CmoCh14G010250 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G010250
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	DIS3-exonuclease-like protein
Location	Cmo_Chr14 : 5582751 .. 5582951 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTATGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTCTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAG

mRNA sequence

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTATGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTCTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAG

Coding sequence (CDS)

ATGTTGCAGTTCTTCTTCACGGTGGCTTTCTCTGCAGTACCTTTGACTCTCTATGTTCCGCCTCTCCGGAGCTTCAATCTCTTCGTCGAGACCATGGAGGAGATACTTCGCGAGTCCAGAACGTATACCAATCGGGTCTATCCGCGGGCTCGGCATGTTTGGTTTAGGGTTTTGGATTGTGTTCTTTGCAGCACCAGGTAG

Homology

[Close]

BLAST of CmoCh14G010250 vs. TrEMBL
Match: A0A0A0LD25_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697900 PE=4 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 8.5e-29
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of CmoCh14G010250 vs. TrEMBL
Match: M5X2Z7_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014472mg PE=4 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 1.4e-23
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFTVAFSAVPLTLYVPPLRS N FVETME++L ESR+YTNRVYPR RH+W R+LDC
Sbjct: 3  MLQLFFTVAFSAVPLTLYVPPLRSLNPFVETMEDLLSESRSYTNRVYPRVRHLWVRILDC 62

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 63 LLCSTR 68

[Close]

BLAST of CmoCh14G010250 vs. TrEMBL
Match: A0A067D090_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043785mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFTVAFSAVPLTLY+PPLRS NLFVETME+ LRESR YTNR+YPRAR VW RVLDC
Sbjct: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60

Query: 61 VLCSTR 67
          +LC+ R
Sbjct: 61 ILCNLR 66

[Close]

BLAST of CmoCh14G010250 vs. TrEMBL
Match: V4VIB3_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033564mg PE=4 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 4.1e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFTVAFSAVPLTLY+PPLRS NLFVETME+ LRESR YTNR+YPRAR VW RVLDC
Sbjct: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60

Query: 61 VLCSTR 67
          +LC+ R
Sbjct: 61 ILCNLR 66

[Close]

BLAST of CmoCh14G010250 vs. TrEMBL
Match: A0A059ADU6_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01270 PE=4 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 5.3e-23
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          +LQ FFTVAFSAVPLTLYVPP+RS NLFVETME++LRESRTYT+RVYPR RH W R++DC
Sbjct: 2  VLQLFFTVAFSAVPLTLYVPPIRSLNLFVETMEDLLRESRTYTHRVYPRVRHAWVRMVDC 61

Query: 61 VLCST 66
          +LCST
Sbjct: 62 LLCST 66

[Close]

BLAST of CmoCh14G010250 vs. TAIR10
Match: AT3G52105.1 (AT3G52105.1 unknown protein)

HSP 1 Score: 86.3 bits (212), Expect = 7.9e-18
Identity = 40/66 (60.61%), Postives = 50/66 (75.76%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFT+AFSA PLTLY+PP+R   +FVETMEE+  E R Y+ R++PRAR  W R+LDC
Sbjct: 1  MLQLFFTIAFSAAPLTLYIPPIRCLTVFVETMEEMGMEGRVYSWRLFPRARIAWSRLLDC 60

Query: 61 VLCSTR 67
             S+R
Sbjct: 61 FFSSSR 66

[Close]

BLAST of CmoCh14G010250 vs. NCBI nr
Match: gi|778682809|ref|XP_011651782.1| (PREDICTED: uncharacterized protein LOC105434940 [Cucumis sativus])

HSP 1 Score: 133.7 bits (335), Expect = 1.2e-28
Identity = 64/66 (96.97%), Postives = 65/66 (98.48%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVW RVLDC
Sbjct: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWLRVLDC 60

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 61 ILCSTR 66

[Close]

BLAST of CmoCh14G010250 vs. NCBI nr
Match: gi|1009129401|ref|XP_015881745.1| (PREDICTED: uncharacterized protein LOC107417643 [Ziziphus jujuba])

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-24
Identity = 54/66 (81.82%), Postives = 62/66 (93.94%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFTVAFSAVPLTLYVPP+RS NLFVETME++LRESRTYT+RVYPR RH+W R+LDC
Sbjct: 1  MLQLFFTVAFSAVPLTLYVPPIRSLNLFVETMEDLLRESRTYTHRVYPRVRHIWARILDC 60

Query: 61 VLCSTR 67
          +LC+TR
Sbjct: 61 ILCNTR 66

[Close]

BLAST of CmoCh14G010250 vs. NCBI nr
Match: gi|596012486|ref|XP_007218667.1| (hypothetical protein PRUPE_ppa014472mg [Prunus persica])

HSP 1 Score: 116.3 bits (290), Expect = 2.0e-23
Identity = 54/66 (81.82%), Postives = 60/66 (90.91%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFTVAFSAVPLTLYVPPLRS N FVETME++L ESR+YTNRVYPR RH+W R+LDC
Sbjct: 3  MLQLFFTVAFSAVPLTLYVPPLRSLNPFVETMEDLLSESRSYTNRVYPRVRHLWVRILDC 62

Query: 61 VLCSTR 67
          +LCSTR
Sbjct: 63 LLCSTR 68

[Close]

BLAST of CmoCh14G010250 vs. NCBI nr
Match: gi|567893207|ref|XP_006439124.1| (hypothetical protein CICLE_v10033564mg [Citrus clementina])

HSP 1 Score: 114.8 bits (286), Expect = 5.8e-23
Identity = 54/66 (81.82%), Postives = 59/66 (89.39%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          MLQ FFTVAFSAVPLTLY+PPLRS NLFVETME+ LRESR YTNR+YPRAR VW RVLDC
Sbjct: 1  MLQLFFTVAFSAVPLTLYIPPLRSLNLFVETMEDFLRESRIYTNRLYPRARFVWSRVLDC 60

Query: 61 VLCSTR 67
          +LC+ R
Sbjct: 61 ILCNLR 66

[Close]

BLAST of CmoCh14G010250 vs. NCBI nr
Match: gi|629085464|gb|KCW51821.1| (hypothetical protein EUGRSUZ_J01270 [Eucalyptus grandis])

HSP 1 Score: 114.4 bits (285), Expect = 7.6e-23
Identity = 52/65 (80.00%), Postives = 60/65 (92.31%), Query Frame = 1


Query: 1  MLQFFFTVAFSAVPLTLYVPPLRSFNLFVETMEEILRESRTYTNRVYPRARHVWFRVLDC 60
          +LQ FFTVAFSAVPLTLYVPP+RS NLFVETME++LRESRTYT+RVYPR RH W R++DC
Sbjct: 2  VLQLFFTVAFSAVPLTLYVPPIRSLNLFVETMEDLLRESRTYTHRVYPRVRHAWVRMVDC 61

Query: 61 VLCST 66
          +LCST
Sbjct: 62 LLCST 66

The following BLAST results are available for this feature:

BLAST of CmoCh14G010250 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G010250 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LD25_CUCSA	8.5e-29	96.97	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G697900 PE=4 SV=1	[more]
M5X2Z7_PRUPE	1.4e-23	81.82	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014472mg PE=4 SV=1	[more]
A0A067D090_CITSI	4.1e-23	81.82	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g043785mg PE=4 SV=1	[more]
V4VIB3_9ROSI	4.1e-23	81.82	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10033564mg PE=4 SV=1	[more]
A0A059ADU6_EUCGR	5.3e-23	80.00	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J01270 PE=4 SV=1	[more]

BLAST of CmoCh14G010250 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52105.1	7.9e-18	60.61	unknown protein	[more]

BLAST of CmoCh14G010250 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778682809\|ref\|XP_011651782.1\|	1.2e-28	96.97	PREDICTED: uncharacterized protein LOC105434940 [Cucumis sativus]	[more]
gi\|1009129401\|ref\|XP_015881745.1\|	1.4e-24	81.82	PREDICTED: uncharacterized protein LOC107417643 [Ziziphus jujuba]	[more]
gi\|596012486\|ref\|XP_007218667.1\|	2.0e-23	81.82	hypothetical protein PRUPE_ppa014472mg [Prunus persica]	[more]
gi\|567893207\|ref\|XP_006439124.1\|	5.8e-23	81.82	hypothetical protein CICLE_v10033564mg [Citrus clementina]	[more]
gi\|629085464\|gb\|KCW51821.1\|	7.6e-23	80.00	hypothetical protein EUGRSUZ_J01270 [Eucalyptus grandis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0090305	nucleic acid phosphodiester bond hydrolysis
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004527	exonuclease activity
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G010250.1	CmoCh14G010250.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR36616	FAMILY NOT NAMED	coord: 1..66 score: 9.7
None	No IPR available	PANTHER	PTHR36616:SF1	SUBFAMILY NOT NAMED	coord: 1..66 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G010250	Cucsa.195130	Cucumber (Gy14) v1	cgycmoB0569
CmoCh14G010250	CmaCh14G010080	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G010250	Cla017263	Watermelon (97103) v1	cmowmB213
CmoCh14G010250	Csa3G697900	Cucumber (Chinese Long) v2	cmocuB228
CmoCh14G010250	MELO3C023969	Melon (DHL92) v3.5.1	cmomeB210
CmoCh14G010250	ClCG10G012440	Watermelon (Charleston Gray)	cmowcgB206
CmoCh14G010250	Lsi03G012110	Bottle gourd (USVL1VR-Ls)	cmolsiB228
CmoCh14G010250	Cp4.1LG02g15760	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G010250	Cp4.1LG03g04490	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G010250	CsaV3_3G032210	Cucumber (Chinese Long) v3	cmocucB0271
CmoCh14G010250	Cla97C10G195230	Watermelon (97103) v2	cmowmbB229
CmoCh14G010250	Bhi11G001186	Wax gourd	cmowgoB0279
CmoCh14G010250	Carg11225	Silver-seed gourd	carcmoB1102

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G010250	Watermelon (97103) v2	cmowmbB265
CmoCh14G010250	Wax gourd	cmowgoB0354
CmoCh14G010250	Cucurbita moschata (Rifu)	cmocmoB199
CmoCh14G010250	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh14G010250	Cucurbita moschata (Rifu)	cmocmoB229
CmoCh14G010250	Cucurbita maxima (Rimu)	cmacmoB351
CmoCh14G010250	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G010250	Cucurbita maxima (Rimu)	cmacmoB879
CmoCh14G010250	Wild cucumber (PI 183967)	cmocpiB231
CmoCh14G010250	Wild cucumber (PI 183967)	cmocpiB266
CmoCh14G010250	Cucumber (Chinese Long) v2	cmocuB260
CmoCh14G010250	Melon (DHL92) v3.5.1	cmomeB204
CmoCh14G010250	Watermelon (Charleston Gray)	cmowcgB205
CmoCh14G010250	Watermelon (97103) v1	cmowmB209
CmoCh14G010250	Watermelon (97103) v1	cmowmB210
CmoCh14G010250	Watermelon (97103) v1	cmowmB212
CmoCh14G010250	Cucurbita pepo (Zucchini)	cmocpeB224
CmoCh14G010250	Cucurbita pepo (Zucchini)	cmocpeB232
CmoCh14G010250	Bottle gourd (USVL1VR-Ls)	cmolsiB220
CmoCh14G010250	Cucumber (Gy14) v2	cgybcmoB280
CmoCh14G010250	Cucumber (Gy14) v2	cgybcmoB893
CmoCh14G010250	Melon (DHL92) v3.6.1	cmomedB230
CmoCh14G010250	Melon (DHL92) v3.6.1	cmomedB239
CmoCh14G010250	Silver-seed gourd	carcmoB0479
CmoCh14G010250	Silver-seed gourd	carcmoB0607
CmoCh14G010250	Silver-seed gourd	carcmoB1031
CmoCh14G010250	Cucumber (Chinese Long) v3	cmocucB0312