CmoCh14G011420 (gene) Cucurbita moschata (Rifu)

NameCmoCh14G011420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionATP synthase subunit beta, chloroplastic
LocationCmo_Chr14 : 8450550 .. 8450869 (+)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTCCACGCTTGAAAAAAAATAACTTGGGACGTATCGCTCAAATCATTGGTCCGGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATGAAAATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATTGA

mRNA sequence

TTTCCACGCTTGAAAAAAAATAACTTGGGACGTATCGCTCAAATCATTGGTCCGGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTCAAGATATTGCCGGTCAAGAAATTAATGAAAATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATTACAACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATTGA

Coding sequence (CDS)

TTTCCACGCTTGAAAAAAAATAACTTGGGACGTATCGCTCAAATCATTGGTCCGGTACTAGATGTAGCTTTTCCCCCGGGCAAAATGCCTAATATTTACAACGCTTTGATAGTCAAGATATTGCCGGTCAAGAAATTAATGAAAATGCCTAATATTTACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATTACAACAACGCTTTGATAGTTAAAGGTCAAGATATTGCCGGTCAAGAAATTAATGTGACTTGTGAAGTACAACAATTATTAGGAAATAATTGA
BLAST of CmoCh14G011420 vs. Swiss-Prot
Match: ATPB_CUCSA (ATP synthase subunit beta, chloroplastic OS=Cucumis sativus GN=atpB PE=3 SV=2)

HSP 1 Score: 93.6 bits (231), Expect = 1.3e-18
Identity = 56/96 (58.33%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           +GQ                  EINVTCEVQQLLGNN
Sbjct: 75  SGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. Swiss-Prot
Match: ATPB_MORIN (ATP synthase subunit beta, chloroplastic OS=Morus indica GN=atpB PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-17
Identity = 52/98 (53.06%), Postives = 56/98 (57.14%), Query Frame = 1

Query: 2   PRLKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQ 61
           P L+K NLGRIAQIIGPVLDVAFPPG                    KMPNIYNAL+VKG+
Sbjct: 13  PALEKKNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALVVKGR 72

Query: 62  DIAGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           D  GQ+                  INVTCEVQQLLGNN
Sbjct: 73  DTVGQQ------------------INVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. Swiss-Prot
Match: ATPB_MANES (ATP synthase subunit beta, chloroplastic OS=Manihot esculenta GN=atpB PE=3 SV=1)

HSP 1 Score: 88.6 bits (218), Expect = 4.2e-17
Identity = 53/96 (55.21%), Postives = 56/96 (58.33%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+K NLGRIAQIIGPVLDVAFPPG                    KMPNIYNAL+VKG+D 
Sbjct: 17  LEKKNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALVVKGRDT 74

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 77  AGQ------------------EINVTCEVQQLLGNN 74

BLAST of CmoCh14G011420 vs. Swiss-Prot
Match: ATPB_RAPSA (ATP synthase subunit beta, chloroplastic OS=Raphanus sativus GN=atpB PE=2 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.2e-17
Identity = 52/95 (54.74%), Postives = 55/95 (57.89%), Query Frame = 1

Query: 5   KKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDIA 64
           +KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNAL+VKG+D  
Sbjct: 16  EKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALVVKGRDTL 72

Query: 65  GQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           GQE                  INVTCEVQQLLGNN
Sbjct: 76  GQE------------------INVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. Swiss-Prot
Match: ATPB_BRANA (ATP synthase subunit beta, chloroplastic OS=Brassica napus GN=atpB PE=3 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 7.2e-17
Identity = 52/95 (54.74%), Postives = 55/95 (57.89%), Query Frame = 1

Query: 5   KKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDIA 64
           +KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNAL+VKG+D  
Sbjct: 16  EKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALVVKGRDTL 72

Query: 65  GQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           GQE                  INVTCEVQQLLGNN
Sbjct: 76  GQE------------------INVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. TrEMBL
Match: A0A0S2IHG8_CUCPE (ATP synthase subunit beta OS=Cucurbita pepo var. ozarkana GN=atpB PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. TrEMBL
Match: A0A0S2IEY8_9ROSI (ATP synthase subunit beta OS=Cucurbita argyrosperma subsp. sororia GN=atpB PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. TrEMBL
Match: A0A0S2IDQ9_9ROSI (ATP synthase subunit beta OS=Cucurbita argyrosperma GN=atpB PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. TrEMBL
Match: A0A0S2IGP7_CUCMO (ATP synthase subunit beta OS=Cucurbita moschata GN=atpB PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. TrEMBL
Match: A0A0S2IGI6_CUCPE (ATP synthase subunit beta OS=Cucurbita pepo subsp. pepo GN=atpB PE=3 SV=1)

HSP 1 Score: 94.7 bits (234), Expect = 6.5e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. TAIR10
Match: ATCG00480.1 (ATCG00480.1 ATP synthase subunit beta)

HSP 1 Score: 85.5 bits (210), Expect = 2.0e-17
Identity = 51/95 (53.68%), Postives = 54/95 (56.84%), Query Frame = 1

Query: 5   KKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDIA 64
           +K NLGRIAQIIGPVLDVAFPPG                    KMPNIYNAL+VKG+D  
Sbjct: 16  EKKNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALVVKGRDTL 72

Query: 65  GQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           GQE                  INVTCEVQQLLGNN
Sbjct: 76  GQE------------------INVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. NCBI nr
Match: gi|952954366|gb|ALO21730.1| (AtpB (plastid) [Cucurbita argyrosperma])

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. NCBI nr
Match: gi|346578198|ref|YP_004841790.1| (ATP synthase CF1 beta subunit [Cucumis melo subsp. melo])

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. NCBI nr
Match: gi|952955214|gb|ALO22565.1| (AtpB (plastid) [Cucurbita pepo subsp. fraterna])

HSP 1 Score: 94.7 bits (234), Expect = 9.4e-17
Identity = 57/96 (59.38%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 75  AGQ------------------EINVTCEVQQLLGNN 72

BLAST of CmoCh14G011420 vs. NCBI nr
Match: gi|14718024|gb|AAK72753.1| (ATP synthase beta subunit, partial (chloroplast) [Cucurbita pepo])

HSP 1 Score: 94.0 bits (232), Expect = 1.6e-16
Identity = 56/96 (58.33%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           ++KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 8   IEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 65

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           AGQ                  EINVTCEVQQLLGNN
Sbjct: 68  AGQ------------------EINVTCEVQQLLGNN 65

BLAST of CmoCh14G011420 vs. NCBI nr
Match: gi|590000422|ref|YP_009004051.1| (ATP synthase CF1 beta subunit [Cucumis hystrix])

HSP 1 Score: 93.6 bits (231), Expect = 2.1e-16
Identity = 56/96 (58.33%), Postives = 58/96 (60.42%), Query Frame = 1

Query: 4   LKKNNLGRIAQIIGPVLDVAFPPGKMPNIYNALIVKILPVKKLMKMPNIYNALIVKGQDI 63
           L+KNNLGRIAQIIGPVLDVAFPPG                    KMPNIYNALIVKGQDI
Sbjct: 15  LEKNNLGRIAQIIGPVLDVAFPPG--------------------KMPNIYNALIVKGQDI 72

Query: 64  AGQEINYNNALIVKGQDIAGQEINVTCEVQQLLGNN 100
           +GQ                  EINVTCEVQQLLGNN
Sbjct: 75  SGQ------------------EINVTCEVQQLLGNN 72

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
ATPB_CUCSA1.3e-1858.33ATP synthase subunit beta, chloroplastic OS=Cucumis sativus GN=atpB PE=3 SV=2[more]
ATPB_MORIN4.2e-1753.06ATP synthase subunit beta, chloroplastic OS=Morus indica GN=atpB PE=3 SV=1[more]
ATPB_MANES4.2e-1755.21ATP synthase subunit beta, chloroplastic OS=Manihot esculenta GN=atpB PE=3 SV=1[more]
ATPB_RAPSA7.2e-1754.74ATP synthase subunit beta, chloroplastic OS=Raphanus sativus GN=atpB PE=2 SV=1[more]
ATPB_BRANA7.2e-1754.74ATP synthase subunit beta, chloroplastic OS=Brassica napus GN=atpB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
A0A0S2IHG8_CUCPE6.5e-1759.38ATP synthase subunit beta OS=Cucurbita pepo var. ozarkana GN=atpB PE=3 SV=1[more]
A0A0S2IEY8_9ROSI6.5e-1759.38ATP synthase subunit beta OS=Cucurbita argyrosperma subsp. sororia GN=atpB PE=3 ... [more]
A0A0S2IDQ9_9ROSI6.5e-1759.38ATP synthase subunit beta OS=Cucurbita argyrosperma GN=atpB PE=3 SV=1[more]
A0A0S2IGP7_CUCMO6.5e-1759.38ATP synthase subunit beta OS=Cucurbita moschata GN=atpB PE=3 SV=1[more]
A0A0S2IGI6_CUCPE6.5e-1759.38ATP synthase subunit beta OS=Cucurbita pepo subsp. pepo GN=atpB PE=3 SV=1[more]
Match NameE-valueIdentityDescription
ATCG00480.12.0e-1753.68ATCG00480.1 ATP synthase subunit beta[more]
Match NameE-valueIdentityDescription
gi|952954366|gb|ALO21730.1|9.4e-1759.38AtpB (plastid) [Cucurbita argyrosperma][more]
gi|346578198|ref|YP_004841790.1|9.4e-1759.38ATP synthase CF1 beta subunit [Cucumis melo subsp. melo][more]
gi|952955214|gb|ALO22565.1|9.4e-1759.38AtpB (plastid) [Cucurbita pepo subsp. fraterna][more]
gi|14718024|gb|AAK72753.1|1.6e-1658.33ATP synthase beta subunit, partial (chloroplast) [Cucurbita pepo][more]
gi|590000422|ref|YP_009004051.1|2.1e-1658.33ATP synthase CF1 beta subunit [Cucumis hystrix][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004100ATPase_F1/V1/A1_a/bsu_N
Vocabulary: Biological Process
TermDefinition
GO:0015992proton transport
GO:0046034ATP metabolic process
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0046034 ATP metabolic process
biological_process GO:0015992 proton transport
cellular_component GO:0044424 intracellular part
cellular_component GO:0016020 membrane
molecular_function GO:0003674 molecular_function

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011420.1CmoCh14G011420.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainPFAMPF02874ATP-synt_ab_Ncoord: 12..39
score: 4.
IPR004100ATPase, F1 complex alpha/beta subunit, N-terminal domainunknownSSF50615N-terminal domain of alpha and beta subunits of F1 ATP synthasecoord: 8..40
score: 5.49
NoneNo IPR availableGENE3DG3DSA:2.40.10.170coord: 4..39
score: 3.6E-13coord: 47..99
score: 4.
NoneNo IPR availablePANTHERPTHR15184ATP SYNTHASEcoord: 3..44
score: 5.0E-13coord: 84..99
score: 5.0
NoneNo IPR availablePANTHERPTHR15184:SF43ATP SYNTHASE SUBUNIT BETA, CHLOROPLASTICcoord: 84..99
score: 5.0E-13coord: 3..44
score: 5.0

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None