CmoCh14G011390 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G011390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionF-box family protein
LocationCmo_Chr14 : 8102531 .. 8102878 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGTTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCAGGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCACATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

mRNA sequence

ATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGTTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCAGGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCACATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA

Coding sequence (CDS)

ATGACTCTAGCAGTTGAGCCAGGATTCTCAATTTCTATATTTGATACCATGAGTGTATCCGTGCTCGTGAGATGCAAGAATTCCAACAAAGTTACTCAAGTAGTCAATAAATCTGTATTTGATTATTTCGATAAAATGTCAGGTAGGGCATTTTGTTTTGACTATCTTGATTTCTCACATCTCTACCCTCTTGTCTCTGGAATTCGAGCATGGGTCTCATTGCTTTTCTTGGACAACAATGAAAATGACGGTGTAGTTGATGTTAATGGGATAGTAATGGATTTTTGTGATGTTGCAAAGACAAAAGATGAGGTATTATGGCTTTTCGACTTGCTCAATTGGAATTGA
Homology
[Close]
BLAST of CmoCh14G011390 vs. Swiss-Prot
Match: FB270_ARATH (F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 1.1e-29
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           M +  EP F+I +  ++SVSVLV   +S+KV +++N+SVFDY D+ S RA  F+YLD S 
Sbjct: 136 MVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSP 195

Query: 61  LYPLVSGIRAWVSLLFLD--NNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            YP +SGIRAW+SLLF+D  +  +DG++DV GI +DF DVA TK+EVLWL D+L+W
Sbjct: 196 CYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDW 251

[Close]
BLAST of CmoCh14G011390 vs. TrEMBL
Match: A0A0A0L6S1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1)

HSP 1 Score: 156.8 bits (395), Expect = 1.6e-35
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP FSI I +T+S SVLV  K+SNKV ++VNKSVFDY D+ S RA  FDYLDFS 
Sbjct: 136 MTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDRTSYRALAFDYLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            +P VSGIRAW+SLLF+D+ + DG +DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 196 FHPFVSGIRAWISLLFMDDGD-DGAIDVFGIVMDFCDAANTKDEVLWLLDLLDW 248

[Close]
BLAST of CmoCh14G011390 vs. TrEMBL
Match: A0A161Y7G0_DAUCA (Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025424 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 1.1e-31
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MT +V+P FS+ +  T+SVS+LV  K+SNKV  ++NKSVFDY D+ S RA  FDYL+FS 
Sbjct: 136 MTFSVDPRFSVPLCQTISVSMLVGRKDSNKVACIINKSVFDYIDRTSYRALAFDYLEFSS 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
            YP VSGIRAW+SLLF+D    + V+DV G+ +DFCD A ++DEVLWLFD+L+WN
Sbjct: 196 SYPFVSGIRAWMSLLFMDKGSEE-VIDVFGVEIDFCDAANSEDEVLWLFDMLDWN 249

[Close]
BLAST of CmoCh14G011390 vs. TrEMBL
Match: W9QIP2_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_021013 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 1.9e-31
Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL +EP F++ +  T+SVSVLV  K+SN V  V+NKSVFDY D+ + RA  FD+LDFS 
Sbjct: 136 MTLPIEPRFTVPVSQTVSVSVLVERKDSNMVACVINKSVFDYVDRSAYRAMAFDFLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           +YP VSGIRAW+SLLF+D+  ++GV DV GI MDFCD A +K+EVLWL D+L+W
Sbjct: 196 VYPFVSGIRAWISLLFMDDG-SEGVFDVFGIQMDFCDAANSKEEVLWLLDMLDW 248

[Close]
BLAST of CmoCh14G011390 vs. TrEMBL
Match: B9H0J7_POPTR (F-box family protein OS=Populus trichocarpa GN=POPTR_0004s11850g PE=4 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 5.4e-31
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP F + + +T+SVSVLV  K+SN+V  ++NKSVFDY D+ S RA  FDYL  S 
Sbjct: 136 MTLPVEPRFKVPLGETVSVSVLVGRKDSNRVACIINKSVFDYIDRTSYRAMAFDYLGLSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            +P V GIRAW+SLLF+D + ND V+DV GI MDFCD AK++DEVLWL D+L+W
Sbjct: 196 AHPFVPGIRAWISLLFMD-DRNDSVIDVFGIEMDFCDAAKSRDEVLWLLDILDW 248

[Close]
BLAST of CmoCh14G011390 vs. TrEMBL
Match: D7SVC8_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00520 PE=4 SV=1)

HSP 1 Score: 139.4 bits (350), Expect = 2.7e-30
Identity = 65/114 (57.02%), Postives = 89/114 (78.07%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP F++ +  T+SVSVLV  K+S KV  ++NKS+FDY D+ + RA  FDYLDFS 
Sbjct: 136 MTLLVEPRFTVPLMATVSVSVLVGRKDSKKVACIINKSMFDYIDRTAYRALAFDYLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           +YP +SGIRAW+SLLF+++  N+GV++V G+ MDFCD A ++ EVLWL D+L+W
Sbjct: 196 IYPFISGIRAWISLLFMEDG-NEGVINVFGLEMDFCDAANSEPEVLWLLDMLDW 248

[Close]
BLAST of CmoCh14G011390 vs. TAIR10
Match: AT5G39250.1 (AT5G39250.1 F-box family protein)

HSP 1 Score: 130.6 bits (327), Expect = 6.3e-31
Identity = 63/116 (54.31%), Postives = 87/116 (75.00%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           M +  EP F+I +  ++SVSVLV   +S+KV +++N+SVFDY D+ S RA  F+YLD S 
Sbjct: 136 MVVPAEPRFTIPLNQSVSVSVLVARNDSDKVARIINRSVFDYIDRSSYRALAFEYLDLSP 195

Query: 61  LYPLVSGIRAWVSLLFLD--NNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            YP +SGIRAW+SLLF+D  +  +DG++DV GI +DF DVA TK+EVLWL D+L+W
Sbjct: 196 CYPFISGIRAWISLLFMDVEDMNDDGLLDVFGIQLDFNDVADTKEEVLWLLDMLDW 251

[Close]
BLAST of CmoCh14G011390 vs. NCBI nr
Match: gi|659095831|ref|XP_008448789.1| (PREDICTED: F-box protein At5g39250 [Cucumis melo])

HSP 1 Score: 157.5 bits (397), Expect = 1.4e-35
Identity = 79/114 (69.30%), Postives = 91/114 (79.82%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP FSI I + +S SVLV  K+SNKV ++VNKSVFDY D+ S RA  FDYLDFS 
Sbjct: 136 MTLPVEPRFSIPISNAVSASVLVGRKDSNKVARIVNKSVFDYIDRTSYRALAFDYLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           L+P VSGIRAW+SLLF+D+  NDG +DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 196 LHPFVSGIRAWISLLFMDDG-NDGAIDVFGIVMDFCDAANTKDEVLWLLDLLDW 248

[Close]
BLAST of CmoCh14G011390 vs. NCBI nr
Match: gi|449458996|ref|XP_004147232.1| (PREDICTED: F-box protein At5g39250 [Cucumis sativus])

HSP 1 Score: 156.8 bits (395), Expect = 2.3e-35
Identity = 78/114 (68.42%), Postives = 91/114 (79.82%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP FSI I +T+S SVLV  K+SNKV ++VNKSVFDY D+ S RA  FDYLDFS 
Sbjct: 136 MTLTVEPRFSIPISNTVSASVLVGRKDSNKVARIVNKSVFDYIDRTSYRALAFDYLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            +P VSGIRAW+SLLF+D+ + DG +DV GIVMDFCD A TKDEVLWL DLL+W
Sbjct: 196 FHPFVSGIRAWISLLFMDDGD-DGAIDVFGIVMDFCDAANTKDEVLWLLDLLDW 248

[Close]
BLAST of CmoCh14G011390 vs. NCBI nr
Match: gi|1021030564|gb|KZM88349.1| (hypothetical protein DCAR_025424 [Daucus carota subsp. sativus])

HSP 1 Score: 144.1 bits (362), Expect = 1.6e-31
Identity = 68/115 (59.13%), Postives = 89/115 (77.39%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MT +V+P FS+ +  T+SVS+LV  K+SNKV  ++NKSVFDY D+ S RA  FDYL+FS 
Sbjct: 136 MTFSVDPRFSVPLCQTISVSMLVGRKDSNKVACIINKSVFDYIDRTSYRALAFDYLEFSS 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNWN 116
            YP VSGIRAW+SLLF+D    + V+DV G+ +DFCD A ++DEVLWLFD+L+WN
Sbjct: 196 SYPFVSGIRAWMSLLFMDKGSEE-VIDVFGVEIDFCDAANSEDEVLWLFDMLDWN 249

[Close]
BLAST of CmoCh14G011390 vs. NCBI nr
Match: gi|703073724|ref|XP_010089620.1| (hypothetical protein L484_021013 [Morus notabilis])

HSP 1 Score: 143.3 bits (360), Expect = 2.7e-31
Identity = 69/114 (60.53%), Postives = 89/114 (78.07%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL +EP F++ +  T+SVSVLV  K+SN V  V+NKSVFDY D+ + RA  FD+LDFS 
Sbjct: 136 MTLPIEPRFTVPVSQTVSVSVLVERKDSNMVACVINKSVFDYVDRSAYRAMAFDFLDFSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
           +YP VSGIRAW+SLLF+D+  ++GV DV GI MDFCD A +K+EVLWL D+L+W
Sbjct: 196 VYPFVSGIRAWISLLFMDDG-SEGVFDVFGIQMDFCDAANSKEEVLWLLDMLDW 248

[Close]
BLAST of CmoCh14G011390 vs. NCBI nr
Match: gi|224080243|ref|XP_002306068.1| (F-box family protein [Populus trichocarpa])

HSP 1 Score: 141.7 bits (356), Expect = 7.8e-31
Identity = 69/114 (60.53%), Postives = 87/114 (76.32%), Query Frame = 1 

Query: 1   MTLAVEPGFSISIFDTMSVSVLVRCKNSNKVTQVVNKSVFDYFDKMSGRAFCFDYLDFSH 60
           MTL VEP F + + +T+SVSVLV  K+SN+V  ++NKSVFDY D+ S RA  FDYL  S 
Sbjct: 136 MTLPVEPRFKVPLGETVSVSVLVGRKDSNRVACIINKSVFDYIDRTSYRAMAFDYLGLSP 195

Query: 61  LYPLVSGIRAWVSLLFLDNNENDGVVDVNGIVMDFCDVAKTKDEVLWLFDLLNW 115
            +P V GIRAW+SLLF+D + ND V+DV GI MDFCD AK++DEVLWL D+L+W
Sbjct: 196 AHPFVPGIRAWISLLFMD-DRNDSVIDVFGIEMDFCDAAKSRDEVLWLLDILDW 248

The following BLAST results are available for this feature:
BLAST of CmoCh14G011390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
FB270_ARATH1.1e-2954.31F-box protein At5g39250 OS=Arabidopsis thaliana GN=At5g39250 PE=2 SV=1[more]
BLAST of CmoCh14G011390 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0L6S1_CUCSA1.6e-3568.42Uncharacterized protein OS=Cucumis sativus GN=Csa_3G017250 PE=4 SV=1[more]
A0A161Y7G0_DAUCA1.1e-3159.13Uncharacterized protein OS=Daucus carota subsp. sativus GN=DCAR_025424 PE=4 SV=1[more]
W9QIP2_9ROSA1.9e-3160.53Uncharacterized protein OS=Morus notabilis GN=L484_021013 PE=4 SV=1[more]
B9H0J7_POPTR5.4e-3160.53F-box family protein OS=Populus trichocarpa GN=POPTR_0004s11850g PE=4 SV=1[more]
D7SVC8_VITVI2.7e-3057.02Putative uncharacterized protein OS=Vitis vinifera GN=VIT_14s0068g00520 PE=4 SV=... [more]
BLAST of CmoCh14G011390 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G39250.16.3e-3154.31 F-box family protein[more]
BLAST of CmoCh14G011390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659095831|ref|XP_008448789.1|1.4e-3569.30PREDICTED: F-box protein At5g39250 [Cucumis melo][more]
gi|449458996|ref|XP_004147232.1|2.3e-3568.42PREDICTED: F-box protein At5g39250 [Cucumis sativus][more]
gi|1021030564|gb|KZM88349.1|1.6e-3159.13hypothetical protein DCAR_025424 [Daucus carota subsp. sativus][more]
gi|703073724|ref|XP_010089620.1|2.7e-3160.53hypothetical protein L484_021013 [Morus notabilis][more]
gi|224080243|ref|XP_002306068.1|7.8e-3160.53F-box family protein [Populus trichocarpa][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011390.1CmoCh14G011390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR20995FAMILY NOT NAMEDcoord: 1..114
score: 4.2
NoneNo IPR availablePANTHERPTHR20995:SF15SUBFAMILY NOT NAMEDcoord: 1..114
score: 4.2

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G011390ClCG07G007400Watermelon (Charleston Gray)cmowcgB229
CmoCh14G011390Lsi07G010060Bottle gourd (USVL1VR-Ls)cmolsiB245
CmoCh14G011390Cp4.1LG03g09550Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G011390Bhi01G001649Wax gourdcmowgoB0312
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G011390Wild cucumber (PI 183967)cmocpiB236
CmoCh14G011390Cucumber (Chinese Long) v2cmocuB233
CmoCh14G011390Melon (DHL92) v3.5.1cmomeB219
CmoCh14G011390Watermelon (Charleston Gray)cmowcgB208
CmoCh14G011390Watermelon (97103) v1cmowmB215
CmoCh14G011390Cucurbita pepo (Zucchini)cmocpeB242
CmoCh14G011390Bottle gourd (USVL1VR-Ls)cmolsiB231
CmoCh14G011390Cucumber (Gy14) v2cgybcmoB286
CmoCh14G011390Silver-seed gourdcarcmoB0953
CmoCh14G011390Cucumber (Chinese Long) v3cmocucB0277
CmoCh14G011390Watermelon (97103) v2cmowmbB231
CmoCh14G011390Wax gourdcmowgoB0291
CmoCh14G011390Cucurbita moschata (Rifu)cmocmoB204
CmoCh14G011390Cucumber (Gy14) v1cgycmoB0928
CmoCh14G011390Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G011390Cucurbita maxima (Rimu)cmacmoB463