CmoCh14G009350 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G009350
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRNA-binding (RRM/RBD/RNP motifs) family protein
LocationCmo_Chr14 : 4962543 .. 4965887 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
CCTGCGAGCGGAGTGACATTGCATGTATCGGATCAAGCCGTCGTTCTCCGTGGTCGACCATCGTTGTTTCCTTTTCGACCTCCTTAGCTTTTCCATTTGAGCATATCTATTAGGCGGACGGAGGTGAAAGAAATGGCGGAGGTCAACAGCACTGGCAATGAAGTTCCTTCGAACATGACCATCTACATTAACAATCTGAACGAGAAAATCAAGCTGGAAGGTATTCTTGAGGCGAGGGGGATAGGGGAGCTTCTTTAATGATCTGAATTATGGTGTGTTTTTTACTGTTTACTCCTTGGTGGAGCAGAATTAAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAAATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGGCAGGCTTGGGTTGTGTTCGAAGAAGTCTCTTCCGCCACTAATTCGATTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGGTAATGTGCTTCTTAGCCTTTTCAACTGCGAGAACTTTTATGTTGTTTGTTAAATTCGAGTTTAAGATGAAGACTAAATAAGTGTTGCTGTGAAGATATCGTTATCGTTCGTATGCGCACTTAATTAATGTAATAAAAATCATAGTGGCGAATGGGAAAGTGCCAATATATTTTTCTGAGCTACGAATTGGAATTGTGTTTGGGTTATATTTCGTCTTATCTTATTAGACAGTTGAGATTTAGTTACATATGGCTTGTAAATAATGTGGTTTTGCTGATTATTGCCAAACTGACGGCCTGGTCTGCTTGGATTTTTATAGCTGATATCATTTCGACGAAGCTAAAGAACAATTATTCTTTGATGATCAAGCATGTAACAGAATATGCACTGAGCCTTTGATCTTGAAGTGTATGTATACTTCTTAAATATATCCATTGTAGGCGTTTGAATTTATCGACCTGTGCTTTATGGCATTGGTTCTTAATATTTTCAACCACATCAAGTGGTTGTCAAATGGGGCTTCGGCAAATCTTTTGAAAGTTCTATATTTGTTGAGCATTTCTTGTTTGTAAATCTGGTGGCTAATATCCATATTTTCTTTGGATTTATGAAAATGTGTCATAGGCTTTATATCTTTTTCCATGGTATAAAGTGCAGACAACTCTATATATCATTTATTCCTCTGGTCTATTATTCATCTTTTGTTAGCTGGACTAATATTTTGGAAGTGTATCTTTTGTTAGCTGGACTAATATTTTGGGGGAGTGTGGTGTAATACTTAACTAAGTGATGTTGTTTTGCAATGGTGTAGAGGATCCAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCACGGGGAAAAGGGTATAATTTGTCTTTATTTTCTATTTGACAATTCAAGAAAGTGAAGGAACGTGTTGTTCTATTGCTTATGTAGCAGTGTTTAATCAAAGATTTGTCCATTCTCTTGATGTGGTAGGGAGGAAGAAGAAAGAGCAGCATGATACTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTTCTGGAGCATATGGCGCAACAGGGGTAAGTATCTCTATTTAATACCTAAACATTAGGTTTTGGAAAATTCTTTTTTTTTTCTATTTGAGCCTTCACTAACTTGCATAGTTGATTCTCCCACAATGTCAGTTTAGGATATTATATTCATCTGTTGTTAAAAAATGTATTCCAAGTGTTTCACTGACATGATTGTAAACTATAAAATCATAAAGGACAAGTAATAAGAGGTAGAACTTCACTTCCTGAGGCTAATTTTGCTTACTAAGAATGATGCTCTCTCTTCCATTCTCATTTCTCACTCTTTTCAGTAATTTGTATGTTATTCTATGCAATAGGAAGCACTTCATTCTCTTACTCCCTCCTCCTGGTAGTGAAAGTTCATTGTTATTTTTAGTTATTCATTTGGATTTTATCTGCCTTTTTATTTCCTTTCGCAGAGAGAGAGAAAGATATATTATATAGAGAACGAAGAAACGTACCATGGGGGTTATTTGCATTTATTTCTTTTTTTCATTTCATATATCACAATGTGATGATTGTTAAAGAAGCCTTTACCAAATGATTCAACGCTTTAATTTCTGGGACTTAGTTGGTGATGTCTTCATGAGTAGATGTATTCTTGTATGTCTTTTATCTATTGACTAAGTTTTAAGGCGGCAAATCTTGGTTGACATTCATCGTATGAATAATTTTGATACTTAATTATGTTTATTTATTGGAATTTATATGTTACTAACGCACAGGTTCTCTTTCCTTCCCCCCTTCTGAAAATGGTGCAGCATTCTCAAGTCCCTTATCCAGGTGGAGTTATGGTACCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTATACAAAATCTTCCCCAGGAGACAACTCCAACGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTATGGTGATGAGGTACAATCGACAGTAGCCATGCAAGCACTCCAAGGTTTTAAGATGAATCCACAAAATTCAATGTTGATAACCTACGCGAAGAAATAGGATATGAATCTCGTTCTTCACTGTATGGAAAGGCGCTATTATTCGATGCTCAGTACAGGAGATTATTTGTAAGATATGGTCATCTTGTTCTGGCTGGAAATTCTAGTCGGCCGTGACTTGTATGATATAATCAGATCAGTTCTCTTAACCAGGAATAGAAGAGATCTCAGATCACAGCGGGATCACAGTGGTTGCCATGATTAGCCGTGAACTCATTCATCATCACATTTTAGTTCTCATTTTCATAGTAGTATTTCCTTCTAGTTGTGCTATAAAATAGACCGAAAGTCGTTATAATTAAGAGATTGAAGTGCTGATGATGTTGAGATCTAATTTGGTACAGACTTTATTTTACTGAACAGCAAGCTCTACCGGTACCAGATTACAACAATTCCACCGTGCAAGCACAATGAGCTGCTGCTGAAGTGTTGAGGGAGAAATCCAGTAAGTACAGCTTAATTCTTGAACTGAATTTTGTCTAGTATGTAGATTACTCGAGCCTTAGGTGTAGCAGAATTTTACTTTTACGACGTAGCGAGTTCGAGTATGGTTGATATTGTAGATTTTGTATTTGTTATATTGGAGAATGAGAGTTGGCTGGAAGAAAAAAAAGTTTGTATGAACAAAACATTTATTTAAGCATATGAATCAAAATAACTGTGAAAAATGATTAGATATGTGAGATTAGATTGGCCCTTGTATAGGGTTCGGCGAC

mRNA sequence

CCTGCGAGCGGAGTGACATTGCATGTATCGGATCAAGCCGTCGTTCTCCGTGGTCGACCATCGTTGTTTCCTTTTCGACCTCCTTAGCTTTTCCATTTGAGCATATCTATTAGGCGGACGGAGGTGAAAGAAATGGCGGAGGTCAACAGCACTGGCAATGAAGTTCCTTCGAACATGACCATCTACATTAACAATCTGAACGAGAAAATCAAGCTGGAAGAATTAAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAAATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGGCAGGCTTGGGTTGTGTTCGAAGAAGTCTCTTCCGCCACTAATTCGATTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATCCAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCACGGGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATACTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTTCTGGAGCATATGGCGCAACAGGGCATTCTCAAGTCCCTTATCCAGGTGGAGTTATGGTACCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTATACAAAATCTTCCCCAGGAGACAACTCCAACGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTATGGTGATGAGGTACAATCGACAGTAGCCATGCAAGCACTCCAAGGTTTTAAGATGAATCCACAAAATTCAATGTTGATAACCTACGCGAAGAAATAGGATATGAATCTCGTTCTTCACTGTATGGAAAGGCGCTATTATTCGATGCTCAGTACAGGAGATTATTTGTAAGATATGGTCATCTTGTTCTGGCTGGAAATTCTAGTCGGCCGTGACTTGTATGATATAATCAGATCAGTTCTCTTAACCAGGAATAGAAGAGATCTCAGATCACAGCGGGATCACAGTGGTTGCCATGATTAGCCGTGAACTCATTCATCATCACATTTTAGTTCTCATTTTCATAGTAGTATTTCCTTCTAGTTGTGCTATAAAATAGACCGAAAGTCGTTATAATTAAGAGATTGAAGTGCTGATGATGTTGAGATCTAATTTGGTACAGACTTTATTTTACTGAACAGCAAGCTCTACCGGTACCAGATTACAACAATTCCACCGTGCAAGCACAATGAGCTGCTGCTGAAGTGTTGAGGGAGAAATCCAGTAAGTACAGCTTAATTCTTGAACTGAATTTTGTCTAGTATGTAGATTACTCGAGCCTTAGGTGTAGCAGAATTTTACTTTTACGACGTAGCGAGTTCGAGTATGGTTGATATTGTAGATTTTGTATTTGTTATATTGGAGAATGAGAGTTGGCTGGAAGAAAAAAAAGTTTGTATGAACAAAACATTTATTTAAGCATATGAATCAAAATAACTGTGAAAAATGATTAGATATGTGAGATTAGATTGGCCCTTGTATAGGGTTCGGCGAC

Coding sequence (CDS)

ATGGCGGAGGTCAACAGCACTGGCAATGAAGTTCCTTCGAACATGACCATCTACATTAACAATCTGAACGAGAAAATCAAGCTGGAAGAATTAAAGAAGTCGCTGAACGCGGTGTTCTCGCAGTTCGGGAAAATTCTGGAAGTGTTGGCTTTCAAGACCTTGAAGCACAAGGGGCAGGCTTGGGTTGTGTTCGAAGAAGTCTCTTCCGCCACTAATTCGATTAGACAAATGCAGGGCTTTCCTTTCTATGATAAGCCTATGAGGATCCAATATGCAAAGACAAAATCAGATATAATTGCAAAGTCTGATGGTACATTTGTTCCCCGGGAGAAACGAAAGAGGCACGGGGAAAAGGGGAGGAAGAAGAAAGAGCAGCATGATACTAATCAAGCTGGGATGGGTCTGAATCCTGCTTTTTCTGGAGCATATGGCGCAACAGGGCATTCTCAAGTCCCTTATCCAGGTGGAGTTATGGTACCAGAAGCACCTGCCCCGCCCAATAGCATTTTGTTTATACAAAATCTTCCCCAGGAGACAACTCCAACGATGCTACAAATGCTTTTCTGTCAGTATCCTGGTTTTAAGGAGGTTCGTATGGTTGAAGCAAAGCCAGGTATTGCATTTGTAGAGTATGGTGATGAGGTACAATCGACAGTAGCCATGCAAGCACTCCAAGGTTTTAAGATGAATCCACAAAATTCAATGTTGATAACCTACGCGAAGAAATAG
Homology
[Close]
BLAST of CmoCh14G009350 vs. Swiss-Prot
Match: RU1A_ARATH (U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 1.4e-93
Identity = 180/249 (72.29%), Postives = 205/249 (82.33%), Query Frame = 1 

Query: 1   MAEVNSTG-NEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N  G +EV  N TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKG 120
           AWVVF+   SA+ +I +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRH EKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDTNQAGMGLNPAFSGAYGATGH-SQVPYPGGVM--VPEAPAPPNSILFIQ 180
              +KK + HD+ Q GM +N A+ G YGA    SQVPYPGG+   +PEAPAPPN+ILF+Q
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLP ETTP +LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]
BLAST of CmoCh14G009350 vs. Swiss-Prot
Match: RU1A_ORYSJ (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g0154800 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 5.9e-89
Identity = 173/239 (72.38%), Postives = 199/239 (83.26%), Query Frame = 1 

Query: 9   NEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  P N+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKK---KEQ 128
           SAT +++ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR+ EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDTNQAGMGLNPAFSGAYGATGHSQVPYPGG--VMVPEAPAPPNSILFIQNLPQETTPTM 188
           HD +Q G+G+N A+ G YGA   SQ+P+ G   VM+PE    PN+ILF+QNLP ETTP M
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of CmoCh14G009350 vs. Swiss-Prot
Match: RU1A_ORYSI (U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 PE=3 SV=1)

HSP 1 Score: 328.6 bits (841), Expect = 5.9e-89
Identity = 173/239 (72.38%), Postives = 199/239 (83.26%), Query Frame = 1 

Query: 9   NEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 68
           N  P N+TIYINNLNEKIKLEELKKSL AVFSQFGKIL+VLAFKTLKHKGQAWVVFE+V+
Sbjct: 17  NGAPPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVA 76

Query: 69  SATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKK---KEQ 128
           SAT +++ MQ FPF++KPMRIQYAKTKSDIIAK+DGTFVPRE+RKR+ EK  KK   ++ 
Sbjct: 77  SATEALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQH 136

Query: 129 HDTNQAGMGLNPAFSGAYGATGHSQVPYPGG--VMVPEAPAPPNSILFIQNLPQETTPTM 188
           HD +Q G+G+N A+ G YGA   SQ+P+ G   VM+PE    PN+ILF+QNLP ETTP M
Sbjct: 137 HDVSQVGLGVN-AYPGVYGAPPLSQLPFAGAQKVMMPEI-IVPNNILFVQNLPHETTPMM 196

Query: 189 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDE Q+T AM  LQGFK+   N MLI+YAKK
Sbjct: 197 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253

[Close]
BLAST of CmoCh14G009350 vs. Swiss-Prot
Match: RU2B1_ARATH (U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=1)

HSP 1 Score: 264.6 bits (675), Expect = 1.0e-69
Identity = 134/233 (57.51%), Postives = 180/233 (77.25%), Query Frame = 1 

Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A +++RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++  EK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           +      P+   A G + ++ VP P      +   PPN+ILFIQNLP ETT  MLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CmoCh14G009350 vs. Swiss-Prot
Match: RU2B2_ARATH (U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE=1 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 1.4e-69
Identity = 134/233 (57.51%), Postives = 177/233 (75.97%), Query Frame = 1 

Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A+N++RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ +  EK  +K+   +T 
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           Q  M          GAT  + +P P      +   PPN+ILFI NLP ET   MLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CmoCh14G009350 vs. TrEMBL
Match: A0A0A0KWK4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001840 PE=4 SV=1)

HSP 1 Score: 451.1 bits (1159), Expect = 8.8e-124
Identity = 227/242 (93.80%), Postives = 233/242 (96.28%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATN++RQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CmoCh14G009350 vs. TrEMBL
Match: A0A0L9VLC5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g159400 PE=4 SV=1)

HSP 1 Score: 397.9 bits (1021), Expect = 8.8e-108
Identity = 203/244 (83.20%), Postives = 224/244 (91.80%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           M+EVN+T  EV  N TIYINNLNEKIK++ELKKSLNAVF+QFGKILEVLAFKTLKHKGQA
Sbjct: 1   MSEVNATP-EVTQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSA+N++RQMQGFPFYDKPMRIQYAKTKSD+IAK+DGTFVPREKRKRH +KG+
Sbjct: 61  WVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGK 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGV--MVPEAPAPPNSILFIQNLPQE 180
           K+K+QHD N AGMGLNPA+SGAYGAT    +PYPGG   MVPEAPAPPN+ILFIQNLP E
Sbjct: 121 KRKDQHDANLAGMGLNPAYSGAYGAT--PTIPYPGGAKSMVPEAPAPPNNILFIQNLPNE 180

Query: 181 TTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLIT 240
           +TP MLQMLF QYPGFKEVRMVEAKPGIAFVEYGDE+QSTVAMQ+LQGFK+ PQN MLIT
Sbjct: 181 STPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLIT 240

Query: 241 YAKK 243
           YAKK
Sbjct: 241 YAKK 241

[Close]
BLAST of CmoCh14G009350 vs. TrEMBL
Match: A0A151TXR0_CAJCA (U1 small nuclear ribonucleoprotein A OS=Cajanus cajan GN=KK1_011134 PE=4 SV=1)

HSP 1 Score: 396.4 bits (1017), Expect = 2.6e-107
Identity = 201/246 (81.71%), Postives = 225/246 (91.46%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           M+EVN++  E+P N TIYINNLNEKIK++ELKKSL AVF+QFGKILEVLAFKTLKHKGQA
Sbjct: 1   MSEVNASP-EIPQNNTIYINNLNEKIKIDELKKSLKAVFTQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFE+VSSA+N++RQMQGFPFYDKPMRIQYAKTKSDI+AK+DGTFVPREKRKRH +KG+
Sbjct: 61  WVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIVAKADGTFVPREKRKRHDDKGK 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHS--QVPYPGGV--MVPEAPAPPNSILFIQNLP 180
           K+K+QHD N AGMGLNPA+SGAYGAT  S  Q+PYPGG   MVPEAPAPPN+ILFIQNLP
Sbjct: 121 KRKDQHDANLAGMGLNPAYSGAYGATPASLPQIPYPGGAKSMVPEAPAPPNNILFIQNLP 180

Query: 181 QETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSML 240
            E+TP MLQMLF QYPGF+EVRMVE KPGIAFVEYGDE+QSTVAMQALQGFK+ PQN ML
Sbjct: 181 NESTPMMLQMLFLQYPGFREVRMVETKPGIAFVEYGDEMQSTVAMQALQGFKITPQNPML 240

Query: 241 ITYAKK 243
           ITYAKK
Sbjct: 241 ITYAKK 245

[Close]
BLAST of CmoCh14G009350 vs. TrEMBL
Match: A0A0V0HLS5_SOLCH (Putative U1 small nuclear ribonucleoprotein A-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.3e-106
Identity = 201/253 (79.45%), Postives = 224/253 (88.54%), Query Frame = 1 

Query: 1   MAEVNS--------TGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFK 60
           MAE N         +G E P N+TIYINNLNEKIKLEELKKS++AVFSQFGKILEVLAFK
Sbjct: 1   MAEANQNTNPNPAPSGGEAPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFK 60

Query: 61  TLKHKGQAWVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKR 120
           TLKHKGQAWVVFEEVSSA+N++RQMQGFPFYDKPMRIQYAKTKSD++AK+DGTFVPREKR
Sbjct: 61  TLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKR 120

Query: 121 KRHGEKGRKKKEQHDTNQAGMGLNPAFSGAYGAT-GHSQVPYPGG--VMVPEAPAPPNSI 180
           KRH +KGRKKK+Q D+NQAGMGLNPA++GAYGA    SQ+PY GG    VPEAPAPPNSI
Sbjct: 121 KRHEDKGRKKKDQQDSNQAGMGLNPAYAGAYGAAPPFSQIPYVGGAKAAVPEAPAPPNSI 180

Query: 181 LFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKM 240
           LF+QNLP ++TP MLQMLFCQYPGFKEVRMVEAKPGIAF+EYGDE+QSTVAMQALQGFK+
Sbjct: 181 LFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKI 240

Query: 241 NPQNSMLITYAKK 243
             +N MLITYAKK
Sbjct: 241 TAENPMLITYAKK 253

[Close]
BLAST of CmoCh14G009350 vs. TrEMBL
Match: M1D4N8_SOLTU (Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031814 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 1.3e-106
Identity = 201/253 (79.45%), Postives = 224/253 (88.54%), Query Frame = 1 

Query: 1   MAEVNS--------TGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFK 60
           MAE N         +G E P N+TIYINNLNEKIKLEELKKS++AVFSQFGKILEVLAFK
Sbjct: 1   MAEANQNTNPNPAPSGGEAPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFK 60

Query: 61  TLKHKGQAWVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKR 120
           TLKHKGQAWVVFEEVSSA+N++RQMQGFPFYDKPMRIQYAKTKSD++AK+DGTFVPREKR
Sbjct: 61  TLKHKGQAWVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKR 120

Query: 121 KRHGEKGRKKKEQHDTNQAGMGLNPAFSGAYGAT-GHSQVPYPGG--VMVPEAPAPPNSI 180
           KRH +KGRKKK+Q D+NQAGMGLNPA++GAYGA    SQ+PY GG    VPEAPAPPNSI
Sbjct: 121 KRHEDKGRKKKDQQDSNQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSI 180

Query: 181 LFIQNLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKM 240
           LF+QNLP ++TP MLQMLFCQYPGFKEVRMVEAKPGIAF+EYGDE+QSTVAMQALQGFK+
Sbjct: 181 LFVQNLPHQSTPMMLQMLFCQYPGFKEVRMVEAKPGIAFIEYGDEMQSTVAMQALQGFKI 240

Query: 241 NPQNSMLITYAKK 243
             +N MLITYAKK
Sbjct: 241 TAENPMLITYAKK 253

[Close]
BLAST of CmoCh14G009350 vs. TAIR10
Match: AT2G47580.1 (AT2G47580.1 spliceosomal protein U1A)

HSP 1 Score: 344.0 bits (881), Expect = 7.7e-95
Identity = 180/249 (72.29%), Postives = 205/249 (82.33%), Query Frame = 1 

Query: 1   MAEVNSTG-NEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQ 60
           M E N  G +EV  N TIYINNLNEK+KL+ELKKSLNAVFSQFGKILE+LAFKT KHKGQ
Sbjct: 3   MQEANQGGGSEVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQ 62

Query: 61  AWVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKG 120
           AWVVF+   SA+ +I +M  FPFYDK MRIQYAKTKSD++AK+DGTFVPREKRKRH EKG
Sbjct: 63  AWVVFDNTESASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKG 122

Query: 121 ---RKKKEQHDTNQAGMGLNPAFSGAYGATGH-SQVPYPGGVM--VPEAPAPPNSILFIQ 180
              +KK + HD+ Q GM +N A+ G YGA    SQVPYPGG+   +PEAPAPPN+ILF+Q
Sbjct: 123 GGKKKKDQHHDSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQ 182

Query: 181 NLPQETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQN 240
           NLP ETTP +LQMLFCQY GFKEVRM+EAKPGIAFVE+ DE+QSTVAMQ LQGFK+  QN
Sbjct: 183 NLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QN 242

Query: 241 SMLITYAKK 243
            MLITYAKK
Sbjct: 243 QMLITYAKK 250

[Close]
BLAST of CmoCh14G009350 vs. TAIR10
Match: AT2G30260.1 (AT2G30260.1 U2 small nuclear ribonucleoprotein B)

HSP 1 Score: 264.6 bits (675), Expect = 5.9e-71
Identity = 134/233 (57.51%), Postives = 180/233 (77.25%), Query Frame = 1 

Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI NLNE+IK EELK+SL  +FSQFG+IL+V+A KT K +GQAWV F EV++
Sbjct: 5   DIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFSEVTA 64

Query: 70  ATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A +++RQMQ FPFYDKPMR+QYAK KSD +AK++GTFVP++K+++  EK  +K+E  D+ 
Sbjct: 65  AGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRE--DSQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           +      P+   A G + ++ VP P      +   PPN+ILFIQNLP ETT  MLQ+LF 
Sbjct: 125 RPNTANGPS---ANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM++AKPGIAFVEY D+VQ+++AMQ LQGFK+ PQN M+I++AKK
Sbjct: 185 QYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232

[Close]
BLAST of CmoCh14G009350 vs. TAIR10
Match: AT1G06960.1 (AT1G06960.1 RNA-binding (RRM/RBD/RNP motifs) family protein)

HSP 1 Score: 264.2 bits (674), Expect = 7.7e-71
Identity = 134/233 (57.51%), Postives = 177/233 (75.97%), Query Frame = 1 

Query: 10  EVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
           ++P N +IYI ++NEKIK EELK+SL  +FSQFG++L+V+A KT K +GQAWVVF EV++
Sbjct: 5   DIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFTEVTA 64

Query: 70  ATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKEQHDTN 129
           A+N++RQMQ FPFYDKPMRIQYAK+KSD + K++G+FVP+EK+ +  EK  +K+   +T 
Sbjct: 65  ASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHAEETQ 124

Query: 130 QAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTMLQMLFC 189
           Q  M          GAT  + +P P      +   PPN+ILFI NLP ET   MLQ+LF 
Sbjct: 125 QPSM--------PNGATTQNGMPVPPFQPSGQDTMPPNNILFIHNLPIETNSMMLQLLFE 184

Query: 190 QYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           QYPGFKE+RM+EAKPGIAFVEY D+VQS++AMQALQGFK+ PQN M++++AKK
Sbjct: 185 QYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229

[Close]
BLAST of CmoCh14G009350 vs. NCBI nr
Match: gi|659108679|ref|XP_008454331.1| (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo])

HSP 1 Score: 454.9 bits (1169), Expect = 8.7e-125
Identity = 229/242 (94.63%), Postives = 234/242 (96.69%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATN++RQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CmoCh14G009350 vs. NCBI nr
Match: gi|778689323|ref|XP_011652939.1| (PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis sativus])

HSP 1 Score: 451.1 bits (1159), Expect = 1.3e-123
Identity = 227/242 (93.80%), Postives = 233/242 (96.28%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAEV +TGNEVP NMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAEVTTTGNEVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSATN++RQMQGFPFYDKPMRIQYAKTKSDIIAKSDG+FVPREKRKRH EKGR
Sbjct: 61  WVVFEEVSSATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGR 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGVMVPEAPAPPNSILFIQNLPQETT 180
           KKKEQHD NQAGMGLNPAF+GAYGAT HSQVPY GGVMVPEAPAPPNSILF+QNLP ETT
Sbjct: 121 KKKEQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETT 180

Query: 181 PTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYA 240
           P MLQMLFCQYPGFKEVRMVEAKPGIAFVEY DEVQSTVAMQALQGFKMNPQNSMLITYA
Sbjct: 181 PMMLQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYA 240

Query: 241 KK 243
           KK
Sbjct: 241 KK 242

[Close]
BLAST of CmoCh14G009350 vs. NCBI nr
Match: gi|645258908|ref|XP_008235108.1| (PREDICTED: U1 small nuclear ribonucleoprotein A [Prunus mume])

HSP 1 Score: 402.1 bits (1032), Expect = 6.7e-109
Identity = 198/239 (82.85%), Postives = 225/239 (94.14%), Query Frame = 1 

Query: 5   NSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVF 64
           N++G+EVP+N TIYINNLNEKIKL+ELKKSL AVFSQFGKIL+VLAFKTLKHKGQAW+VF
Sbjct: 4   NNSGSEVPANQTIYINNLNEKIKLDELKKSLLAVFSQFGKILDVLAFKTLKHKGQAWLVF 63

Query: 65  EEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGRKKKE 124
           E+VSSAT +I+QMQGFPFYDKPMRIQYAKTKSD+IAK+DGTFVPRE+RKRH +KG+K+KE
Sbjct: 64  EDVSSATKAIQQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRKRHEDKGKKRKE 123

Query: 125 QHDTNQAGMGLNPAFSGAYGATGH-SQVPYPGGVMVPEAPAPPNSILFIQNLPQETTPTM 184
           QHD +QAGMG+NPA++GAYGA    SQ+PYPGGV +PEAPAPPN+ILF+QNLPQ+TTP M
Sbjct: 124 QHDASQAGMGVNPAYAGAYGAAPPLSQIPYPGGVKLPEAPAPPNNILFVQNLPQDTTPMM 183

Query: 185 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLITYAKK 243
           LQMLFCQYPGFKEVRMVE KPGIAFVE+GDE+QSTVAMQALQ FKM PQNSMLITYAKK
Sbjct: 184 LQMLFCQYPGFKEVRMVETKPGIAFVEFGDEMQSTVAMQALQDFKMTPQNSMLITYAKK 242

[Close]
BLAST of CmoCh14G009350 vs. NCBI nr
Match: gi|951071985|ref|XP_014491470.1| (PREDICTED: U1 small nuclear ribonucleoprotein A [Vigna radiata var. radiata])

HSP 1 Score: 401.0 bits (1029), Expect = 1.5e-108
Identity = 203/244 (83.20%), Postives = 225/244 (92.21%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           M+EVN+T  E+P N TIYINNLNEKIK++ELKKSLNAVF+QFGKILEVLAFKTLKHKGQA
Sbjct: 1   MSEVNATP-EIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFEEVSSA+N++RQMQGFPFYDKPMRIQYAKTKSD+IAK+DGTFVPREKRKRH +KG+
Sbjct: 61  WVVFEEVSSASNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPREKRKRHDDKGK 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGHSQVPYPGGV--MVPEAPAPPNSILFIQNLPQE 180
           K+K+QHD N AGMGLNPA+SGAYGAT    +PYPGG   MVPEAPAPPN+ILFIQNLP E
Sbjct: 121 KRKDQHDANLAGMGLNPAYSGAYGAT--PMIPYPGGAKSMVPEAPAPPNNILFIQNLPNE 180

Query: 181 TTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLIT 240
           +TP MLQMLF QYPGFKEVRMVEAKPGIAFVEYGDE+QSTVAMQ+LQGFK+ PQN MLIT
Sbjct: 181 STPMMLQMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQSLQGFKITPQNPMLIT 240

Query: 241 YAKK 243
           YAKK
Sbjct: 241 YAKK 241

[Close]
BLAST of CmoCh14G009350 vs. NCBI nr
Match: gi|1009148364|ref|XP_015891898.1| (PREDICTED: U1 small nuclear ribonucleoprotein A [Ziziphus jujuba])

HSP 1 Score: 399.4 bits (1025), Expect = 4.4e-108
Identity = 206/245 (84.08%), Postives = 225/245 (91.84%), Query Frame = 1 

Query: 1   MAEVNSTGNEVPSNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQA 60
           MAE N+ G E+  NMTIYINNLNEKIKLEELKKSL+AVFSQFGKILEVLAFKTLKHKGQA
Sbjct: 1   MAE-NNGGTEISPNMTIYINNLNEKIKLEELKKSLHAVFSQFGKILEVLAFKTLKHKGQA 60

Query: 61  WVVFEEVSSATNSIRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPREKRKRHGEKGR 120
           WVVFE+VSSA+N++RQMQGFPFYDKPMRIQYAKTKSDIIAK+DGTFVPREKRKRH  +G+
Sbjct: 61  WVVFEDVSSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRH--EGK 120

Query: 121 KKKEQHDTNQAGMGLNPAFSGAYGATGH-SQVPYPGGV--MVPEAPAPPNSILFIQNLPQ 180
           K+KEQHD NQAGMGLNPA++GAYG+T   SQ+PYPGGV  MVPEAPAPPN+ILF+QNLP 
Sbjct: 121 KRKEQHDPNQAGMGLNPAYAGAYGSTPPLSQIPYPGGVKPMVPEAPAPPNNILFVQNLPH 180

Query: 181 ETTPTMLQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEVQSTVAMQALQGFKMNPQNSMLI 240
           ETTP MLQMLFCQYPGFKEVRM+E KPGIAFVEY DE+QSTVAMQ LQGFKM  QNSMLI
Sbjct: 181 ETTPMMLQMLFCQYPGFKEVRMIETKPGIAFVEYADEMQSTVAMQGLQGFKMTQQNSMLI 240

Query: 241 TYAKK 243
           TYAKK
Sbjct: 241 TYAKK 242

The following BLAST results are available for this feature:
BLAST of CmoCh14G009350 vs. Swiss-Prot
Match NameE-valueIdentityDescription
RU1A_ARATH1.4e-9372.29U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1[more]
RU1A_ORYSJ5.9e-8972.38U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. japonica GN=Os05g015... [more]
RU1A_ORYSI5.9e-8972.38U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica GN=OsI_18512 ... [more]
RU2B1_ARATH1.0e-6957.51U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana GN=U2B'' PE=1 SV=... [more]
RU2B2_ARATH1.4e-6957.51U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana GN=At1g06960 PE... [more]
BLAST of CmoCh14G009350 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0KWK4_CUCSA8.8e-12493.80Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001840 PE=4 SV=1[more]
A0A0L9VLC5_PHAAN8.8e-10883.20Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g159400 PE=4 SV=1[more]
A0A151TXR0_CAJCA2.6e-10781.71U1 small nuclear ribonucleoprotein A OS=Cajanus cajan GN=KK1_011134 PE=4 SV=1[more]
A0A0V0HLS5_SOLCH1.3e-10679.45Putative U1 small nuclear ribonucleoprotein A-like OS=Solanum chacoense PE=4 SV=... [more]
M1D4N8_SOLTU1.3e-10679.45Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400031814 PE=4 SV=1[more]
BLAST of CmoCh14G009350 vs. TAIR10
Match NameE-valueIdentityDescription
AT2G47580.17.7e-9572.29 spliceosomal protein U1A[more]
AT2G30260.15.9e-7157.51 U2 small nuclear ribonucleoprotein B[more]
AT1G06960.17.7e-7157.51 RNA-binding (RRM/RBD/RNP motifs) family protein[more]
BLAST of CmoCh14G009350 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659108679|ref|XP_008454331.1|8.7e-12594.63PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis melo][more]
gi|778689323|ref|XP_011652939.1|1.3e-12393.80PREDICTED: U1 small nuclear ribonucleoprotein A [Cucumis sativus][more]
gi|645258908|ref|XP_008235108.1|6.7e-10982.85PREDICTED: U1 small nuclear ribonucleoprotein A [Prunus mume][more]
gi|951071985|ref|XP_014491470.1|1.5e-10883.20PREDICTED: U1 small nuclear ribonucleoprotein A [Vigna radiata var. radiata][more]
gi|1009148364|ref|XP_015891898.1|4.4e-10884.08PREDICTED: U1 small nuclear ribonucleoprotein A [Ziziphus jujuba][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000504RRM_dom
IPR012677Nucleotide-bd_a/b_plait_sf
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0000166nucleotide binding
GO:0017069snRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0000398mRNA splicing, via spliceosome
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0000398 mRNA splicing, via spliceosome
biological_process GO:0009651 response to salt stress
biological_process GO:0008150 biological_process
cellular_component GO:0030529 intracellular ribonucleoprotein complex
cellular_component GO:0019013 viral nucleocapsid
cellular_component GO:0005829 cytosol
cellular_component GO:0005685 U1 snRNP
cellular_component GO:0005575 cellular_component
molecular_function GO:0000166 nucleotide binding
molecular_function GO:0017069 snRNA binding
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G009350.1CmoCh14G009350.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000504RNA recognition motif domainPFAMPF00076RRM_1coord: 170..230
score: 1.9E-12coord: 17..87
score: 1.
IPR000504RNA recognition motif domainSMARTSM00360rrm1_1coord: 169..238
score: 1.3E-9coord: 16..90
score: 4.5
IPR000504RNA recognition motif domainPROFILEPS50102RRMcoord: 15..94
score: 14.061coord: 168..242
score: 12
IPR012677Nucleotide-binding alpha-beta plait domainGENE3DG3DSA:3.30.70.330coord: 161..241
score: 7.1E-21coord: 10..97
score: 3.8
IPR012677Nucleotide-binding alpha-beta plait domainunknownSSF54928RNA-binding domain, RBDcoord: 13..104
score: 5.46E-26coord: 165..232
score: 5.46
IPR024888U1 small nuclear ribonucleoprotein A/U2 small nuclear ribonucleoprotein B''PANTHERPTHR10501U1 SMALL NUCLEAR RIBONUCLEOPROTEIN A/U2 SMALL NUCLEAR RIBONUCLEOPROTEIN Bcoord: 1..242
score: 5.3E
NoneNo IPR availablePANTHERPTHR10501:SF17U1 SMALL NUCLEAR RIBONUCLEOPROTEIN Acoord: 1..242
score: 5.3E

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G009350CmaCh01G003080Cucurbita maxima (Rimu)cmacmoB462
CmoCh14G009350CmaCh14G009080Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G009350Cla017402Watermelon (97103) v1cmowmB213
CmoCh14G009350Csa4G001840Cucumber (Chinese Long) v2cmocuB246
CmoCh14G009350MELO3C017951Melon (DHL92) v3.5.1cmomeB233
CmoCh14G009350ClCG10G011010Watermelon (Charleston Gray)cmowcgB206
CmoCh14G009350CSPI04G00900Wild cucumber (PI 183967)cmocpiB251
CmoCh14G009350Lsi03G010800Bottle gourd (USVL1VR-Ls)cmolsiB228
CmoCh14G009350Cp4.1LG02g16270Cucurbita pepo (Zucchini)cmocpeB241
CmoCh14G009350Cp4.1LG03g05310Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G009350MELO3C017951.2Melon (DHL92) v3.6.1cmomedB265
CmoCh14G009350CsaV3_4G000860Cucumber (Chinese Long) v3cmocucB0292
CmoCh14G009350Cla97C10G193920Watermelon (97103) v2cmowmbB229
CmoCh14G009350Carg07400Silver-seed gourdcarcmoB1031
CmoCh14G009350Carg11139Silver-seed gourdcarcmoB1102
The following gene(s) are paralogous to this gene:
GeneParalogueOrganismBlock
CmoCh14G009350CmoCh01G003200Cucurbita moschata (Rifu)cmocmoB203
The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G009350Silver-seed gourdcarcmoB0095
CmoCh14G009350Silver-seed gourdcarcmoB0151
CmoCh14G009350Watermelon (97103) v2cmowmbB250
CmoCh14G009350Wax gourdcmowgoB0279
CmoCh14G009350Cucurbita moschata (Rifu)cmocmoB196
CmoCh14G009350Cucurbita moschata (Rifu)cmocmoB199
CmoCh14G009350Cucurbita moschata (Rifu)cmocmoB232
CmoCh14G009350Cucumber (Gy14) v1cgycmoB0187
CmoCh14G009350Cucumber (Gy14) v1cgycmoB0607
CmoCh14G009350Cucurbita maxima (Rimu)cmacmoB351
CmoCh14G009350Cucurbita pepo (Zucchini)cmocpeB224
CmoCh14G009350Cucurbita pepo (Zucchini)cmocpeB232
CmoCh14G009350Cucumber (Gy14) v2cgybcmoB456