-----------EPVEFTTPRTTDST-LDADHDD 696
               +V  P     Q + P+P      P              EF TP T  +  LDADHDD
Sbjct: 136  HPAVVNAPRADSEQPELPTPSATSTSPCTPAATAGTTATSAEFATPPTIAADDLDADHDD 195

Query: 697  DLVARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEEM 756
              + R+RR+D+++G   PPGLA RE ++  EL   SA+E  + AE ++  CW + M +EM
Sbjct: 196  APL-RFRRVDEILGPATPPGLAVREFDD--ELMMASAEEPASLAEAQQQDCWRQAMLDEM 255

Query: 757  TSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEEV 816
             SI EN TW L D PP  R IGLKWVFK K++  G + KHKARLVAKGYVQ+QG+D++EV
Sbjct: 256  KSIEENGTWLLVDPPPRQRPIGLKWVFKTKKDAAGNITKHKARLVAKGYVQRQGIDYDEV 315

Query: 817  FAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK-- 876
            FAPVARLES+RLL A AA   W +HHMDVKSAFLNGELKE VYV QPPGF+ +    K  
Sbjct: 316  FAPVARLESVRLLLAYAASEGWAVHHMDVKSAFLNGELKEEVYVAQPPGFVVDGKEQKVL 375

Query: 877  ----------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLIIT 936
                                        F   AS+H +Y  G   +RL+VGVYVDDL+IT
Sbjct: 376  RLVKALYGLRQAPRAWYTKLDASLLSLGFHRSASEHAVYMRGANARRLVVGVYVDDLVIT 435

Query: 937  GGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLTE 996
            GG+   L +FKKEM + F+MSDLG+L YYLG+EV Q   GI + Q AYAKK+L+  G+  
Sbjct: 436  GGNHSELDQFKKEMRETFQMSDLGLLRYYLGLEVSQTDEGITLSQGAYAKKILEAAGMVG 495

Query: 997  SNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAPR 1056
             NP++TPME RL+L K  T+  VD T+Y  IVGSLRYLVN+RPDLA+S GYVS+ ME P 
Sbjct: 496  CNPSQTPMEPRLKLSKLSTSPCVDATDYRKIVGSLRYLVNSRPDLAFSVGYVSRFMEKPT 555

Query: 1057 EEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYFL 1079
             EHL AVKR+L Y+A T   G  Y   R K  + LVG+SDSD+ GDVD RKST+ + +FL
Sbjct: 556  TEHLAAVKRVLRYVAGTINRGCSY--RRKKGAVHLVGFSDSDLAGDVDTRKSTTGVFFFL 615

[Close]
BLAST of CmoCh14G011600 vs. NCBI nr
Match: gi|670394026|ref|XP_008677438.1| (PREDICTED: uncharacterized protein LOC100304242 isoform X1 [Zea mays])

HSP 1 Score: 503.4 bits (1295), Expect = 9.5e-139
Identity = 264/552 (47.83%), Postives = 355/552 (64.31%), Query Frame = 1 

Query: 573  KGLKVVFIGYDPGNKAYILYDPVGGRAHISRDVIFDEGTFWQWNNVIE----ADHNPNQ- 632
            +G K++F+GY+ G+KAY  YDP   R H++RDV+FDE   W W+   +    ADH  +  
Sbjct: 516  RGRKMIFVGYERGSKAYRAYDPATKRVHVTRDVVFDESAQWDWSEGAKTGTGADHGGDDT 575

Query: 633  FTVEYLVTEPEEG---GA-----QHQEP--SPPPVGAPPEPVEFTTPRTT-DSTLDADHD 692
            FT+++ V E + G   GA     QH  P  +P   G     V+F TP    D  LDADHD
Sbjct: 576  FTIQFGVVEGQGGLQAGAPVAAMQHMTPPGTPGEAGVASPGVQFATPPAALDEDLDADHD 635

Query: 693  DDLVARYRRMDDLVGGGEPPGLAARELEEVAELHAISADELNTFAEVERNLCWLKVMQEE 752
            D+   R+R ++D+ G   PPG A R L    +L A+SA+E  + A   ++ CW + M+EE
Sbjct: 636  DNAPLRFRTVEDVTGAASPPGYAVRVLYS-EQLFAVSAEEPGSLAHAGQDPCWRRAMEEE 695

Query: 753  MTSITENQTWSLEDMPPGHRAIGLKWVFKLKRNEKGEVVKHKARLVAKGYVQKQGMDFEE 812
            + +I +N TW+L ++P G RAIGLKWVFK+K++E G VV+HKARLVAKGY Q+QG+D++E
Sbjct: 696  LRAIEDNHTWTLTELPSGQRAIGLKWVFKVKKDEHGAVVRHKARLVAKGYAQRQGIDYDE 755

Query: 813  VFAPVARLESIRLLRAIAAHCSWELHHMDVKSAFLNGELKETVYVRQPPGFLDNDNPSK- 872
            VFAPVARLE++RLL A+AA   W++HHMDVK+AFLNG+L+E VYV+Q PGF       K 
Sbjct: 756  VFAPVARLEAVRLLLALAAQEGWQVHHMDVKTAFLNGDLQEEVYVQQAPGFAQPGQEHKV 815

Query: 873  -----------------------------FKHCASKHGMYTHGYGKQRLIVGVYVDDLII 932
                                         F  C S+  +Y  G   +RL+VGVYVDDL+I
Sbjct: 816  YRLHKALYGLHQAPRAWNKKLDEQLGVLGFVRCPSEAAIYCRGRDAERLVVGVYVDDLVI 875

Query: 933  TGGDMEVLGRFKKEMSKNFEMSDLGVLNYYLGIEVQQNSTGIFICQSAYAKKLLDTIGLT 992
            TG     + +FK EM+K F+MSDLG+L+YYLGIEV+Q   GI + Q +YA+K+L+  GL 
Sbjct: 876  TGTSSSSIRKFKTEMTKIFKMSDLGLLSYYLGIEVRQEEAGIRLSQGSYARKILEKCGLE 935

Query: 993  ESNPTRTPMEARLQLRKAGTTTTVDFTNYHSIVGSLRYLVNTRPDLAYSFGYVSKLMEAP 1052
            + NP   PM+ +L+L +   ++ ++ T Y S+VGSLRYLVNTRPDLAYS GYVS+ ME P
Sbjct: 936  DCNPCTVPMQPKLKLSRESDSSKINVTEYRSLVGSLRYLVNTRPDLAYSVGYVSRFMEEP 995

Query: 1053 REEHLVAVKRILLYIAETRGWGVRYCVGRGKEKLKLVGYSDSDMTGDVDDRKSTSRMIYF 1079
              +HL AVK+IL YIA TR WG+ Y    G    +L+GYSDSDM GD+D RKSTS +++F
Sbjct: 996  HMDHLAAVKQILRYIAGTRDWGLFYSRRNGGSD-ELLGYSDSDMAGDLDGRKSTSGILFF 1055

The following BLAST results are available for this feature:
BLAST of CmoCh14G011600 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POLX_TOBAC2.3e-6832.32Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum... [more]
YCH4_YEAST4.3e-3029.62Putative transposon Ty5-1 protein YCL074W OS=Saccharomyces cerevisiae (strain AT... [more]
M810_ARATH1.7e-2632.00Uncharacterized mitochondrial protein AtMg00810 OS=Arabidopsis thaliana GN=AtMg0... [more]
COPIA_DROME1.1e-2535.38Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3[more]
M820_ARATH4.7e-1341.86Uncharacterized mitochondrial protein AtMg00820 OS=Arabidopsis thaliana GN=AtMg0... [more]
BLAST of CmoCh14G011600 vs. TrEMBL
Match NameE-valueIdentityDescription
Q7XPB1_ORYSJ7.8e-15654.38OSJNBb0026E15.10 protein OS=Oryza sativa subsp. japonica GN=OSJNBb0026E15.10 PE=... [more]
A0B9X7_ORYSA9.6e-14652.55OSIGBa0135C09.3 protein OS=Oryza sativa GN=OSIGBa0135C09.3 PE=4 SV=1[more]
Q75IL9_ORYSJ5.1e-13949.73Pupative polyprotein OS=Oryza sativa subsp. japonica GN=P0683F12.10 PE=4 SV=1[more]
C7J2T2_ORYSJ5.1e-13949.73Os05g0126900 protein OS=Oryza sativa subsp. japonica GN=Os05g0126900 PE=4 SV=1[more]
Q0D6W3_ORYSJ8.7e-13950.91Os07g0434200 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os07g0434200 ... [more]
BLAST of CmoCh14G011600 vs. TAIR10
Match NameE-valueIdentityDescription
AT4G23160.17.0e-3143.28 cysteine-rich RLK (RECEPTOR-like protein kinase) 8[more]
ATMG00810.19.5e-2832.00ATMG00810.1 DNA/RNA polymerases superfamily protein[more]
ATMG00820.12.7e-1441.86ATMG00820.1 Reverse transcriptase (RNA-dependent DNA polymerase)[more]
BLAST of CmoCh14G011600 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|38344222|emb|CAE03692.2|1.1e-15554.38OSJNBb0026E15.10 [Oryza sativa Japonica Group][more]
gi|116634828|emb|CAH66352.1|1.4e-14552.55OSIGBa0135C09.3 [Oryza sativa Indica Group][more]
gi|46391155|gb|AAS90682.1|7.3e-13949.73pupative polyprotein [Oryza sativa Japonica Group][more]
gi|255675982|dbj|BAH92923.1|7.3e-13949.73Os05g0126900 [Oryza sativa Japonica Group][more]
gi|670394026|ref|XP_008677438.1|9.5e-13947.83PREDICTED: uncharacterized protein LOC100304242 isoform X1 [Zea mays][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR013103RVT_2
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011600.1CmoCh14G011600.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 11..61
score: 1.
IPR012337Ribonuclease H-like domainunknownSSF53098Ribonuclease H-likecoord: 11..74
score: 2.4
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 743..854
score: 9.9E-48coord: 855..957
score: 3.9E-30coord: 278..361
score: 1.6
NoneNo IPR availablePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 2..90
score: 3.4E-256coord: 551..1078
score: 3.4E
NoneNo IPR availablePANTHERPTHR11439:SF127SUBFAMILY NOT NAMEDcoord: 2..90
score: 3.4E-256coord: 551..1078
score: 3.4E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 962..1030
score: 1.38E-14coord: 743..935
score: 1.38

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G011600Cucurbita moschata (Rifu)cmocmoB204
CmoCh14G011600Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G011600Cucurbita maxima (Rimu)cmacmoB246
CmoCh14G011600Cucurbita maxima (Rimu)cmacmoB463
CmoCh14G011600Cucurbita pepo (Zucchini)cmocpeB242
CmoCh14G011600Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G011600Cucurbita pepo (Zucchini)cmocpeB246
CmoCh14G011600Bottle gourd (USVL1VR-Ls)cmolsiB245
CmoCh14G011600Silver-seed gourdcarcmoB0953
CmoCh14G011600Wax gourdcmowgoB0312