CmoCh14G011020 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G011020
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRibulose bisphosphate carboxylase large chain (4.1.1.39)
LocationCmo_Chr14 : 7279798 .. 7286869 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCCCTGCCTCGCTGCGGGTCAGCACCTCTGAAAGAAAGGGAGGACTTCATTTAGTGACTCCGCGATCGCCCTTTGAACGATCAGAATAAGGTAAAGCTTGAAGATAAGTTTTGTACTCTATTAATTTCTCAGTCCCTCTAGTCGGGTGGGCTAGGCTGGGCTTTCGACCGGATCCCCCTAAAAACCGTACGTGCGAGTCTCCCCACATGTGGCTCACGCCATTCGATGTGGCCCAGCATTCATTCGCAAATCAATCCTGTAGTGAAATTAAGACTTCTTGACCTCGGAAGCTAATTCGCGTGTAGGCAGCTCTCTGTCTGTCGTACCGTTGACTCGAGATCTATTCATTGAATTGACTTTAGGCTCGCTCCCTCCCTCTTTTTCCAAGAATTGATGCACTTCCCTTTACTTCATAGGTTCTTTGATTGATAATAGGGGAAAAGCCTTTGATTTCTGTCAAATGACCAGGCCTCCCCTTGCTCTTCCACCGTCCGGGCTACCTTTTCTGCCTATGCTATGCTCCCCCGGCACAGGCCTACCACGCTTCGCACCTGCGGCGTTTTCGCCAGACGGTCTTTGTCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCAGGTTGCCCTTCGCTGCTGTGTTCTGTTAGGCTATGGATTATAGGAACAAATGTAGTTGAATGAGACTGCAGGCAGGTTACACGTTCCACCGTGCCGAGATGCGAGTGAGGTGCAGGTGGTGATGATCACCCTGGGGTATGCGCGAGAGCCCTTGACAAGCACTCCAGGACCTGCCAACACTCATGAAAACCCAGATCGGTCCTCCTACGACCAGAGGTGTGGATAACGAGGCTACCTTCACAACCTTCTCCCTTTTGTCCCTATCTTGTAGTAAGGTAGGGCGGTTCGCTTGAGTAGCTCAACCGCCCCCCGGTGCTCATGATGCGCTACGGAGGGAACCTCCACCGTGTCAAGGGACCAAGCAGGGCATAGCTAGCGGCATAGGAGCCGACTCTGCGTCAGCGGCTTCGTGCTGCACTGGAGTAATCCAATATGTGGTTCCGCACGTTCCACCACTTCTCCGTTCATTTTCAATACTGATCATGAAACACCATGAGCAGCAGGATGTTGAGGTTCGGAATTCGAAGTGAAATTTGTTATTTGCCTCTTACTAGTCGTCGTGGGAAAAAAAGGCAGAAAGAAGAAAGATAATATTCCCTCTGAACTTGGACAATAATACCAGTACAAAAAATGCATCTCCTGAACCTTAGCAGCAGCTGAAAGAAAAGAAATTCTATCTACATATAACTGTAAAAGTTCGTAAGACCTTTTTCCCTAAGGAAAGTAGCTGAAAGAAAAGAAATTCTATCTACATATAACTGTAAAAGTTTGTAAGATCTTTTTCCCTAAGGAAAGCTGCTTCAATCAAATATTTTGTATCCAGCATAGGGGTAAAACAGTAAAATCATTTTTTCCCTAATAGCGGGAGCTGAAATCAAATCTTTTTTTATCCCCATTTAATTGTAAAACATTAGAATTGAGGTCTTTTGGGCCGAGGTAATTCATAAGTCAATCCTAAAGATGAATGAGAGTTAACTATCAGTCAATCCTCAACTTTCTCTTCATTCTCCTTTAAAGACGGAGATTAGAGTGGTCCTTTCTCTCCTCCACCCATCCGCGGGTTCAATATCCATCTCCGCAGATATTTTCTGATCGGAGACATAACTCTGCCTGTGACACTGGAATCTCTTTCTGACATTTCCGGAAAGTGAACGGACAGCAGCCCTTCCCCCTTCTCACAATGTTACCGAACTTGCTAAAGAATCAAACAAAGTGTGAATGGAACTTAGAAGTGCTTCATGGGGTCGACGTGGGGAACTTCCACAGGTTCTGGAGCCAGCGGGTTCTGTGAATGAACTCCCTCTTACGGTTAAAAAAGAAAGTAGTTAACCACCTCGAAGAAATCCAAAGTACGACCAAACTGAGAGTGAGTAGCATAAAGTCAAGAAAGATAGATTTGTGAATGAGAAAGATTTTCTATCTTCATAATAGGAATCCATGGGATTATTTCAAATGGCTCAATAGGACTGTGTGCAGTTACACTAACCTAGTCGACGGGTGAGGTTCTAGAGGGACCCACTTCTTTAGCTATAGTAAGTACTTCTGTTTTAGTAAGTTCAAAAAACTTCAGTCTTGTCCCATCATGCCCCACATGACTCTCCGAACAATAGAGTCCTTTCCCACTATTTGCCTTCAGGATCTATTGAAGAGTTTCCTAATGATGCACAATAAAAGATCTATTATATATATAAGTGAAAAACATAATCTCGGACCGAGTAAAACAACAAACTTGATAAAAACTTGGTTCTCTCGCCCGAATTGGAGACAAAATGAAAAGCTTGCATTTTCTTTGATTTCTTCTTTGACTACTCCGCTCATCCCCAAAAATGAAGAAAGACTTGTCGGAGCCGGGTTGGTTGGTCCGAAAAGGATAGGAAAAGGGGAAGGGAAGAGGTCTGTAGAGTCTTGACTTTCAATTTCAAGAGAAAGAAATAATATGCTTTACTGAGTGAAAGACTGAAATGACCAACAAAATAGGGAGAGGAGTCAATTAATTAGCTACTAAACCTATTTCCCTTGTGAAAGACAGAAATGACCAACAAAATAGGGAGAGGCGAAGCAAGCGAAGTAGTTCTGTCTCATGACTCTTGAGTTTAGGCTTGACTTCCTTAATCCAATAACTTCTGGTAATATCGGAAAAGGAGCAGTTAAGTTTGATTCTCCCTATCATTGTAAATGAGAATGCATCGAGAGTCTTCTTTTACAGTTAGTTCTGGAGAGAGAGTCCATGAATTAGCCGCTTTATCGAGTTCAATAAGGGAAGGGAAGTAGTTATTGATAATTCTTCTTCTTGAGTATTGATCTTTTACAGTTCAGGGAGAGGAAACGAACAACAAGAACTGCTGGGAAGAGATAGAGGCTCAGTAGTTCAGTCGAATGAATCAAGCTTCAGTCTTTACTTGATGAATAAGGAGGTGAAGGAGCGAAGCCAGCCGGCCAGTTCCTTCCAACCCAGCCAGTTCCTTCCCTTCCTATTCTGTCTCATTCTTGCTTCTTTCTTACAGGAGAGTGAGTGAAAGAATCATCCTCCATCTAGTTTACCTTGTTCAATCAGGTTCAGAAGAAGGAATAAGGAAAGAAAGGAGTGTTTAAAGTCGAGTCAATTCATTAGCTGCTTTACCGGGTGATAGTCAAACCCCAGCCAGTTCAAGAATAGTTAGTTCAACCCTAGTGAAAGAAGTCAGAGAACCTAGATTAAAGCTATCTTGTGATCATAATTGCATTGCTTTAGAGTGAAAGAAAGGATCAGATCTAGAATGAATAAGGAGTCTTTATAAGGGAGAGTCCATTCAGATTCAATCTCGAACCTTTATCAATCTCCTTCACCTGTCCTAAGGTAAAGCAATTCCATTGCCGGAGCTACTGAATGAAACCCTGAGACTACTGAACCACACCTTCTTTCACTCTTTCTTTCACAAGGGCCAAAAGATGAAATCAAGCTTAATGAGAGTGAACCTATCCTGAACTGGACGTAAAGAGTAAACAAGCAAGAATGATCCTACCTATCCTTCGCTACTTCCTGAACTCAATCACTAGAAGTCAAGACGAAACTAGAAGAGAGACTCTCAATCAAGCTCCTACTGAACTGTAAAAGAAGAAGTTAATGAGACTGAACCTCGGCTTCGCGCCTTTCCTCTTCATGATCCGATTCCTTCAGGAACAGTAAACTGGGAATCTTAGCTCTGATCTTTCTCCTGATTGAACAAGATAAACTCAATCACTTGTCCCTACCCTATGTTCTTCTTTGTAAACTCACTCTGCCTTCTTGAACAACTCTCCCTATCGGTTGGTTTCTACGCTTAGCTTATTCGCCTCTACTCTAACCCTCGGGCTCACACACAATTCCATTGCCTGAACCTCTACAGGAAGTCAAGCCGAAACAAGCAAGAATGAGAGAGACTGATTTCACTCTTTCCCAAGGTAAATAGGTGTTCAGTAGCTCTTTGTTTGATTGAACGAACTGTAAAGCTGAAAGATGAATGGAATGAGAGTGAGTAAATTCATTAATTAGCTATTGAACCCGAACCTGATTGAATGAATGAGTTTACAGTGAAAGAAGAAGAATCCTTTATTCCTTTACAGTTCAAGAAAGTGTTGAAAGGAAAGACGGGAGATAAGACAAAGACTCCTGATCCTGTAAAGACCATTGATGATTTAGTTTCTTCTGACTTTCCCGGGATTTTCGTTCATTTCTCTTTTTCACTAACAAAAGCTGCTTCAATTAATTAGAGTTGATGCTTTACGTTTCATTCTCTCTTTTTCACTAACAAAAGCTGCTGAAATTAATTAGAGTTTTTACTTTCCGGGGATTTAGGGCCATTTTCCCTTATTGAAGGAGGTAACATAGTAGTTAGTCTTTCTCCGTAACCTCCGCCTTCACTCCTCTTTCTTTATTCAAACAAAGACAAGGTAAACTCATGAACTACTTCACGAACCAGATTGAACTGTAAGAAAAGGGATGAATTCGACTTAACTACTTCCTCTGAACCTATACAACGAGGTAAAGCAATTACATTGCCTGAACCAACAAGGGAAAAGAAAAAGAGAAATACGTGAGATTCATTCGACTGAACTGCCCCTCTCCCTCGCGGTCTCGCTCTTTCACCCCTCGTAAACTACCTTCTTCTCTACTTACTCCTAAACCTCTATTCCCTTCCCTTTCCAGTCGAGTAAATGAATGCAAGAATTAGAAGAAAATGAAAGATCAATAGTTCAACCAACGCTTGTTTACAAGAGAAAAAAAGATAAGAGAATGAAAGAAGGGAGACAAGACAAAGACTCCTGATCCTCCTTCTCCTATTGATGGAACTCTGGAACTGATATGATATGCCGTTCGCTACTTCACCTTTCGAGAATGCCAGAAGGGAAAGAGGAAGAAAGAAACATTAATGATCCTGAACTGTAACCGATAGAGAAAGAAGGGAGAGTGGAGAGTCTCGACTCAACATTCATTCTCCTTCACGGGAAGTCAATCCTCAATTCATTAGCGGCTTTACGGTCGGTAAAAGACTCAAGAAGAATTCTCCTGACCCTGAACCGATATTCCCTATTTTTTCGTTCATTTAACTCTTTTACATAGGCTGTATGAGAATCAGGAAAAGCTCCTCTCCCTCGCGGTCGAGCTGTTTCACTCCTTCCCCTATCGGTTTGTCTCATTGCTGCATTTCACTCCTTTTCCTATTCCTATGGATTCTTTCTCCTGAATTGGACCTGAACCTGATTTCACAAGGTCAAATCAAATGAAAGGATGTAAGAGAAGAAGAAAGATTAGAACTTGACACGTGGCCGGTCTCTCTCTCATCTCTTCTTTCCTTCACTTTCTTTCACTCCTGAACCTGAACAACCTGATTTGACTCATGAACCTAGTAAACAAGGATTTAACTATTCGATCACTCGTTAAAGCTATATTTTATAATCTTCTTCTTCTTTCTTTCCCCTTATTATGTTACTATTCAATTCTGAACCTCTTCTTTCTTTATGGTCTCATTGGTTCGCCCATTCACCTGAACCTTGTAACCCTATTCAGTTAAAGAGGAAGTGGTTGAGACGAGAGCTCCTTCCCCGATATTCCCCCTTGCTTGATTTCCAGAGGTAAAGGAGCTTGGGTTGGATGATAGATAAGAACCTTTTCTTTGACTTTATTCCTTTCTGTTCTAGTTCTTTCCCTTCAAAGACTCGGTCGGTAAACAGGAGGATGATTCTTTCACTCTTTTACTCGGTAAAGCTAGCACTAAGAAAAAGTCTGCGTTCTATTCCTTGTGGTCTCATTGCTGCGCTCCTCTCCCCGATTCCTTGTTTGACTGCTTGCTTCGTGCTTCTTCTCGTTTTCGTTGCTGCGCTCCTCTCCCTCCCGGCCCGATCTATCGAGTTGCTTCGCTTCGCTCCTCTCCCTTCTTTCAAAGACTTACAACTCTCATTCATCTTTCATTTGCAGCTCCCTTTTATAGTAAACTCGGATAGTTAAAGGTTTTTGGTTTCTTCTTTCTTTGTTTCCAGTTCAATCAGATAATAGAGTCAAAGGTGTAGGTCAGGTAATATTGGTTCAGGAAGTAGCTCAGGTCATATCGGTCGCTTCTCTTTCATTCTCTGATTCTTCTTCTTTCTATTTCTATAATTGTAACAAGTATAGGTTCAGTTGCTGCAAGGAATGGACTCTGCCTTCTAACAGTGCAGTCTCACCTTTTCTTTCATCTTTCGTCTTGATCCTTATGATTTATTAAGGTAAAGATTAATCTTTCATCTTAGTTTACAGTTCAATCCGGTCAGGTAATATTGGTTCTGGTTCAGCAGCTCTTTTTCGGTGGATTCGATTCTTCTTTTCTTTCTTTTTTCTTTCAATATTTTGAGGCAAAAGATTACAAACTTGAAAAAGGATTGAGTTGCGCCATACAAGAGTAAACAATAATGCTTTGGTGAATCAAATACCCTGGTGTCTAATAACGAACCATTCTTCTTTCTAATATTAATTGAGAATTTTGTGAAAGGATTCCTATCCTATACCTATAAAAGATTGAATTAACCCCTAATTCATGTCGAGTAGACCTTGTTGTTGCGAGAATGATGAATGAATGAGTTGTAGGGAGCGAAGGGCCTTATGTCACCACAAACTGAGACTAAAGCAGCAAGTGTTGGATTCAAAGCTGGTGTTAAAGTCAAGATTCTACAGTCACTTATGATACTCCTGAATATGAAACCAAAGATACTGAGATCTTGGCTGGGAGCATTCCGAGTAACTCCTCCACCGGGAATTCCAAGGAAGCTGGGGTCGTTGTAGCTGTTGAATCTTCTACTAGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTGTCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAG

mRNA sequence

ATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCCCTGCCTCGCTGCGGGCCTCCCCTTGCTCTTCCACCGTCCGGGCTACCTTTTCTGCCTATGCTATGCTCCCCCGGCACAGGCCTACCACGCTTCGCACCTGCGGCGTTTTCGCCAGACGGTCTTTGTCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCAGGCAGGTTACACGTTCCACCGTGCCGAGATGCGAGTGAGGTGCAGGTGGTGATGATCACCCTGGGGTATGCGCGAGAGCCCTTGACAAGCACTCCAGGACCTGCCAACACTCATGAAAACCCAGATCGGTCCTCCTACGACCAGAGTTCAGGGAGAGGAAACGAACAACAAGAACTGCTGGGAAGAGATAGAGGCTCAGTAGTTCAGTCGAATGAATCAAGCTTCAGTCTTTACTTGATGAATAAGGAGGTGAAGGAGCGAAGCCAGCCGGCCAGTTCCTTCCAACCCAGCCAGTTCCTTCCCTTCCTATTCTGTCTCATTCTTGCTTCTTTCTTACAGGAGATCACTTATGATACTCCTGAATATGAAACCAAAGATACTGAGATCTTGGCTGGGAGCATTCCGAGTAACTCCTCCACCGGGAATTCCAAGGAAGCTGGGGTCGTTGTAGCTGTTGAATCTTCTACTAGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTGTCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAG

Coding sequence (CDS)

ATGCTGTTGTCGTCGCCATATTCCATATGTCACTTAGTCATCCCTGCCTCGCTGCGGGCCTCCCCTTGCTCTTCCACCGTCCGGGCTACCTTTTCTGCCTATGCTATGCTCCCCCGGCACAGGCCTACCACGCTTCGCACCTGCGGCGTTTTCGCCAGACGGTCTTTGTCAGTAGTGCCATCCTCCCCGCTGGCTGTATGGGCAGGCAGGTTACACGTTCCACCGTGCCGAGATGCGAGTGAGGTGCAGGTGGTGATGATCACCCTGGGGTATGCGCGAGAGCCCTTGACAAGCACTCCAGGACCTGCCAACACTCATGAAAACCCAGATCGGTCCTCCTACGACCAGAGTTCAGGGAGAGGAAACGAACAACAAGAACTGCTGGGAAGAGATAGAGGCTCAGTAGTTCAGTCGAATGAATCAAGCTTCAGTCTTTACTTGATGAATAAGGAGGTGAAGGAGCGAAGCCAGCCGGCCAGTTCCTTCCAACCCAGCCAGTTCCTTCCCTTCCTATTCTGTCTCATTCTTGCTTCTTTCTTACAGGAGATCACTTATGATACTCCTGAATATGAAACCAAAGATACTGAGATCTTGGCTGGGAGCATTCCGAGTAACTCCTCCACCGGGAATTCCAAGGAAGCTGGGGTCGTTGTAGCTGTTGAATCTTCTACTAGTACATGGACAACTGACCGATGGGCTTACCAACCAGTCTTGATCCTTACAAAGGACGATGCTATGGAATTATGGAATCGAGCCTGTCTGTTCCTGGAGAAGAAAATCAATATATTGCTTATCTAG
Homology
[Close]
BLAST of CmoCh14G011020 vs. TrEMBL
Match: A0A075VUZ3_CAPAN (Uncharacterized protein OS=Capsicum annuum GN=orf166b PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.6e-22
Identity = 74/135 (54.81%), Postives = 76/135 (56.30%), Query Frame = 1 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L  P++  ASP SSTVRA F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 34  LPFPSNDPASPGSSTVRAPFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 93

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  VP C    EVQVVMIT GYA  PLT TP PAN 
Sbjct: 94  SLLRSLLLWIKGTNVVEWNSRRVTRSTVPRC----EVQVVMITPGYALAPLTGTPEPANA 153

[Close]
BLAST of CmoCh14G011020 vs. TrEMBL
Match: G2XLM9_BETMA (Uncharacterized protein OS=Beta macrocarpa GN=orf145d PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 58/100 (58.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 16  MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSVRLWIRGTNVVKWDSKRVT 75

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENP 110
           R  VP C    EVQVVMIT GYA  PLT TPGPAN  ENP
Sbjct: 76  RSTVPRC----EVQVVMITPGYALAPLTGTPGPANARENP 111

[Close]
BLAST of CmoCh14G011020 vs. TrEMBL
Match: E6ZDW8_BETVM (Putative uncharacterized protein orf145d OS=Beta vulgaris subsp. maritima GN=orf145d PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 3.5e-17
Identity = 58/100 (58.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 16  MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSVRLWIRGTNVVKWDSKRVT 75

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENP 110
           R  VP C    EVQVVMIT GYA  PLT TPGPAN  ENP
Sbjct: 76  RSTVPRC----EVQVVMITPGYALAPLTGTPGPANARENP 111

[Close]
BLAST of CmoCh14G011020 vs. TrEMBL
Match: A0A096XFB0_PANGI (Orf109 OS=Panax ginseng GN=orf109 PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-17
Identity = 61/111 (54.95%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 1   MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSVRLWITGTNVIEWNSRRVT 60

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENPDRSSYDQSSGR 121
           R  VP C    EVQVVMIT GYA  PLT TP PAN  ENP RS    S  R
Sbjct: 61  RSTVPRC----EVQVVMITPGYALAPLTGTPEPANARENPGRSVLHSSDRR 107

[Close]
BLAST of CmoCh14G011020 vs. TrEMBL
Match: Q5M9S2_TOBAC (Uncharacterized protein OS=Nicotiana tabacum GN=orf109c PE=4 SV=1)

HSP 1 Score: 96.7 bits (239), Expect = 4.6e-17
Identity = 61/111 (54.95%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 1   MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSFKLWIKGTNVVEWNSRRVT 60

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENPDRSSYDQSSGR 121
           R  VP C    EVQVVMIT GYA  PLT TP PAN  ENP RS    S  R
Sbjct: 61  RSTVPRC----EVQVVMITPGYALAPLTGTPEPANARENPGRSVLHSSDRR 107

[Close]
BLAST of CmoCh14G011020 vs. TAIR10
Match: ATCG00490.1 (ATCG00490.1 ribulose-bisphosphate carboxylases)

HSP 1 Score: 50.1 bits (118), Expect = 2.5e-06
Identity = 27/48 (56.25%), Postives = 32/48 (66.67%), Query Frame = 1 

Query: 182 EITYDTPEYETKDTEILAGSIPSNSSTGNSKEAGVVVAVESSTSTWTT 230
           ++TY TPEYETKDT+ILA    +       +EAG  VA ESST TWTT
Sbjct: 21  KLTYYTPEYETKDTDILAAFRVTPQPGVPPEEAGAAVAAESSTGTWTT 68

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: gi|667751897|gb|AIG89984.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 114.8 bits (286), Expect = 2.3e-22
Identity = 74/135 (54.81%), Postives = 76/135 (56.30%), Query Frame = 1 

Query: 12  LVIPASLRASPCSSTVRATFSAYAMLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-- 71
           L  P++  ASP SSTVRA F  Y MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG  
Sbjct: 34  LPFPSNDPASPGSSTVRAPFPPYGMLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCP 93

Query: 72  ------------------------RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANT 121
                                   R  VP C    EVQVVMIT GYA  PLT TP PAN 
Sbjct: 94  SLLRSLLLWIKGTNVVEWNSRRVTRSTVPRC----EVQVVMITPGYALAPLTGTPEPANA 153

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: gi|323435034|ref|YP_004222249.1| (hypothetical protein BevumaM_p010 (mitochondrion) [Beta vulgaris subsp. maritima])

HSP 1 Score: 97.1 bits (240), Expect = 5.1e-17
Identity = 58/100 (58.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 16  MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSVRLWIRGTNVVKWDSKRVT 75

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENP 110
           R  VP C    EVQVVMIT GYA  PLT TPGPAN  ENP
Sbjct: 76  RSTVPRC----EVQVVMITPGYALAPLTGTPGPANARENP 111

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: gi|675895162|ref|YP_009049636.1| (hypothetical protein (mitochondrion) [Capsicum annuum])

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 61/111 (54.95%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 1   MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSLLLWIKGTNVVEWNSRRVT 60

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENPDRSSYDQSSGR 121
           R  VP C    EVQVVMIT GYA  PLT TP PAN  ENP RS    S  R
Sbjct: 61  RSTVPRC----EVQVVMITPGYALAPLTGTPEPANARENPGRSVLHSSDRR 107

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: gi|57014019|ref|YP_173490.1| (hypothetical protein NitaMp153 [Nicotiana tabacum])

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 61/111 (54.95%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 1   MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSFKLWIKGTNVVEWNSRRVT 60

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENPDRSSYDQSSGR 121
           R  VP C    EVQVVMIT GYA  PLT TP PAN  ENP RS    S  R
Sbjct: 61  RSTVPRC----EVQVVMITPGYALAPLTGTPEPANARENPGRSVLHSSDRR 107

[Close]
BLAST of CmoCh14G011020 vs. NCBI nr
Match: gi|586829794|gb|AHJ81034.1| (orf109 (mitochondrion) [Panax ginseng])

HSP 1 Score: 96.7 bits (239), Expect = 6.6e-17
Identity = 61/111 (54.95%), Postives = 61/111 (54.95%), Query Frame = 1 

Query: 36  MLPRHRPTTLRTCGVFARRSLSVVPSSPLAVWAG-------------------------- 95
           MLPR RPTTLR CGVFARRSL VVPSSPLAVWAG                          
Sbjct: 1   MLPRRRPTTLRACGVFARRSLPVVPSSPLAVWAGCPSLLRSVRLWITGTNVIEWNSRRVT 60

Query: 96  RLHVPPCRDASEVQVVMITLGYAREPLTSTPGPANTHENPDRSSYDQSSGR 121
           R  VP C    EVQVVMIT GYA  PLT TP PAN  ENP RS    S  R
Sbjct: 61  RSTVPRC----EVQVVMITPGYALAPLTGTPEPANARENPGRSVLHSSDRR 107

The following BLAST results are available for this feature:
BLAST of CmoCh14G011020 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G011020 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A075VUZ3_CAPAN1.6e-2254.81Uncharacterized protein OS=Capsicum annuum GN=orf166b PE=4 SV=1[more]
G2XLM9_BETMA3.5e-1758.00Uncharacterized protein OS=Beta macrocarpa GN=orf145d PE=4 SV=1[more]
E6ZDW8_BETVM3.5e-1758.00Putative uncharacterized protein orf145d OS=Beta vulgaris subsp. maritima GN=orf... [more]
A0A096XFB0_PANGI4.6e-1754.95Orf109 OS=Panax ginseng GN=orf109 PE=4 SV=1[more]
Q5M9S2_TOBAC4.6e-1754.95Uncharacterized protein OS=Nicotiana tabacum GN=orf109c PE=4 SV=1[more]
BLAST of CmoCh14G011020 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00490.12.5e-0656.25ATCG00490.1 ribulose-bisphosphate carboxylases[more]
BLAST of CmoCh14G011020 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|667751897|gb|AIG89984.1|2.3e-2254.81hypothetical protein (mitochondrion) [Capsicum annuum][more]
gi|323435034|ref|YP_004222249.1|5.1e-1758.00hypothetical protein BevumaM_p010 (mitochondrion) [Beta vulgaris subsp. maritima... [more]
gi|675895162|ref|YP_009049636.1|6.6e-1754.95hypothetical protein (mitochondrion) [Capsicum annuum][more]
gi|57014019|ref|YP_173490.1|6.6e-1754.95hypothetical protein NitaMp153 [Nicotiana tabacum][more]
gi|586829794|gb|AHJ81034.1|6.6e-1754.95orf109 (mitochondrion) [Panax ginseng][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR017443RuBisCO_lsu_fd_N
Vocabulary: Biological Process
TermDefinition
GO:0015977carbon fixation
Vocabulary: Molecular Function
TermDefinition
GO:0016984ribulose-bisphosphate carboxylase activity
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015977 carbon fixation
biological_process GO:0046487 glyoxylate metabolic process
cellular_component GO:0009573 chloroplast ribulose bisphosphate carboxylase complex
molecular_function GO:0016984 ribulose-bisphosphate carboxylase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G011020.1CmoCh14G011020.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalGENE3DG3DSA:3.30.70.150coord: 184..229
score: 8.
IPR017443Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminalunknownSSF54966RuBisCO, large subunit, small (N-terminal) domaincoord: 182..232
score: 4.4

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G011020Watermelon (Charleston Gray)cmowcgB206
CmoCh14G011020Watermelon (97103) v1cmowmB213
CmoCh14G011020Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G011020Bottle gourd (USVL1VR-Ls)cmolsiB228
CmoCh14G011020Watermelon (97103) v2cmowmbB229
CmoCh14G011020Wax gourdcmowgoB0279