CmoCh14G011230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G011230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DNA-directed RNA polymerase (2.7.7.6)
Location	Cmo_Chr14 : 7814920 .. 7818695 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGGTAGCATGCTGATTTTTGGACGCTTGATGGTCTCGATGGACCCTTTTGAAGTTAGATACTTTTTATGTTTTTATTCCTGCATTGCACCTTGTAGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTATCCTTTTGAAGTTCAGGTACTTTTCTTGTTTTTATTCTTGTGTTACACCTTTTAGTTGCTCTATTCCTCGGGACTAGGAGTAGGAGAAATGGAAAGTGATTTTTTTTATTGCTTATAGTGCTAGCATGCTGATTTTTGGACGCTTAATGATCTCGATCGATCATTTTGAAGTTCAAGTACTTTTCTTATTTTTATTTTTGCGTGCACCTTGTAGTTGCTCTAAGAATTCCTCTTCTAGGTGGGATGCTCTTCACCATGTATCCTTTGCAGGATGTCATGTTTGGCCTCATGTTTCCCTCACCTAGAAGAGATGCCCTGCACTATGTTACGGGTACCCAAAAGATTTGCAGGATGCCATGTTCATGTATGTACCGAGCACGTGACCTTTATGATCTATCATGGGGAGTAGTCTAGGGCCACGATGGAACAAGAATAGAGCAAGTTACCTTAGCCACAAATCAAAAACCTCCTTAGACCTCCCATGATACAACATGCTCATGACTTAGACTACGCTGCTTGGAATGCATGAAGCTTGAGCATAGGTATTCAGATTGTATCATAGGGCAAGCCCTTGATGTAGGATTAGACTACATCGCTTGAAATCTAAGAAGCCTTGGATTTAGGTTTTCATACTATGCCATTTGGAACGTTATGAAGCCTTGGACATAAGTTAAGTAGATCGTATCGAAGGGCAAGCCCTAAGATGCGGGTTAAGACAACGTTGCTTGGAACGCATGAAGCCTTGGACACAGGATTGTCAGGCGCATGGTTGTGTCATAAATCCTAGGGGGAGTGTCTTAGAGAACGAACCAAGAACAGAACAAGAACCTAGAAAGTACCAAGAACAAGTGAAAGATCAAGGACTAGAACATGGATCAAGATCCTAATTCTAAGGAAAGAACCAAGAACAAAGGACCAAAAACCAAGAACCAAGAACCATAGTACTAACGCCCTTAAAGGAAAACCAAGGTTTTAGAATTCAAGGACCAAGGTCTTTAGGATAGATCAAAGTAAGAGCCCCAAGTCAAGAACAAGAACTAGAGGGCCTAAGTACTTACAACAAGAACAAAATAGGAACAAGAACAAGACAAGAATAAAGAATGTGGTACCTTAGCATATCAAGGACACGATTAAGAGCCTACAAGTAGGCTACTTACTGAGTTTTTGTACTCATTCCTTATTCTCCATTTTTTTGCAGGTGATAAGGAGCTGGTCGAGGTCGGTAGCGGACTCTAGAGCAGGTGCCATAGACAAACCTCATTGGTCGTCCTCAACCTTTTTGTTTTAAAATTTTTTTGTGTCCATTCCTTATTTTGTGTTTTAACCATTATGTCATACATTAAATTACTAATGTGTGCGCGGTATAATGTAAATTATATTTTAAGTTTTAATTGTTTTATTTCGCGAAAAATTTACCCATCTTTTAGAGTCATCGAGTCAGCCTAGTCCTTATAATTTTGGATTCAGGTGCATCGTTTCATTCATCTCCAAATCAGGAATTATTTCAAAATTTCAAATTAAAATTTTTTGGGAAGGTGTATCTTGCCGACAACAAAACCTTGGAGATTGAAGGAAAGTGAGATGTTTGCATACAAACTTCAGCAGAAAATCAATGGACATTAATGGATGTCAAATATATTCCTGGTCTCGAGAAGAACCTGATCTCTATTGGTCATTTGGATAGCACAGGTTATGCAGCTGAGTTTGGAAAGAGTTTGTGGAAGATTGTGAAGGGTGCCATAGTGGTAGCTCGTGGCACAAAATCTGGAACCCTATACGCCACTGCACGGTGTATAAACATAACACCTGTTGCTGAGAGTGCTTCAAATTCAAGTCTATGACATAATAGACTTGGACATATGAGCATTAATGAAATGAAGATGCTGGCTGTGAAATGAGTTTTGGAAGGTCTGAAATTTGTTGATATGAATCCTGGTGAGAATTGTGTTATGAGCAAGCAGAAACGAGTTAGTTTCACAAAGACTGTCAAATAATTGAAGAAAGGTTCCGAGACAACGAAGCAAGTGGGAGTTGAGGTTGAGTTGCAGAATAATTCACAGGGTGATGTTGTTGCAGATACTCAAGAAATTTCTGAGAATGTTGCTGAGGAATCAGAAGCGGAGCAAGTGACACATGAGTAGATGTTGAGAAGATCATCCAAGACTATTAGAATATCAAATAGGTATTCACTTTCATTATACTATCTATTGCTTACTATGAAGGGGAACCAAAGTCCTTTGATGAAATCCTATAGTTGGAGAATACAACCAAGTGGAAGCAAGCCATGGATGATGAGATGTCTTGTTTTTATTCCTCAGTTGTAGTTGCTTTATTTCTCAGGACTATGAGCAGGAGAAATGGAACATGGTTGTTTGATTGTTTATGGTGCTAGCATGTTGATTTTTGGACATTTAATGGTCTCGAGCGATCCTTTTGAAATTCAGGTACTTTTCTTGTTTTTATTCATGCATTGCACCTTGTATTGCTCTATTTCTCAAGACTTCGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTCATGGTGCTAACATGCTTATTTTTTAACACTTAATGGTCTCGAGCGATTCTTTTGAAGTTTAGGTACTTTTCTTGTTTTTATTCGTGTGTTGCATGCTTCTGATTTAGTGTTACAACAAATGAAGTATAAGCATTTTTTATTTTCACGTATGTAAGGTCTAGCGTGGCTCAACCACATGAGGCTTTATTCCCATCATCATATCAAGTCATCTCATCATCATGCATCTTACATTATCCTATTAAGTTATCTCATCATCATTATCATGTCATCGTCATGTCATCATCTCAAATCATCATATACATCATTACACCATCATATAGCATCATTACATCATCATATAATACCATTCAAACATCATCACATAATCTCGTCACATCATCATACAAAATCATTACATCATCACATAACATAAAGCATAAATGACACGTGCCAGGACCACTAGGCATGTGTCACTAGTCATAAGGAAAGTCTTCCGACTGAGACGATAGTAAGACCACTTACTTGGTTAGCCTTAGCCGTCGTTCTCCCTAAATACGAATGCTTGATTACGTCTCTCGAAGTTGCCCAAGTGACGTCGATGTGCGCCCTATTAGAAAAATCATCTAATTTCCTTAGTAATTCTAATTTCTTAGCAAAACTTAACTTATATTTTGAAATCGGGCTTTATATTGACCTTCAATTAAAAAAAAGGTCAATATCAGCTCCAGAAGGGTAAAAAAATGTAAGGAACCATGTGAGAATTGTCAGCCCAAGCCGAGCTGAGTCAAGCCGACAAACCTGAAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTGATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGATCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA

mRNA sequence

ATGGTGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTATCCTTTTGAAGTTCAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTGATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGATCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA

Coding sequence (CDS)

ATGGTGGTTCTCTATTTTTCAGGACTACGAGTAGGAGAAATGGAACGTGATTGTTTGATTGCTTATGGTGCTAGCTTGCTGATTTTTGGATGCTTGATGGTCTCGAGCTATCCTTTTGAAGTTCAGGGAGTCGTTGGTTGCAGGCACAACATGTGTCAAGGGGAGGAGCTGGTGGGTCATTCTTCTCCCCCACAACTTTTTCGTGATTTCAAACTCGCTGATGTCATTTCCATCGCCGTTTTCCTTTCTCCTCAATTCATTGTGAGTCCTACTTGGCTTGTCTCACGCTCCTACGGTGTTGTAATGTCTCAGACGTACCTACAACACAGATCTATTTACTTACAAATACAACGAGGCCAAGTTAGTTGCGAGTGA

Homology

[Close]

BLAST of CmoCh14G011230 vs. Swiss-Prot
Match: NRPC2_ARATH (DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana GN=NRPC2 PE=2 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 5.3e-09
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
            GLRVGEMERDCLIAYGAS+LI+  LM+SS PFEVQ    C
Sbjct: 1068 GLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRAC 1107

[Close]

BLAST of CmoCh14G011230 vs. Swiss-Prot
Match: RPC2_DROME (DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII128 PE=2 SV=2)

HSP 1 Score: 55.1 bits (131), Expect = 6.5e-07
Identity = 34/80 (42.50%), Postives = 43/80 (53.75%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRH-------NMCQGEELVGH 67
            GLR+GEMERDCLI+YGAS+LI   LM+SS  FEV     C         + CQ    V  
Sbjct: 1050 GLRLGEMERDCLISYGASMLIMERLMISSDAFEVDVCRTCGRMAYCSWCHFCQSSANVSK 1109

Query: 68   SSPPQ----LFRDFKLADVI 77
             S P     LF++    +V+
Sbjct: 1110 ISMPYACKLLFQELTSMNVV 1129

[Close]

BLAST of CmoCh14G011230 vs. Swiss-Prot
Match: RPC2_MOUSE (DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-06
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV 42
            GLR+GEMERDCLI YGAS+L+   LM+SS  FEV
Sbjct: 1044 GLRLGEMERDCLIGYGASMLLLERLMISSDAFEV 1077

[Close]

BLAST of CmoCh14G011230 vs. Swiss-Prot
Match: RPC2_HUMAN (DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2)

HSP 1 Score: 51.6 bits (122), Expect = 7.1e-06
Identity = 24/34 (70.59%), Postives = 28/34 (82.35%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEV 42
            GLR+GEMERDCLI YGAS+L+   LM+SS  FEV
Sbjct: 1044 GLRLGEMERDCLIGYGASMLLLERLMISSDAFEV 1077

[Close]

BLAST of CmoCh14G011230 vs. Swiss-Prot
Match: RPC2_YEAST (DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RET1 PE=1 SV=2)

HSP 1 Score: 51.2 bits (121), Expect = 9.3e-06
Identity = 28/54 (51.85%), Postives = 36/54 (66.67%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGCRHNMCQGEELVGHS 62
            GLR+GEMERDC+IAYGAS L+   LM+SS  FEV        ++C    L+G+S
Sbjct: 1059 GLRLGEMERDCVIAYGASQLLLERLMISSDAFEV--------DVCDKCGLMGYS 1104

[Close]

BLAST of CmoCh14G011230 vs. TrEMBL
Match: A0A0D2V0R1_GOSRA (DNA-directed RNA polymerase subunit beta OS=Gossypium raimondii GN=B456_012G019600 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
            GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 1065 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1099

[Close]

BLAST of CmoCh14G011230 vs. TrEMBL
Match: A0A0B0MH19_GOSAR (DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_10055 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
            GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 1052 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1086

[Close]

BLAST of CmoCh14G011230 vs. TrEMBL
Match: A0A0D2VUG6_GOSRA (DNA-directed RNA polymerase subunit beta OS=Gossypium raimondii GN=B456_012G019600 PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
            GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 1064 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1098

[Close]

BLAST of CmoCh14G011230 vs. TrEMBL
Match: W9RD68_9ROSA (DNA-directed RNA polymerase III subunit RPC2 OS=Morus notabilis GN=L484_011540 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
           GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 346 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 380

[Close]

BLAST of CmoCh14G011230 vs. TrEMBL
Match: V4T2Q0_9ROSI (DNA-directed RNA polymerase subunit beta OS=Citrus clementina GN=CICLE_v10000078mg PE=3 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 3.5e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
            GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 1056 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1090

[Close]

BLAST of CmoCh14G011230 vs. TAIR10
Match: AT5G45140.1 (AT5G45140.1 nuclear RNA polymerase C2)

HSP 1 Score: 62.0 bits (149), Expect = 3.0e-10
Identity = 30/40 (75.00%), Postives = 33/40 (82.50%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQGVVGC 48
            GLRVGEMERDCLIAYGAS+LI+  LM+SS PFEVQ    C
Sbjct: 1068 GLRVGEMERDCLIAYGASMLIYERLMISSDPFEVQVCRAC 1107

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: gi|641827371|gb|KDO46556.1| (hypothetical protein CISIN_1g0010922mg, partial [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
           GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 357 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 391

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: gi|703114301|ref|XP_010100609.1| (DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
           GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 346 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 380

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: gi|296087814|emb|CBI35070.3| (unnamed protein product [Vitis vinifera])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8   GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
           GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 368 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 402

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: gi|763808127|gb|KJB75029.1| (hypothetical protein B456_012G019600 [Gossypium raimondii])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
            GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 1065 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1099

[Close]

BLAST of CmoCh14G011230 vs. NCBI nr
Match: gi|568883649|ref|XP_006494572.1| (PREDICTED: DNA-directed RNA polymerase III subunit 2 [Citrus sinensis])

HSP 1 Score: 62.8 bits (151), Expect = 5.0e-07
Identity = 31/35 (88.57%), Postives = 32/35 (91.43%), Query Frame = 1


Query: 8    GLRVGEMERDCLIAYGASLLIFGCLMVSSYPFEVQ 43
            GLRVGEMERDCLIAYGAS+LIF  LMVSS PFEVQ
Sbjct: 1056 GLRVGEMERDCLIAYGASMLIFERLMVSSDPFEVQ 1090

The following BLAST results are available for this feature:

BLAST of CmoCh14G011230 vs. Swiss-Prot


Match Name	E-value	Identity	Description
NRPC2_ARATH	5.3e-09	75.00	DNA-directed RNA polymerase III subunit 2 OS=Arabidopsis thaliana GN=NRPC2 PE=2 ...	[more]
RPC2_DROME	6.5e-07	42.50	DNA-directed RNA polymerase III subunit RPC2 OS=Drosophila melanogaster GN=RpIII...	[more]
RPC2_MOUSE	7.1e-06	70.59	DNA-directed RNA polymerase III subunit RPC2 OS=Mus musculus GN=Polr3b PE=1 SV=2	[more]
RPC2_HUMAN	7.1e-06	70.59	DNA-directed RNA polymerase III subunit RPC2 OS=Homo sapiens GN=POLR3B PE=1 SV=2	[more]
RPC2_YEAST	9.3e-06	51.85	DNA-directed RNA polymerase III subunit RPC2 OS=Saccharomyces cerevisiae (strain...	[more]

BLAST of CmoCh14G011230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0D2V0R1_GOSRA	3.5e-07	88.57	DNA-directed RNA polymerase subunit beta OS=Gossypium raimondii GN=B456_012G0196...	[more]
A0A0B0MH19_GOSAR	3.5e-07	88.57	DNA-directed RNA polymerase subunit beta OS=Gossypium arboreum GN=F383_10055 PE=...	[more]
A0A0D2VUG6_GOSRA	3.5e-07	88.57	DNA-directed RNA polymerase subunit beta OS=Gossypium raimondii GN=B456_012G0196...	[more]
W9RD68_9ROSA	3.5e-07	88.57	DNA-directed RNA polymerase III subunit RPC2 OS=Morus notabilis GN=L484_011540 P...	[more]
V4T2Q0_9ROSI	3.5e-07	88.57	DNA-directed RNA polymerase subunit beta OS=Citrus clementina GN=CICLE_v10000078...	[more]

BLAST of CmoCh14G011230 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G45140.1	3.0e-10	75.00	nuclear RNA polymerase C2	[more]

BLAST of CmoCh14G011230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|641827371\|gb\|KDO46556.1\|	5.0e-07	88.57	hypothetical protein CISIN_1g0010922mg, partial [Citrus sinensis]	[more]
gi\|703114301\|ref\|XP_010100609.1\|	5.0e-07	88.57	DNA-directed RNA polymerase III subunit RPC2 [Morus notabilis]	[more]
gi\|296087814\|emb\|CBI35070.3\|	5.0e-07	88.57	unnamed protein product [Vitis vinifera]	[more]
gi\|763808127\|gb\|KJB75029.1\|	5.0e-07	88.57	hypothetical protein B456_012G019600 [Gossypium raimondii]	[more]
gi\|568883649\|ref\|XP_006494572.1\|	5.0e-07	88.57	PREDICTED: DNA-directed RNA polymerase III subunit 2 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR007641	RNA_pol_Rpb2_7
IPR015712	DNA-dir_RNA_pol_su2

Vocabulary: **Biological Process**
Term	Definition
GO:0006351	transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003677	DNA binding
GO:0003899	DNA-directed RNA polymerase activity
GO:0032549	ribonucleoside binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006144	purine nucleobase metabolic process
biological_process	GO:0006206	pyrimidine nucleobase metabolic process
biological_process	GO:0006351	transcription, DNA-templated
cellular_component	GO:0005730	nucleolus
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed RNA polymerase activity
molecular_function	GO:0032549	ribonucleoside binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G011230.1	CmoCh14G011230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007641	RNA polymerase Rpb2, domain 7	PFAM	PF04560	RNA_pol_Rpb2_7	coord: 8..50 score: 5.7
IPR015712	DNA-directed RNA polymerase, subunit 2	PANTHER	PTHR20856	DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2	coord: 8..53 score: 2.3
None	No IPR available	PANTHER	PTHR20856:SF8	DNA-DIRECTED RNA POLYMERASE III SUBUNIT RPC2	coord: 8..53 score: 2.3
None	No IPR available	unknown	SSF64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 8..59 score: 7.32

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G011230	Cucumber (Chinese Long) v3	cmocucB0277
CmoCh14G011230	Watermelon (97103) v2	cmowmbB229
CmoCh14G011230	Watermelon (97103) v2	cmowmbB231
CmoCh14G011230	Wax gourd	cmowgoB0279
CmoCh14G011230	Wax gourd	cmowgoB0291
CmoCh14G011230	Cucurbita maxima (Rimu)	cmacmoB245
CmoCh14G011230	Wild cucumber (PI 183967)	cmocpiB236
CmoCh14G011230	Cucumber (Chinese Long) v2	cmocuB233
CmoCh14G011230	Melon (DHL92) v3.5.1	cmomeB213
CmoCh14G011230	Watermelon (Charleston Gray)	cmowcgB206
CmoCh14G011230	Watermelon (Charleston Gray)	cmowcgB208
CmoCh14G011230	Watermelon (97103) v1	cmowmB213
CmoCh14G011230	Watermelon (97103) v1	cmowmB215
CmoCh14G011230	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G011230	Bottle gourd (USVL1VR-Ls)	cmolsiB228
CmoCh14G011230	Bottle gourd (USVL1VR-Ls)	cmolsiB231
CmoCh14G011230	Cucumber (Gy14) v2	cgybcmoB286
CmoCh14G011230	Melon (DHL92) v3.6.1	cmomedB242