CmoCh14G010830 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G010830
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Chromatin assembly factor 1 subunit A, putative
Location	Cmo_Chr14 : 6110506 .. 6111255 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATGAAGGCGCTGAGTGTTCAGAATATGGTTTCATGGTCTTGTTTCCATTTGGCCAAGGCTACTACTACTACTGACATCCCCGATCCCTCTGCTAACATCAAGCTCATTCTTTCCCACGGCGTTGTGAGAGTCTACCACCGACCCATCTCTGTCTCTGAGATTCTGCTTGAGTTCCCTAAGCACTTAGTTTGCCGATCCGACGCCTTTTACATCGGCCAGAAAATCCCTCATCTCTCCGAACACGACTTTCTCCAACTCGGCCATAAGTACTTCCTCCTCCCCAAGCCCTTCTTCCACTCTGTTCTCTCTTTCGTCTCAATCGCCTCTTTCTTCTCTCCTCCCAACAAACCAAACCGTTTCCACACCAATGCCGCCGCCTGCCTCCACCCTTTCGACCTCCAACGAACCCCCTCCGGCTGCCTCCGAATCCGAGTCTCCGACGAGTTCATCTCTCAGTTACTCGAACAGGGGAATCCGAAACCCCTGCCTTCACCGCCGTTGCCGCAAGGAAAAATCTGCACCACCCCCCAGTTGGCCAAGGAATACACCCAGCTGGTCCGAGCCCGGCGATGGAAGCCGAAGCTGGAGACGATTGAAGAGACCAAAAAGAAAGGCGGGATTTCTCCATTTGGGTTGAAGAAGGGAAACCCATTTCCTTCTCCACCGCCACGATCGTCCTACTCACTTCACCATCTCCGTGCCATTCACTACAAGCCGAAGATCCGCATAAAATCCCGGGATTAA

mRNA sequence

ATGGGGATGAAGGCGCTGAGTGTTCAGAATATGGTTTCATGGTCTTGTTTCCATTTGGCCAAGGCTACTACTACTACTGACATCCCCGATCCCTCTGCTAACATCAAGCTCATTCTTTCCCACGGCGTTGTGAGAGTCTACCACCGACCCATCTCTGTCTCTGAGATTCTGCTTGAGTTCCCTAAGCACTTAGTTTGCCGATCCGACGCCTTTTACATCGGCCAGAAAATCCCTCATCTCTCCGAACACGACTTTCTCCAACTCGGCCATAAGTACTTCCTCCTCCCCAAGCCCTTCTTCCACTCTGTTCTCTCTTTCGTCTCAATCGCCTCTTTCTTCTCTCCTCCCAACAAACCAAACCGTTTCCACACCAATGCCGCCGCCTGCCTCCACCCTTTCGACCTCCAACGAACCCCCTCCGGCTGCCTCCGAATCCGAGTCTCCGACGAGTTCATCTCTCAGTTACTCGAACAGGGGAATCCGAAACCCCTGCCTTCACCGCCGTTGCCGCAAGGAAAAATCTGCACCACCCCCCAGTTGGCCAAGGAATACACCCAGCTGGTCCGAGCCCGGCGATGGAAGCCGAAGCTGGAGACGATTGAAGAGACCAAAAAGAAAGGCGGGATTTCTCCATTTGGGTTGAAGAAGGGAAACCCATTTCCTTCTCCACCGCCACGATCGTCCTACTCACTTCACCATCTCCGTGCCATTCACTACAAGCCGAAGATCCGCATAAAATCCCGGGATTAA

Coding sequence (CDS)

ATGGGGATGAAGGCGCTGAGTGTTCAGAATATGGTTTCATGGTCTTGTTTCCATTTGGCCAAGGCTACTACTACTACTGACATCCCCGATCCCTCTGCTAACATCAAGCTCATTCTTTCCCACGGCGTTGTGAGAGTCTACCACCGACCCATCTCTGTCTCTGAGATTCTGCTTGAGTTCCCTAAGCACTTAGTTTGCCGATCCGACGCCTTTTACATCGGCCAGAAAATCCCTCATCTCTCCGAACACGACTTTCTCCAACTCGGCCATAAGTACTTCCTCCTCCCCAAGCCCTTCTTCCACTCTGTTCTCTCTTTCGTCTCAATCGCCTCTTTCTTCTCTCCTCCCAACAAACCAAACCGTTTCCACACCAATGCCGCCGCCTGCCTCCACCCTTTCGACCTCCAACGAACCCCCTCCGGCTGCCTCCGAATCCGAGTCTCCGACGAGTTCATCTCTCAGTTACTCGAACAGGGGAATCCGAAACCCCTGCCTTCACCGCCGTTGCCGCAAGGAAAAATCTGCACCACCCCCCAGTTGGCCAAGGAATACACCCAGCTGGTCCGAGCCCGGCGATGGAAGCCGAAGCTGGAGACGATTGAAGAGACCAAAAAGAAAGGCGGGATTTCTCCATTTGGGTTGAAGAAGGGAAACCCATTTCCTTCTCCACCGCCACGATCGTCCTACTCACTTCACCATCTCCGTGCCATTCACTACAAGCCGAAGATCCGCATAAAATCCCGGGATTAA

Homology

[Close]

BLAST of CmoCh14G010830 vs. TrEMBL
Match: A0A0A0LCN9_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846010 PE=4 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.3e-95
Identity = 193/257 (75.10%), Postives = 207/257 (80.54%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTTDIPDP-SANIKLILSHGVVRVYHRPISVSEILLE 60
           MG+K LSVQNMVSWSCFHL K       P   S NIKLI S GVVR+YHRPI VSE+LLE
Sbjct: 1   MGIKVLSVQNMVSWSCFHLMKNAIPPPPPSSDSTNIKLIHSDGVVRIYHRPIYVSEVLLE 60

Query: 61  FPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFSPP--N 120
           FPKHLVCRSD+FYIGQKIP LS+ D LQLGHKYFLLP  FFHSVLSFV+IASFFS    N
Sbjct: 61  FPKHLVCRSDSFYIGQKIPPLSDQDLLQLGHKYFLLPTSFFHSVLSFVTIASFFSSSNNN 120

Query: 121 KPNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQG-NPKPLP---SPPLPQGK 180
             NRF  NAAA   PFDLQRTPSGCL+IRVSD+FISQLLEQG NPKPLP   SP LP GK
Sbjct: 121 NKNRFINNAAASHCPFDLQRTPSGCLKIRVSDDFISQLLEQGNNPKPLPPQQSPSLPLGK 180

Query: 181 ICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPPRSSYSLHH 240
           ICTTPQLAK+YTQLVR R+WKPKLETI+ET+KK  IS FGLKK NPFPS P RS Y LHH
Sbjct: 181 ICTTPQLAKDYTQLVRTRKWKPKLETIKETQKK-RISSFGLKKANPFPSTPIRSPYPLHH 240

Query: 241 LRAIH--YKPKIRIKSR 249
           LR+IH  YK KIRIK+R
Sbjct: 241 LRSIHFAYKHKIRIKAR 256

[Close]

BLAST of CmoCh14G010830 vs. TrEMBL
Match: F6HJ83_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00410 PE=4 SV=1)

HSP 1 Score: 239.2 bits (609), Expect = 5.4e-60
Identity = 133/239 (55.65%), Postives = 166/239 (69.46%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTT-----DIPDPSANIKLILSHGVVRVYHRPISVSE 60
           MG+K L++Q  + W CFHL     +      + P+ S  IKLI S G+V++Y RPI VSE
Sbjct: 1   MGIKFLNLQT-IPW-CFHLMSNPVSCMHLQPEAPEGSGTIKLIKSDGIVKIYDRPIHVSE 60

Query: 61  ILLEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFSP 120
           ++LEFPKH VC SD+FYIGQKIP LSE D LQLGHKYFLLPK FF SVLSFV++ASF S 
Sbjct: 61  LMLEFPKHRVCHSDSFYIGQKIPALSEDDELQLGHKYFLLPKHFFQSVLSFVTVASFASS 120

Query: 121 PNKP-------------NRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQGNPK 180
            + P             N F   AA+C  PFD+Q+TPSGCLRIRVSDEFI+QL+E+G  K
Sbjct: 121 QSHPSPDSSSLMSRDSKNAFLKKAASC-QPFDIQKTPSGCLRIRVSDEFIAQLMEEGKIK 180

Query: 181 -----PLPSPPLPQGKICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKK 217
                   S   P+ ++CTTPQL K+YTQLV +R+WKPKLETI+ET+KK  +S FG+K+
Sbjct: 181 DEDGAAETSSGKPKSRVCTTPQLQKDYTQLVGSRQWKPKLETIKETEKK-KLSSFGMKR 235

[Close]

BLAST of CmoCh14G010830 vs. TrEMBL
Match: B9GYU1_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15830g PE=4 SV=1)

HSP 1 Score: 233.0 bits (593), Expect = 3.9e-58
Identity = 137/274 (50.00%), Postives = 176/274 (64.23%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTTDIP----DPSANIKLILSHGVVRVYHRPISVSEI 60
           MG++ L++Q M+ W CFH      T+ +      P+  IKLI S G+V++Y RP+ VSE+
Sbjct: 1   MGIRFLNLQ-MIPW-CFHNLMGNPTSCLQLQSEPPAGTIKLIKSDGLVKIYDRPVYVSEL 60

Query: 61  LLEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFS-- 120
           ++EFPKHLVC SD+FYIGQKIP LSE+D LQLGHKYFLLPK  F SVLSFV+IASF S  
Sbjct: 61  MVEFPKHLVCHSDSFYIGQKIPALSENDQLQLGHKYFLLPKDCFQSVLSFVTIASFTSSS 120

Query: 121 ----PPNKPNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQGNPKPLPSPP-- 180
               P +  N F   AA C  PFD+Q++P+GCLRIRVSD+FISQL+E+G  K        
Sbjct: 121 LQPQPSSSRNAFLKKAATC-QPFDIQKSPNGCLRIRVSDDFISQLMEEGKVKESGEDESS 180

Query: 181 ---LPQGKICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPP 240
               P+ ++CTTPQL K+YTQLV +R+WKPKLETI+E +K+   S FG+K+     S   
Sbjct: 181 GNCKPKSRVCTTPQLEKDYTQLVGSRQWKPKLETIKENEKRRLSSSFGMKRRKKSQSKVT 240

Query: 241 R-------SSYSLHHLRAIH----YKPKIRIKSR 249
           +       S   LH     H     K KI+IK R
Sbjct: 241 QKSTHRSVSEQHLHSTSTSHNKSSLKAKIKIKPR 271

[Close]

BLAST of CmoCh14G010830 vs. TrEMBL
Match: B9GMW5_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12680g PE=4 SV=1)

HSP 1 Score: 232.6 bits (592), Expect = 5.1e-58
Identity = 135/269 (50.19%), Postives = 172/269 (63.94%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAK---ATTTTDIPDPSANIKLILSHGVVRVYHRPISVSEIL 60
           MG++ L++Q ++ W CFHL     +        P+  IKLI S G+V++Y RPI VSE++
Sbjct: 1   MGIRFLNLQ-IIPW-CFHLMGNPISCLQIQSEPPAGTIKLIRSDGLVKIYDRPIYVSELM 60

Query: 61  LEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFS--- 120
           +EFPKHLVC SD+FYIGQKIP LSE+D LQLGHKYFLLPK  F SVLSFV+IASF S   
Sbjct: 61  VEFPKHLVCHSDSFYIGQKIPALSENDLLQLGHKYFLLPKHCFQSVLSFVTIASFASSSL 120

Query: 121 ---PPNKPNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQGNPKPLPSPP--- 180
              P +  N F   AA C  PFD+ ++P+GCLRIRVSDEF+SQL+E+G  K         
Sbjct: 121 QPQPSSSRNAFLKKAATC-QPFDILKSPNGCLRIRVSDEFLSQLMEEGKVKESEEDESSR 180

Query: 181 --LPQGKICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPPR 240
              P  ++CTTPQL K+YTQLV +R+WKPKLE+I E +K+   S FG+K+     S   +
Sbjct: 181 NCTPTSRVCTTPQLEKDYTQLVGSRQWKPKLESIRENEKRKLSSSFGMKRSKKSQSKVTQ 240

Query: 241 SSYSLHHLRAI-------HYKPKIRIKSR 249
            S    HL +          K KI IKSR
Sbjct: 241 KSTQEQHLHSTPTNHSKSSLKAKINIKSR 266

[Close]

BLAST of CmoCh14G010830 vs. TrEMBL
Match: A0A059AFS4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01660 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.8e-54
Identity = 129/262 (49.24%), Postives = 160/262 (61.07%), Query Frame = 1


Query: 30  DPSANIKLILSHGVVRVYHRPISVSEILLEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLG 89
           D +  +KLI S G+V  YHRP+  SE++ +FPKHLVCRSD+FYIGQKIP LSEHD LQLG
Sbjct: 43  DDAGTVKLIHSDGLVETYHRPVRASELMAQFPKHLVCRSDSFYIGQKIPALSEHDLLQLG 102

Query: 90  HKYFLLPKPFFHSVLSFVSIASFF--------SPPNKP-------NRFHTNAAACLHPFD 149
           HKYFLLP+ FF SVL+FV+IASF         SP   P       + F   AA C  PFD
Sbjct: 103 HKYFLLPQQFFQSVLTFVTIASFVASQKAQGPSPVPVPQDLNSCRSAFLRKAAGC-QPFD 162

Query: 150 LQRTPSGCLRIRVSDEFISQLLEQGNPKPLPS--------PPLPQGKICTTPQLAKEYTQ 209
           +QRTPSGCLRIRVSDEFISQL+EQG      +           P  ++CTTPQL ++Y+Q
Sbjct: 163 IQRTPSGCLRIRVSDEFISQLMEQGRRVEKEASRDSGGDGEQKPISRLCTTPQLERDYSQ 222

Query: 210 L-VRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPPRSSYSLHHLRA-----IH-- 249
           L V +RRW+PKLE I E+ K    S FG+K+    PSPP   S   H ++      +H  
Sbjct: 223 LVVLSRRWEPKLEMIRESDKSRSSSSFGMKRRKKPPSPPSTVSAPNHKIQKSSESHVHAA 282

[Close]

BLAST of CmoCh14G010830 vs. TAIR10
Match: AT1G28190.1 (AT1G28190.1 unknown protein)

HSP 1 Score: 149.4 bits (376), Expect = 2.9e-36
Identity = 98/243 (40.33%), Postives = 129/243 (53.09%), Query Frame = 1


Query: 13  SWSCFHLAKATTTTDIPDPSANIKLILSHGVVRVYHRPISVSEILLEFPKHLVCRSDAFY 72
           SW C H     T+         IKL+ S G ++VY RP+ VSE+  +FPKH +CRSD  Y
Sbjct: 22  SWLCLHPRPDRTSN-----GGRIKLVRSDGSLQVYDRPVVVSELTKDFPKHKICRSDLLY 81

Query: 73  IGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFSPPNKPNRFHTNAAACLHP 132
           IGQK P LSE + L+LG  YFLLP  FF + LSF++IA+  +P N              P
Sbjct: 82  IGQKTPVLSETETLKLGLNYFLLPSDFFKNDLSFLTIATLKTPQN-GGVLVKKTQQQPQP 141

Query: 133 FDLQRTPSG-CLRIRVSDEFISQLLEQGNPKPLPSPPLP-------QGKICTTPQLAKEY 192
           F +Q+   G  LRIRVS+EF+S+L+ +G    +             +G++CTT +L K+Y
Sbjct: 142 FLIQKGEKGERLRIRVSEEFVSELMMEGKKNRVNEEEEEEEGGGEGEGRVCTTVKLKKDY 201

Query: 193 TQLVRARRWKPKLETIEETK-KKGGISPFGLKKGNPFPSPPPRSSYSLHHLRAIHYKPKI 247
            QLV  RRWKPKLETI ETK  K        KK   F     +S       R +  K K 
Sbjct: 202 VQLVGLRRWKPKLETITETKAMKAATMEKTKKKRKRFTVMKKKSQSDSSSKRKLQSKSKS 258

[Close]

BLAST of CmoCh14G010830 vs. TAIR10
Match: AT5G12340.1 (AT5G12340.1 unknown protein)

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-19
Identity = 63/174 (36.21%), Postives = 94/174 (54.02%), Query Frame = 1


Query: 55  EILLEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFS 114
           EI+ EFP  +VC +D+FYIG++IP L+  D+L  G  YF+LP   F   +   S  S F+
Sbjct: 43  EIMFEFPDQIVCHADSFYIGRQIPALAMDDYLIPGQTYFVLPIERFQYKILTTSCLSIFN 102

Query: 115 PPNKPNRFHT-----NAAACLHPFDLQRTPSGCLRIRVSDEFISQLL-EQGNPKPLPSPP 174
              +  R +T      A +   PF+  + P+G + I+VS EFI  L+ +  N +   +  
Sbjct: 103 SNLENVRSNTPPLNFTAPSSPPPFEYSQGPNGKILIKVSPEFIISLICKNRNIREEEATS 162

Query: 175 LPQGK-ICTTPQLAKEYTQLV--RARRWKPKLETIEETKKKGGISP---FGLKK 217
             +   IC +P+L K+Y QLV  R   W P L+TI E K +  +SP   FGL +
Sbjct: 163 CGENSAICNSPELKKQYDQLVGTREHMWSPNLQTISEHKIR--VSPLRFFGLNR 214

[Close]

BLAST of CmoCh14G010830 vs. NCBI nr
Match: gi|659130422|ref|XP_008465162.1| (PREDICTED: uncharacterized protein LOC103502830 [Cucumis melo])

HSP 1 Score: 360.5 bits (924), Expect = 2.3e-96
Identity = 193/256 (75.39%), Postives = 207/256 (80.86%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTTDIPDPSANIKLILSHGVVRVYHRPISVSEILLEF 60
           MG+K LSVQNMVSWSCFHL K     D    + NIKLILS GVVR+YHRPI VSE+LLEF
Sbjct: 1   MGIKVLSVQNMVSWSCFHLMKNALPPDPASDNTNIKLILSDGVVRIYHRPIYVSEVLLEF 60

Query: 61  PKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFSP--PNK 120
           PKH VCRSD+FYIGQKIP LS+ D LQLGHKYFLLP PFFHSVLSFV+IASFFS    N 
Sbjct: 61  PKHSVCRSDSFYIGQKIPPLSDQDLLQLGHKYFLLPTPFFHSVLSFVTIASFFSSSNSNN 120

Query: 121 PNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQG-NPKPLP---SPPLPQGKI 180
            NRF  NAAAC  PFDLQRTPSGCLRIRVSDEFISQLLEQG NPKPLP   +P LP GKI
Sbjct: 121 KNRFINNAAACHCPFDLQRTPSGCLRIRVSDEFISQLLEQGNNPKPLPPQQTPSLPLGKI 180

Query: 181 CTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPPRSSYSLHHL 240
           CTTPQLAK+YTQLVR RRWKPKLETI+ET+KK  +S FGLKK  PF S P RS+Y L HL
Sbjct: 181 CTTPQLAKDYTQLVRTRRWKPKLETIKETQKK-RVSSFGLKKAIPFQSTPIRSAYPLPHL 240

Query: 241 RAIH--YKPKIRIKSR 249
           R+IH  YK KIRIKSR
Sbjct: 241 RSIHFAYKHKIRIKSR 255

[Close]

BLAST of CmoCh14G010830 vs. NCBI nr
Match: gi|778686117|ref|XP_011652332.1| (PREDICTED: uncharacterized protein LOC105435015 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 3.3e-95
Identity = 193/257 (75.10%), Postives = 207/257 (80.54%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTTDIPDP-SANIKLILSHGVVRVYHRPISVSEILLE 60
           MG+K LSVQNMVSWSCFHL K       P   S NIKLI S GVVR+YHRPI VSE+LLE
Sbjct: 1   MGIKVLSVQNMVSWSCFHLMKNAIPPPPPSSDSTNIKLIHSDGVVRIYHRPIYVSEVLLE 60

Query: 61  FPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFSPP--N 120
           FPKHLVCRSD+FYIGQKIP LS+ D LQLGHKYFLLP  FFHSVLSFV+IASFFS    N
Sbjct: 61  FPKHLVCRSDSFYIGQKIPPLSDQDLLQLGHKYFLLPTSFFHSVLSFVTIASFFSSSNNN 120

Query: 121 KPNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQG-NPKPLP---SPPLPQGK 180
             NRF  NAAA   PFDLQRTPSGCL+IRVSD+FISQLLEQG NPKPLP   SP LP GK
Sbjct: 121 NKNRFINNAAASHCPFDLQRTPSGCLKIRVSDDFISQLLEQGNNPKPLPPQQSPSLPLGK 180

Query: 181 ICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPPRSSYSLHH 240
           ICTTPQLAK+YTQLVR R+WKPKLETI+ET+KK  IS FGLKK NPFPS P RS Y LHH
Sbjct: 181 ICTTPQLAKDYTQLVRTRKWKPKLETIKETQKK-RISSFGLKKANPFPSTPIRSPYPLHH 240

Query: 241 LRAIH--YKPKIRIKSR 249
           LR+IH  YK KIRIK+R
Sbjct: 241 LRSIHFAYKHKIRIKAR 256

[Close]

BLAST of CmoCh14G010830 vs. NCBI nr
Match: gi|225425322|ref|XP_002273940.1| (PREDICTED: uncharacterized protein LOC100255664 [Vitis vinifera])

HSP 1 Score: 239.2 bits (609), Expect = 7.8e-60
Identity = 133/239 (55.65%), Postives = 166/239 (69.46%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTT-----DIPDPSANIKLILSHGVVRVYHRPISVSE 60
           MG+K L++Q  + W CFHL     +      + P+ S  IKLI S G+V++Y RPI VSE
Sbjct: 1   MGIKFLNLQT-IPW-CFHLMSNPVSCMHLQPEAPEGSGTIKLIKSDGIVKIYDRPIHVSE 60

Query: 61  ILLEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFSP 120
           ++LEFPKH VC SD+FYIGQKIP LSE D LQLGHKYFLLPK FF SVLSFV++ASF S 
Sbjct: 61  LMLEFPKHRVCHSDSFYIGQKIPALSEDDELQLGHKYFLLPKHFFQSVLSFVTVASFASS 120

Query: 121 PNKP-------------NRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQGNPK 180
            + P             N F   AA+C  PFD+Q+TPSGCLRIRVSDEFI+QL+E+G  K
Sbjct: 121 QSHPSPDSSSLMSRDSKNAFLKKAASC-QPFDIQKTPSGCLRIRVSDEFIAQLMEEGKIK 180

Query: 181 -----PLPSPPLPQGKICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKK 217
                   S   P+ ++CTTPQL K+YTQLV +R+WKPKLETI+ET+KK  +S FG+K+
Sbjct: 181 DEDGAAETSSGKPKSRVCTTPQLQKDYTQLVGSRQWKPKLETIKETEKK-KLSSFGMKR 235

[Close]

BLAST of CmoCh14G010830 vs. NCBI nr
Match: gi|224072449|ref|XP_002303737.1| (hypothetical protein POPTR_0003s15830g [Populus trichocarpa])

HSP 1 Score: 233.0 bits (593), Expect = 5.6e-58
Identity = 137/274 (50.00%), Postives = 176/274 (64.23%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAKATTTTDIP----DPSANIKLILSHGVVRVYHRPISVSEI 60
           MG++ L++Q M+ W CFH      T+ +      P+  IKLI S G+V++Y RP+ VSE+
Sbjct: 1   MGIRFLNLQ-MIPW-CFHNLMGNPTSCLQLQSEPPAGTIKLIKSDGLVKIYDRPVYVSEL 60

Query: 61  LLEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFS-- 120
           ++EFPKHLVC SD+FYIGQKIP LSE+D LQLGHKYFLLPK  F SVLSFV+IASF S  
Sbjct: 61  MVEFPKHLVCHSDSFYIGQKIPALSENDQLQLGHKYFLLPKDCFQSVLSFVTIASFTSSS 120

Query: 121 ----PPNKPNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQGNPKPLPSPP-- 180
               P +  N F   AA C  PFD+Q++P+GCLRIRVSD+FISQL+E+G  K        
Sbjct: 121 LQPQPSSSRNAFLKKAATC-QPFDIQKSPNGCLRIRVSDDFISQLMEEGKVKESGEDESS 180

Query: 181 ---LPQGKICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPP 240
               P+ ++CTTPQL K+YTQLV +R+WKPKLETI+E +K+   S FG+K+     S   
Sbjct: 181 GNCKPKSRVCTTPQLEKDYTQLVGSRQWKPKLETIKENEKRRLSSSFGMKRRKKSQSKVT 240

Query: 241 R-------SSYSLHHLRAIH----YKPKIRIKSR 249
           +       S   LH     H     K KI+IK R
Sbjct: 241 QKSTHRSVSEQHLHSTSTSHNKSSLKAKIKIKPR 271

[Close]

BLAST of CmoCh14G010830 vs. NCBI nr
Match: gi|224057866|ref|XP_002299363.1| (hypothetical protein POPTR_0001s12680g [Populus trichocarpa])

HSP 1 Score: 232.6 bits (592), Expect = 7.3e-58
Identity = 135/269 (50.19%), Postives = 172/269 (63.94%), Query Frame = 1


Query: 1   MGMKALSVQNMVSWSCFHLAK---ATTTTDIPDPSANIKLILSHGVVRVYHRPISVSEIL 60
           MG++ L++Q ++ W CFHL     +        P+  IKLI S G+V++Y RPI VSE++
Sbjct: 1   MGIRFLNLQ-IIPW-CFHLMGNPISCLQIQSEPPAGTIKLIRSDGLVKIYDRPIYVSELM 60

Query: 61  LEFPKHLVCRSDAFYIGQKIPHLSEHDFLQLGHKYFLLPKPFFHSVLSFVSIASFFS--- 120
           +EFPKHLVC SD+FYIGQKIP LSE+D LQLGHKYFLLPK  F SVLSFV+IASF S   
Sbjct: 61  VEFPKHLVCHSDSFYIGQKIPALSENDLLQLGHKYFLLPKHCFQSVLSFVTIASFASSSL 120

Query: 121 ---PPNKPNRFHTNAAACLHPFDLQRTPSGCLRIRVSDEFISQLLEQGNPKPLPSPP--- 180
              P +  N F   AA C  PFD+ ++P+GCLRIRVSDEF+SQL+E+G  K         
Sbjct: 121 QPQPSSSRNAFLKKAATC-QPFDILKSPNGCLRIRVSDEFLSQLMEEGKVKESEEDESSR 180

Query: 181 --LPQGKICTTPQLAKEYTQLVRARRWKPKLETIEETKKKGGISPFGLKKGNPFPSPPPR 240
              P  ++CTTPQL K+YTQLV +R+WKPKLE+I E +K+   S FG+K+     S   +
Sbjct: 181 NCTPTSRVCTTPQLEKDYTQLVGSRQWKPKLESIRENEKRKLSSSFGMKRSKKSQSKVTQ 240

Query: 241 SSYSLHHLRAI-------HYKPKIRIKSR 249
            S    HL +          K KI IKSR
Sbjct: 241 KSTQEQHLHSTPTNHSKSSLKAKINIKSR 266

The following BLAST results are available for this feature:

BLAST of CmoCh14G010830 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G010830 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCN9_CUCSA	2.3e-95	75.10	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G846010 PE=4 SV=1	[more]
F6HJ83_VITVI	5.4e-60	55.65	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_01s0150g00410 PE=4 SV=...	[more]
B9GYU1_POPTR	3.9e-58	50.00	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0003s15830g PE=4 SV=1	[more]
B9GMW5_POPTR	5.1e-58	50.19	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0001s12680g PE=4 SV=1	[more]
A0A059AFS4_EUCGR	5.8e-54	49.24	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01660 PE=4 SV=1	[more]

BLAST of CmoCh14G010830 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G28190.1	2.9e-36	40.33	unknown protein	[more]
AT5G12340.1	9.2e-19	36.21	unknown protein	[more]

BLAST of CmoCh14G010830 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659130422\|ref\|XP_008465162.1\|	2.3e-96	75.39	PREDICTED: uncharacterized protein LOC103502830 [Cucumis melo]	[more]
gi\|778686117\|ref\|XP_011652332.1\|	3.3e-95	75.10	PREDICTED: uncharacterized protein LOC105435015 [Cucumis sativus]	[more]
gi\|225425322\|ref\|XP_002273940.1\|	7.8e-60	55.65	PREDICTED: uncharacterized protein LOC100255664 [Vitis vinifera]	[more]
gi\|224072449\|ref\|XP_002303737.1\|	5.6e-58	50.00	hypothetical protein POPTR_0003s15830g [Populus trichocarpa]	[more]
gi\|224057866\|ref\|XP_002299363.1\|	7.3e-58	50.19	hypothetical protein POPTR_0001s12680g [Populus trichocarpa]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR025322	DUF4228_plant

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071229	cellular response to acid chemical
biological_process	GO:0071310	cellular response to organic substance
biological_process	GO:1901701	cellular response to oxygen-containing compound
biological_process	GO:0009725	response to hormone
biological_process	GO:0007165	signal transduction
biological_process	GO:0010033	response to organic substance
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005634	nucleus
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G010830.1	CmoCh14G010830.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR025322	Protein of unknown function DUF4228, plant	PFAM	PF14009	DUF4228	coord: 13..202 score: 1.9
None	No IPR available	PANTHER	PTHR33052	FAMILY NOT NAMED	coord: 13..216 score: 6.2
None	No IPR available	PANTHER	PTHR33052:SF10	F3H9.15 PROTEIN	coord: 13..216 score: 6.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G010830	Cucsa.340780	Cucumber (Gy14) v1	cgycmoB0930
CmoCh14G010830	CmaCh14G010640	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G010830	CmaCh06G017510	Cucurbita maxima (Rimu)	cmacmoB800
CmoCh14G010830	Cla017198	Watermelon (97103) v1	cmowmB213
CmoCh14G010830	Csa3G846010	Cucumber (Chinese Long) v2	cmocuB243
CmoCh14G010830	MELO3C026752	Melon (DHL92) v3.5.1	cmomeB210
CmoCh14G010830	ClCG10G013080	Watermelon (Charleston Gray)	cmowcgB206
CmoCh14G010830	CSPI03G41030	Wild cucumber (PI 183967)	cmocpiB246
CmoCh14G010830	Cp4.1LG00g01970	Cucurbita pepo (Zucchini)	cmocpeB217
CmoCh14G010830	MELO3C026752.2	Melon (DHL92) v3.6.1	cmomedB239
CmoCh14G010830	CsaV3_3G043500	Cucumber (Chinese Long) v3	cmocucB0287
CmoCh14G010830	Cla97C10G195940	Watermelon (97103) v2	cmowmbB229
CmoCh14G010830	Bhi11G001269	Wax gourd	cmowgoB0279
CmoCh14G010830	CsGy3G038510	Cucumber (Gy14) v2	cgybcmoB293
CmoCh14G010830	Carg11274	Silver-seed gourd	carcmoB1102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G010830	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G010830	Cucurbita pepo (Zucchini)	cmocpeB256
CmoCh14G010830	Bottle gourd (USVL1VR-Ls)	cmolsiB228
CmoCh14G010830	Silver-seed gourd	carcmoB0381
CmoCh14G010830	Cucurbita moschata (Rifu)	cmocmoB226