CmoCh14G011150 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G011150
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat
LocationCmo_Chr14 : 7572480 .. 7575463 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGAACAGTAATGGAGATAAATCCTATAACAAAGGAAAATATTCTTAAAGGTAGAGCCAAGGAGCATAATGCCAATGTCATTTTTTCAAACCTTCTGTGTTTCCTTGGCCACTCTGCCATCCAAAGTTAAGACCAACTTTGAAGCTTCTATCCAAGAAGTATCCGATGGGACTTCATTCTTTTCACTGCCTCCCCTTGGAACTGTAGTTCAGAGTTATGTTTTGCTTTTGCTTTTGTTTTTGAATTATGATGCGTCTTCTATTCTCCTAAACTGGAGGGCTTTCATGTTAATCTCTCTGGATTTTTATTCATCCTTTCTTTGTCTATCAGTTAAATTGTTTCTTATATCAGACAAATGCTATTGACAGTTCTTTGCTAGTAATGATATTAATTTTTTTTTTCTAGCATGGCCATTGCAGTAAAAAAAATTGTGTTGCTTTGTCAGTTGCTCAATTTGTGTAGACATCCATCATATTTCAACGATGTATGTATTTAGTCCGTGACTTACTACTATGTCATAAAAGTTGCAACGATATTGTGATAGGCCTCCTATTAGAAATGCATGTTAAAGCAAGCGTATGAGGAGAACAGAGGGGGTTTGGGGAATGTAATTAGTTGGTAAGGGGGTACTTATGTGATTAGATATCCAGTTGTCTTGACAGTCTTGACCCATTCTATGATTCTTCCCTTGGTTGTTGCCATTCTTGACAAATAATATTGAGAGCATTTCACATTGTGGAGAAAGAATAAGTGATTTTTAATTGTTACTGTAATTAAAATGTGTTGTAAAGATTTCATTCTCGAATTTTATACTGAATTGTATGGTATTCTTTGTGGCGTTGAATTGTCCTTGTTTATTAGTATTATTTTCTCGTTCTAACAAAGTCTGCTGTATTATCCTTTATTTAAAGGATCTATTTACGCCAAGAATTTTGTGATGTTATTATTAACAGGAATCTTGATCTGTTCATGAGTGGAGAATGGAGAGTTACACTTTTAATTGATATGTTCTATTGTTAATATGATGAAAAATAAAAATTTTCGTCTTGTCTACTTTCAACAGATGCTTACTGGTTGTATCAAGGTTGAACATGGTTATGCCAAAGCATTGGAGCTTCTAAAGGAGTCGCAAAACAATGGACTATGCATGGATTCTGTGTCGTATGGGACACTGATAGCTGTTTGTGCTTCACATAATAGATTGGAAGACGCAGAGAGTTTCTTCAACCAGATGAAAAATGAAGGCTATTCGCCAAATATGTTTCATTATGGCTCGCTACTCAATGCTTATTCAATGAGTGGAGATTATAAAAAGGCTGATGAGCTGATCGAGGATATGAAATTGAAGGGGTTAGTACCAAATAAGGTTTGTTTTTTTGTTATGGTGCCTTCGAAACTTTAGATTGTATTTATATATGAATAATTTTTATGAGAAGAATCGAGAAGAAAGCATAGTAATTTGTTCGGGAAATATACGAAGTTATATGGTTAAAGTCCTATTAATTGTAAAAGAATGAGTTGTAAAGACTTCCATGGAGTTGTAAAGACTACAGAAAAGATTGGGAAGAAATTGCCTAGAGAGAGGAAGTTCACCATGGATTTAATAGATAAAGTGCCATCATTTTCAAGGTTCCAATATAGTTGGTCTGATAGGATGCGGACGCCTTTCCTGAAAAGGTTAACAGCAAAAGCATTCTAGTCTTCTGCATCTCTATCCTTGAGAGCACCCCAGTGATCGTACACATTCTACCATTGTTGGTGGAAAGCACACAGAGTCTGGATATTTGAGTTTGAGGTAGCGTGGACCTAACCTGTCATCATATTAGAAGAGAGAGCTGGAGCGATCATCAATTTTAATGGAAATGTTAGCATGCAGTATTTCTGGGTACAAATAGTTATATACTTGTTTGTTAAAATTATTTCAATATGCCATGGAAGACAACTCTACAGTTATAAGATATTTGACTTGATGGCACAAGTATTGAAATCAATGTTTAAGTACATCTGAATGTGTTTATTTACATCATACCGGTCCATGTTACTCTGGAGAATCTGGAAATCATTAACTTTTCCCTCAAAAAGTTTAGGGTTAGGCTTCAAAAGTACATGTGAGAGAAGTTATAAAAATGTGGTTAAAAAATACGACTATAGTTTCTCTGGCTTATTTAGAAATATATATATATATATTCTTTTTTTTTAATGCTTACAATGGAATTTTTTTTTTCATTTCTAAAAAATTGCACACGGTTGATATTCAAGTTTTCTGTCTACTTGCAGTTGTTTGTTTCTTATAAAAAAGTATCTACTTGCAGGTGATTTTAACAACATTGCTGAAGGTTTATGTCAGGGGAGGTTTGTTTGAGAAATCAAGGAAACTCTTATCAGAACTGGAAGCCCTTGGCTACGGTGAAAATGAGGTCTGTGCCAATGATTTGTGGTAGTATTACTTTTTGTACATTTGCAGCTGATGTTTGCTAATTACCATTTGTTTATATGATTCTCTCCACACTAGAAAGATGGTCATATTGTTGGTTTTCATGTTTGTACTTTCCAAAATGGTTAAATTACAAGTTTAGTCTGTAAACCGTGAAGTTTGTGTTTATTTGACATTTGAACTTTCAAAAGTGTTTAATAGGTCCTTAATTTTTCAATTTTGTGTCTAACAGGTCCTTGAGCTTTCAATTTTGTGCCCAGTAGATCTGTGAATTTAAAAAATATCGGGAGAGACTAATCTGTAGGGATCAAACTATACACAAACTTCAAAGTTTAAGTACTAAATTTGTAATTTAATGTTTCAAAATTTGTTAATTTCTAGTTTGGTAGTTCCGTTGGGTTGAGTAATTGGTAGGGCTTAAGAAGTGAATACGATGAAGGATGCAAAGGTTTCATGACATTGACTTGGAAGATCACTACTTGGCTGCCGTTCTTCTCTGGTTATATTTTTTTCTCCTCCAATAGGAGTTGATGAAGCTGAGCTATTGA

mRNA sequence

ATGGGAACAGTAATGGAGATAAATCCTATAACAAAGGAAAATATTCTTAAAGGTAGAGCCAAGGAGCATAATGCCAATATGCTTACTGGTTGTATCAAGGTTGAACATGGTTATGCCAAAGCATTGGAGCTTCTAAAGGAGTCGCAAAACAATGGACTATGCATGGATTCTGTGTCGTATGGGACACTGATAGCTGTTTGTGCTTCACATAATAGATTGGAAGACGCAGAGAGTTTCTTCAACCAGATGAAAAATGAAGGCTATTCGCCAAATATGTTTCATTATGGCTCGCTACTCAATGCTTATTCAATGAGTGGAGATTATAAAAAGGCTGATGAGCTGATCGAGGATATGAAATTGAAGGGGTTAGTACCAAATAAGGTGATTTTAACAACATTGCTGAAGGTTTATGTCAGGGGAGGTTTGTTTGAGAAATCAAGGAAACTCTTATCAGAACTGGAAGCCCTTGGCTACGGTGAAAATGAGGAGTTGATGAAGCTGAGCTATTGA

Coding sequence (CDS)

ATGGGAACAGTAATGGAGATAAATCCTATAACAAAGGAAAATATTCTTAAAGGTAGAGCCAAGGAGCATAATGCCAATATGCTTACTGGTTGTATCAAGGTTGAACATGGTTATGCCAAAGCATTGGAGCTTCTAAAGGAGTCGCAAAACAATGGACTATGCATGGATTCTGTGTCGTATGGGACACTGATAGCTGTTTGTGCTTCACATAATAGATTGGAAGACGCAGAGAGTTTCTTCAACCAGATGAAAAATGAAGGCTATTCGCCAAATATGTTTCATTATGGCTCGCTACTCAATGCTTATTCAATGAGTGGAGATTATAAAAAGGCTGATGAGCTGATCGAGGATATGAAATTGAAGGGGTTAGTACCAAATAAGGTGATTTTAACAACATTGCTGAAGGTTTATGTCAGGGGAGGTTTGTTTGAGAAATCAAGGAAACTCTTATCAGAACTGGAAGCCCTTGGCTACGGTGAAAATGAGGAGTTGATGAAGCTGAGCTATTGA
Homology
[Close]
BLAST of CmoCh14G011150 vs. Swiss-Prot
Match: PPR31_ARATH (Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidopsis thaliana GN=At1g10910 PE=2 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-47
Identity = 89/136 (65.44%), Postives = 116/136 (85.29%), Query Frame = 1 

Query: 27  MLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNE 86
           +L GCIKV++GY KA+EL+ E  +NG+ MDSV YGT++A+CAS+ R E+AE+F  QMK E
Sbjct: 207 LLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVE 266

Query: 87  GYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKS 146
           G+SPN++HY SLLN+YS  GDYKKADEL+ +MK  GLVPNKV++TTLLKVY++GGLF++S
Sbjct: 267 GHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRS 326

Query: 147 RKLLSELEALGYGENE 163
           R+LLSELE+ GY ENE
Sbjct: 327 RELLSELESAGYAENE 342

[Close]
BLAST of CmoCh14G011150 vs. Swiss-Prot
Match: PP442_ARATH (Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 38/122 (31.15%), Postives = 70/122 (57.38%), Query Frame = 1 

Query: 40  KALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNEGYSPNMFHYGSLL 99
           +A    +   + G+  D+ +Y  L+     +++++DAE  F +M+ +G +P++F YG L+
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 100 NAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELEALGYG 159
           N +S  G+ +KA  + ++M  +GL PN +I   LL  + R G  EK+++LL E+   G  
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694

Query: 160 EN 162
            N
Sbjct: 695 PN 696

[Close]
BLAST of CmoCh14G011150 vs. Swiss-Prot
Match: PP325_ARATH (Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidopsis thaliana GN=At4g19440 PE=2 SV=2)

HSP 1 Score: 79.0 bits (193), Expect = 5.7e-14
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 41  ALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNEGYSPNMFHYGSLLN 100
           ALEL ++ ++ G+  +S +Y +LI   +  +R+E+A+  F +M+ EG  PN+FHY +L++
Sbjct: 677 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 736

Query: 101 AYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELEALG 158
            Y   G   K + L+ +M  K + PNK+  T ++  Y R G   ++ +LL+E+   G
Sbjct: 737 GYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 793

[Close]
BLAST of CmoCh14G011150 vs. Swiss-Prot
Match: PP241_ARATH (Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidopsis thaliana GN=EMB1270 PE=2 SV=2)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 35/122 (28.69%), Postives = 72/122 (59.02%), Query Frame = 1 

Query: 41  ALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNEGYSPNMFHYGSLLN 100
           A+ELL   +N+GL  D+++Y TL++ C+  + L+ A   F  M+     P+++ Y ++++
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMIS 340

Query: 101 AYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELEALGYGE 160
            Y   G   +A+ L  +++LKG  P+ V   +LL  + R    EK +++  +++ +G+G+
Sbjct: 341 VYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400

Query: 161 NE 163
           +E
Sbjct: 401 DE 402

[Close]
BLAST of CmoCh14G011150 vs. Swiss-Prot
Match: PP178_ARATH (Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidopsis thaliana GN=At2g31400 PE=2 SV=1)

HSP 1 Score: 73.2 bits (178), Expect = 3.1e-12
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 1 

Query: 12  KENILKGRAKEHNANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHN 71
           KE  L+     +NA ++  C K    + +  +   E Q NG+  D +++ +L+AVC+   
Sbjct: 295 KEYGLRPNLVTYNA-VIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGG 354

Query: 72  RLEDAESFFNQMKNEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILT 131
             E A + F++M N     ++F Y +LL+A    G    A E++  M +K ++PN V  +
Sbjct: 355 LWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 414

Query: 132 TLLKVYVRGGLFEKSRKLLSELEALG 158
           T++  + + G F+++  L  E+  LG
Sbjct: 415 TVIDGFAKAGRFDEALNLFGEMRYLG 439

[Close]
BLAST of CmoCh14G011150 vs. TrEMBL
Match: A0A0A0LCK2_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842670 PE=4 SV=1)

HSP 1 Score: 250.0 bits (637), Expect = 2.1e-63
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + MLTGCI+V+HGYAKA+ELLKE Q+NGLCMD VSYGTLIA+CASHNRLEDAE FFNQM+
Sbjct: 127 STMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVSYGTLIAICASHNRLEDAERFFNQMR 186

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
            EG+SPNMFHYGSLLNAYS++GDYKKADELIEDMKL GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 187 AEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFE 246

Query: 145 KSRKLLSELEALGYGENE 163
           KSRKLLSELE+LGYGENE
Sbjct: 247 KSRKLLSELESLGYGENE 264

[Close]
BLAST of CmoCh14G011150 vs. TrEMBL
Match: M5XK80_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002505mg PE=4 SV=1)

HSP 1 Score: 209.9 bits (533), Expect = 2.4e-51
Identity = 100/138 (72.46%), Postives = 123/138 (89.13%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + +L GC KV+HGY+KALEL++E Q N L MDSV YGTL+AVCAS+N+LE+AE +F QMK
Sbjct: 208 STLLAGCNKVKHGYSKALELVQELQRNELQMDSVIYGTLLAVCASNNKLEEAEGYFKQMK 267

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
           NEGY PN+FHY ++LNAYS+SG+YK+AD+L++DMK  GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 268 NEGYLPNVFHYSAMLNAYSISGNYKEADDLVQDMKSAGLVPNKVILTTLLKVYVRGGLFE 327

Query: 145 KSRKLLSELEALGYGENE 163
           KSR+LL+ELEALGY E+E
Sbjct: 328 KSRELLAELEALGYAEDE 345

[Close]
BLAST of CmoCh14G011150 vs. TrEMBL
Match: D7SZY3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01820 PE=4 SV=1)

HSP 1 Score: 204.5 bits (519), Expect = 1.0e-49
Identity = 98/138 (71.01%), Postives = 121/138 (87.68%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + +L GC+KV+HGY+KALEL++E + + L MDSV YGTL+AVCAS+NR ++AE++FNQMK
Sbjct: 209 STLLAGCMKVKHGYSKALELVQEMERSRLPMDSVIYGTLLAVCASNNRCKEAENYFNQMK 268

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
           +EG+ PN+FHY SLLNAYS  GDYKKAD L++DMK  GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 269 DEGHLPNVFHYSSLLNAYSADGDYKKADMLVQDMKSAGLVPNKVILTTLLKVYVRGGLFE 328

Query: 145 KSRKLLSELEALGYGENE 163
           KSR+LL+ELE LGY E+E
Sbjct: 329 KSRELLAELEDLGYAEDE 346

[Close]
BLAST of CmoCh14G011150 vs. TrEMBL
Match: B9GEW2_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21880g PE=4 SV=2)

HSP 1 Score: 202.6 bits (514), Expect = 3.8e-49
Identity = 95/138 (68.84%), Postives = 120/138 (86.96%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + +L GC+K++ GY+KAL+L++E   NGL MDS+ YGTL+AVCAS+NR E+A+S+FNQMK
Sbjct: 223 STLLAGCMKIKDGYSKALDLVQELNYNGLQMDSIMYGTLLAVCASNNRCEEAQSYFNQMK 282

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
           +EG+SPN+FHY SLLNAYS  G+YKKA+EL++DMK  GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 283 DEGHSPNIFHYSSLLNAYSSDGNYKKAEELVQDMKSSGLVPNKVILTTLLKVYVRGGLFE 342

Query: 145 KSRKLLSELEALGYGENE 163
           KSR LL EL+ LG+ +NE
Sbjct: 343 KSRDLLVELDTLGFAKNE 360

[Close]
BLAST of CmoCh14G011150 vs. TrEMBL
Match: A0A061DZ53_THECC (Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_006909 PE=4 SV=1)

HSP 1 Score: 201.1 bits (510), Expect = 1.1e-48
Identity = 97/136 (71.32%), Postives = 117/136 (86.03%), Query Frame = 1 

Query: 27  MLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNE 86
           +L GCIK++HG++KALEL+KE + NGL MDSV YGTL+AVCAS    E+A+++FNQM+ E
Sbjct: 205 LLAGCIKIKHGHSKALELIKELKYNGLKMDSVMYGTLLAVCASSGLHEEAQNYFNQMREE 264

Query: 87  GYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKS 146
           G+SPN++HY SLLNAYS  G+Y KADEL+E MK  GLVPNKVILTTLLKVYVRGGLFEKS
Sbjct: 265 GHSPNLYHYSSLLNAYSYDGNYCKADELVEQMKSSGLVPNKVILTTLLKVYVRGGLFEKS 324

Query: 147 RKLLSELEALGYGENE 163
            KLL+ELEALGY E+E
Sbjct: 325 TKLLAELEALGYAEDE 340

[Close]
BLAST of CmoCh14G011150 vs. TAIR10
Match: AT1G10910.1 (AT1G10910.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 191.0 bits (484), Expect = 5.8e-49
Identity = 89/136 (65.44%), Postives = 116/136 (85.29%), Query Frame = 1 

Query: 27  MLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNE 86
           +L GCIKV++GY KA+EL+ E  +NG+ MDSV YGT++A+CAS+ R E+AE+F  QMK E
Sbjct: 207 LLAGCIKVKNGYPKAIELIGELPHNGIQMDSVMYGTVLAICASNGRSEEAENFIQQMKVE 266

Query: 87  GYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKS 146
           G+SPN++HY SLLN+YS  GDYKKADEL+ +MK  GLVPNKV++TTLLKVY++GGLF++S
Sbjct: 267 GHSPNIYHYSSLLNSYSWKGDYKKADELMTEMKSIGLVPNKVMMTTLLKVYIKGGLFDRS 326

Query: 147 RKLLSELEALGYGENE 163
           R+LLSELE+ GY ENE
Sbjct: 327 RELLSELESAGYAENE 342

[Close]
BLAST of CmoCh14G011150 vs. TAIR10
Match: AT4G19440.1 (AT4G19440.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-15
Identity = 39/117 (33.33%), Postives = 70/117 (59.83%), Query Frame = 1 

Query: 41  ALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNEGYSPNMFHYGSLLN 100
           ALEL ++ ++ G+  +S +Y +LI   +  +R+E+A+  F +M+ EG  PN+FHY +L++
Sbjct: 664 ALELREDMKHKGISPNSATYTSLIKGMSIISRVEEAKLLFEEMRMEGLEPNVFHYTALID 723

Query: 101 AYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELEALG 158
            Y   G   K + L+ +M  K + PNK+  T ++  Y R G   ++ +LL+E+   G
Sbjct: 724 GYGKLGQMVKVECLLREMHSKNVHPNKITYTVMIGGYARDGNVTEASRLLNEMREKG 780

[Close]
BLAST of CmoCh14G011150 vs. TAIR10
Match: AT5G61990.1 (AT5G61990.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 79.0 bits (193), Expect = 3.2e-15
Identity = 38/122 (31.15%), Postives = 70/122 (57.38%), Query Frame = 1 

Query: 40  KALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNEGYSPNMFHYGSLL 99
           +A    +   + G+  D+ +Y  L+     +++++DAE  F +M+ +G +P++F YG L+
Sbjct: 575 EACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFREMRGKGIAPDVFSYGVLI 634

Query: 100 NAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELEALGYG 159
           N +S  G+ +KA  + ++M  +GL PN +I   LL  + R G  EK+++LL E+   G  
Sbjct: 635 NGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLH 694

Query: 160 EN 162
            N
Sbjct: 695 PN 696

[Close]
BLAST of CmoCh14G011150 vs. TAIR10
Match: AT3G18110.1 (AT3G18110.1 Pentatricopeptide repeat (PPR) superfamily protein)

HSP 1 Score: 74.7 bits (182), Expect = 6.1e-14
Identity = 35/122 (28.69%), Postives = 72/122 (59.02%), Query Frame = 1 

Query: 41  ALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMKNEGYSPNMFHYGSLLN 100
           A+ELL   +N+GL  D+++Y TL++ C+  + L+ A   F  M+     P+++ Y ++++
Sbjct: 281 AVELLDMVRNSGLRPDAITYNTLLSACSRDSNLDGAVKVFEDMEAHRCQPDLWTYNAMIS 340

Query: 101 AYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFEKSRKLLSELEALGYGE 160
            Y   G   +A+ L  +++LKG  P+ V   +LL  + R    EK +++  +++ +G+G+
Sbjct: 341 VYGRCGLAAEAERLFMELELKGFFPDAVTYNSLLYAFARERNTEKVKEVYQQMQKMGFGK 400

Query: 161 NE 163
           +E
Sbjct: 401 DE 402

[Close]
BLAST of CmoCh14G011150 vs. TAIR10
Match: AT2G31400.1 (AT2G31400.1 genomes uncoupled 1)

HSP 1 Score: 73.2 bits (178), Expect = 1.8e-13
Identity = 41/146 (28.08%), Postives = 76/146 (52.05%), Query Frame = 1 

Query: 12  KENILKGRAKEHNANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHN 71
           KE  L+     +NA ++  C K    + +  +   E Q NG+  D +++ +L+AVC+   
Sbjct: 295 KEYGLRPNLVTYNA-VIDACGKGGMEFKQVAKFFDEMQRNGVQPDRITFNSLLAVCSRGG 354

Query: 72  RLEDAESFFNQMKNEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILT 131
             E A + F++M N     ++F Y +LL+A    G    A E++  M +K ++PN V  +
Sbjct: 355 LWEAARNLFDEMTNRRIEQDVFSYNTLLDAICKGGQMDLAFEILAQMPVKRIMPNVVSYS 414

Query: 132 TLLKVYVRGGLFEKSRKLLSELEALG 158
           T++  + + G F+++  L  E+  LG
Sbjct: 415 TVIDGFAKAGRFDEALNLFGEMRYLG 439

[Close]
BLAST of CmoCh14G011150 vs. NCBI nr
Match: gi|449446895|ref|XP_004141206.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 3.0e-63
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + MLTGCI+V+HGYAKA+ELLKE Q+NGLCMD VSYGTLIA+CASHNRLEDAE FFNQM+
Sbjct: 211 STMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVSYGTLIAICASHNRLEDAERFFNQMR 270

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
            EG+SPNMFHYGSLLNAYS++GDYKKADELIEDMKL GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 271 AEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFE 330

Query: 145 KSRKLLSELEALGYGENE 163
           KSRKLLSELE+LGYGENE
Sbjct: 331 KSRKLLSELESLGYGENE 348

[Close]
BLAST of CmoCh14G011150 vs. NCBI nr
Match: gi|700204612|gb|KGN59745.1| (hypothetical protein Csa_3G842670 [Cucumis sativus])

HSP 1 Score: 250.0 bits (637), Expect = 3.0e-63
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + MLTGCI+V+HGYAKA+ELLKE Q+NGLCMD VSYGTLIA+CASHNRLEDAE FFNQM+
Sbjct: 127 STMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVSYGTLIAICASHNRLEDAERFFNQMR 186

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
            EG+SPNMFHYGSLLNAYS++GDYKKADELIEDMKL GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 187 AEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFE 246

Query: 145 KSRKLLSELEALGYGENE 163
           KSRKLLSELE+LGYGENE
Sbjct: 247 KSRKLLSELESLGYGENE 264

[Close]
BLAST of CmoCh14G011150 vs. NCBI nr
Match: gi|659130042|ref|XP_008464970.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X2 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.9e-63
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + MLTGCI+V+HGYAKA+ELLKE Q+NGLCMD V YGTLIA+CASHNRLEDAESFFNQM+
Sbjct: 97  STMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVLYGTLIAICASHNRLEDAESFFNQMR 156

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
            EG+SPNMFHYGSLLNAYS++GDYKKADELIEDMKL GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 157 AEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFE 216

Query: 145 KSRKLLSELEALGYGENE 163
           KSRKLLSELE+LGYGENE
Sbjct: 217 KSRKLLSELESLGYGENE 234

[Close]
BLAST of CmoCh14G011150 vs. NCBI nr
Match: gi|659130040|ref|XP_008464969.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic isoform X1 [Cucumis melo])

HSP 1 Score: 249.6 bits (636), Expect = 3.9e-63
Identity = 121/138 (87.68%), Postives = 132/138 (95.65%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + MLTGCI+V+HGYAKA+ELLKE Q+NGLCMD V YGTLIA+CASHNRLEDAESFFNQM+
Sbjct: 211 STMLTGCIRVKHGYAKAMELLKELQDNGLCMDCVLYGTLIAICASHNRLEDAESFFNQMR 270

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
            EG+SPNMFHYGSLLNAYS++GDYKKADELIEDMKL GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 271 AEGHSPNMFHYGSLLNAYSINGDYKKADELIEDMKLTGLVPNKVILTTLLKVYVRGGLFE 330

Query: 145 KSRKLLSELEALGYGENE 163
           KSRKLLSELE+LGYGENE
Sbjct: 331 KSRKLLSELESLGYGENE 348

[Close]
BLAST of CmoCh14G011150 vs. NCBI nr
Match: gi|645223772|ref|XP_008218792.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Prunus mume])

HSP 1 Score: 209.9 bits (533), Expect = 3.4e-51
Identity = 100/138 (72.46%), Postives = 123/138 (89.13%), Query Frame = 1 

Query: 25  ANMLTGCIKVEHGYAKALELLKESQNNGLCMDSVSYGTLIAVCASHNRLEDAESFFNQMK 84
           + +L GC KV+HGY+KALEL++E Q N L MDSV YGTL+AVCAS+N+LE+AE +F QMK
Sbjct: 208 STLLAGCNKVKHGYSKALELVQELQRNELQMDSVIYGTLLAVCASNNKLEEAEGYFKQMK 267

Query: 85  NEGYSPNMFHYGSLLNAYSMSGDYKKADELIEDMKLKGLVPNKVILTTLLKVYVRGGLFE 144
           NEGY PN+FHY S+LNAYS+SG+YK+AD+L++DMK  GLVPNKVILTTLLKVYVRGGLFE
Sbjct: 268 NEGYLPNVFHYSSMLNAYSISGNYKEADDLVQDMKSAGLVPNKVILTTLLKVYVRGGLFE 327

Query: 145 KSRKLLSELEALGYGENE 163
           KSR+LL+ELE+LGY E+E
Sbjct: 328 KSRELLAELESLGYAEDE 345

The following BLAST results are available for this feature:
BLAST of CmoCh14G011150 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR31_ARATH1.0e-4765.44Pentatricopeptide repeat-containing protein At1g10910, chloroplastic OS=Arabidop... [more]
PP442_ARATH5.7e-1431.15Pentatricopeptide repeat-containing protein At5g61990, mitochondrial OS=Arabidop... [more]
PP325_ARATH5.7e-1433.33Pentatricopeptide repeat-containing protein At4g19440, chloroplastic OS=Arabidop... [more]
PP241_ARATH1.1e-1228.69Pentatricopeptide repeat-containing protein At3g18110, chloroplastic OS=Arabidop... [more]
PP178_ARATH3.1e-1228.08Pentatricopeptide repeat-containing protein At2g31400, chloroplastic OS=Arabidop... [more]
BLAST of CmoCh14G011150 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LCK2_CUCSA2.1e-6387.68Uncharacterized protein OS=Cucumis sativus GN=Csa_3G842670 PE=4 SV=1[more]
M5XK80_PRUPE2.4e-5172.46Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa002505mg PE=4 SV=1[more]
D7SZY3_VITVI1.0e-4971.01Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0034g01820 PE=4 SV=... [more]
B9GEW2_POPTR3.8e-4968.84Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s21880g PE=4 SV=2[more]
A0A061DZ53_THECC1.1e-4871.32Pentatricopeptide repeat (PPR) superfamily protein isoform 2 OS=Theobroma cacao ... [more]
BLAST of CmoCh14G011150 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G10910.15.8e-4965.44 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT4G19440.13.2e-1533.33 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G61990.13.2e-1531.15 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT3G18110.16.1e-1428.69 Pentatricopeptide repeat (PPR) superfamily protein[more]
AT2G31400.11.8e-1328.08 genomes uncoupled 1[more]
BLAST of CmoCh14G011150 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449446895|ref|XP_004141206.1|3.0e-6387.68PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
gi|700204612|gb|KGN59745.1|3.0e-6387.68hypothetical protein Csa_3G842670 [Cucumis sativus][more]
gi|659130042|ref|XP_008464970.1|3.9e-6387.68PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
gi|659130040|ref|XP_008464969.1|3.9e-6387.68PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
gi|645223772|ref|XP_008218792.1|3.4e-5172.46PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic ... [more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011150.1CmoCh14G011150.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 58..91
score: 8.4E-9coord: 95..126
score: 2.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 20..55
score: 5.086coord: 126..160
score: 8.079coord: 56..90
score: 12.156coord: 91..125
score: 11
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 38..155
score: 3.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 27..162
score: 4.9
NoneNo IPR availablePANTHERPTHR24015:SF367SUBFAMILY NOT NAMEDcoord: 27..162
score: 4.9

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G011150Cucsa.340390Cucumber (Gy14) v1cgycmoB0929
CmoCh14G011150Lsi03G013120Bottle gourd (USVL1VR-Ls)cmolsiB231
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G011150Silver-seed gourdcarcmoB0567
CmoCh14G011150Cucumber (Chinese Long) v3cmocucB0277
CmoCh14G011150Watermelon (97103) v2cmowmbB229
CmoCh14G011150Watermelon (97103) v2cmowmbB231
CmoCh14G011150Wax gourdcmowgoB0279
CmoCh14G011150Wax gourdcmowgoB0291
CmoCh14G011150Cucurbita maxima (Rimu)cmacmoB245
CmoCh14G011150Wild cucumber (PI 183967)cmocpiB236
CmoCh14G011150Cucumber (Chinese Long) v2cmocuB233
CmoCh14G011150Melon (DHL92) v3.5.1cmomeB213
CmoCh14G011150Watermelon (Charleston Gray)cmowcgB206
CmoCh14G011150Watermelon (Charleston Gray)cmowcgB208
CmoCh14G011150Watermelon (97103) v1cmowmB213
CmoCh14G011150Watermelon (97103) v1cmowmB215
CmoCh14G011150Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G011150Bottle gourd (USVL1VR-Ls)cmolsiB228
CmoCh14G011150Cucumber (Gy14) v2cgybcmoB286
CmoCh14G011150Melon (DHL92) v3.6.1cmomedB242