CmoCh14G009120 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G009120
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 4837887 .. 4838652 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTTGATCTCCCAATCCTAATTTATTTTAGTTATTTATTTTTCCGTTTATAACTATTTTGGTTAATATTCTTATTTTGATGCATGAATCATCTTGATTCATTTATGAGTATTAATGTTGCTATGCTTCTATAAAGGCTAGTCTAGCATTATTTTGAGACGTGAAGTCATTGTCATTTTACATTTGCTTAAAGACAAATGTAAACTTTTGTAGTGTGATAGCATTGGTTATAGTGATTGGCTACCACCCGTGGATGTAGAAAAAATTCTCATCTTCGAACCAACCACATAAATATTTGTGTTTCTTTATTTAATTTCTGTTTGTGGGTGTGTGAATATGATCGATTTTGCTTCTGCTTCTACTCCAACCATTGATATTTGGTATCGAGTGGCATTTATGGACATGTAGGAAGTATGGTTTTTTCCTAATTGGTGCTAATTTATTGTGCAATGTAGGCTGTCTGGGCGGGACAGATAAGTCAACAGCATCTTATGATCAATTTACGGCAGAGAGTGGAGCCGCCATTGCCGAGATTAATAGGCAACATAATCTCACACTGCATAGCATTGGAGACCACGGGGGAGCAGAGGGAGAAGGAGGTATGGGACATAGTGGGAGACATAAAGATAAACTTAAAGGTGTACTGTGAGAAGTTCCCAAGCGATTATAGAGATGAAGAATGGGGTTGGCTTTATAAATTACATGCGAAACAATCAATGGAGAGGCCAAAAAATGAAGGGGATGTGGCGGGTGATTTCATGTAG

mRNA sequence

ATGGCTGTCTGGGCGGGACAGATAAGTCAACAGCATCTTATGATCAATTTACGGCAGAGAGTGGAGCCGCCATTGCCGAGATTAATAGGCAACATAATCTCACACTGCATAGCATTGGAGACCACGGGGGAGCAGAGGGAGAAGGAGGTATGGGACATAGTGGGAGACATAAAGATAAACTTAAAGGTGTACTGTGAGAAGTTCCCAAGCGATTATAGAGATGAAGAATGGGGTTGGCTTTATAAATTACATGCGAAACAATCAATGGAGAGGCCAAAAAATGAAGGGGATGTGGCGGGTGATTTCATGTAG

Coding sequence (CDS)

ATGGCTGTCTGGGCGGGACAGATAAGTCAACAGCATCTTATGATCAATTTACGGCAGAGAGTGGAGCCGCCATTGCCGAGATTAATAGGCAACATAATCTCACACTGCATAGCATTGGAGACCACGGGGGAGCAGAGGGAGAAGGAGGTATGGGACATAGTGGGAGACATAAAGATAAACTTAAAGGTGTACTGTGAGAAGTTCCCAAGCGATTATAGAGATGAAGAATGGGGTTGGCTTTATAAATTACATGCGAAACAATCAATGGAGAGGCCAAAAAATGAAGGGGATGTGGCGGGTGATTTCATGTAG

Homology

[Close]

BLAST of CmoCh14G009120 vs. TrEMBL
Match: A0A0A0KT83_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001550 PE=4 SV=1)

HSP 1 Score: 95.5 bits (236), Expect = 4.0e-17
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 14  MINLRQRVEPPLPR-LIGNIISHCIALETTGEQREKEVWDIVGDIKINLKVYCEKFPSDY 73
           +INLR RV+PPLP  L GN+IS  I L    E++E E+W++VG+ K N + +C+ FP++Y
Sbjct: 217 IINLRNRVDPPLPATLSGNVISWFIGLSRMPEKKEMELWNLVGETKRNFEEFCKTFPTNY 276

Query: 74  RDEEWGWLYKLHAKQSME 91
           R EEWG L+KLHAK+SME
Sbjct: 277 RAEEWGLLHKLHAKESME 294

[Close]

BLAST of CmoCh14G009120 vs. TrEMBL
Match: A0A0A0KV47_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001560 PE=4 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 1.9e-14
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 13  LMINLRQRVEPPLPR-LIGNIISHCI-ALETTGEQREKEVWDIVGDIKINLKVYCEKFPS 72
           + INLR R+ PP+P  L GNIIS  + +  TT EQ+E E+  ++ D+K N+K +C K+P 
Sbjct: 278 IAINLRTRLIPPMPATLSGNIISFFLTSATTTAEQKEIELSSLLSDMKRNMKEFCNKYPR 337

Query: 73  DYRDEEWGWLYKLHAKQSMERPKNEGD 98
           +Y+ EEW  LYKLH K+SMER  N  D
Sbjct: 338 NYKAEEWSSLYKLHIKESMERMNNPED 364

[Close]

BLAST of CmoCh14G009120 vs. NCBI nr
Match: gi|659109007|ref|XP_008454499.1| (PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis melo])

HSP 1 Score: 103.2 bits (256), Expect = 2.7e-19
Identity = 51/85 (60.00%), Postives = 62/85 (72.94%), Query Frame = 1


Query: 15  INLRQRVEPPLPR-LIGNIISHCIALETTGEQREKEVWDIVGDIKINLKVYCEKFPSDYR 74
           INLR RV+PPLP  L GN+IS  I L  T E+RE E+W++VGD K N + YC+ FP+DYR
Sbjct: 282 INLRNRVDPPLPATLSGNVISWFIGLSRTQEKREMELWNLVGDTKRNFEEYCKTFPTDYR 341

Query: 75  DEEWGWLYKLHAKQSME-RPKNEGD 98
            EEWG L +LHAK+SME R  NE D
Sbjct: 342 SEEWGLLQRLHAKESMEDRMINEED 366

[Close]

BLAST of CmoCh14G009120 vs. NCBI nr
Match: gi|700197630|gb|KGN52788.1| (hypothetical protein Csa_4G001550 [Cucumis sativus])

HSP 1 Score: 95.5 bits (236), Expect = 5.7e-17
Identity = 43/78 (55.13%), Postives = 59/78 (75.64%), Query Frame = 1


Query: 14  MINLRQRVEPPLPR-LIGNIISHCIALETTGEQREKEVWDIVGDIKINLKVYCEKFPSDY 73
           +INLR RV+PPLP  L GN+IS  I L    E++E E+W++VG+ K N + +C+ FP++Y
Sbjct: 217 IINLRNRVDPPLPATLSGNVISWFIGLSRMPEKKEMELWNLVGETKRNFEEFCKTFPTNY 276

Query: 74  RDEEWGWLYKLHAKQSME 91
           R EEWG L+KLHAK+SME
Sbjct: 277 RAEEWGLLHKLHAKESME 294

[Close]

BLAST of CmoCh14G009120 vs. NCBI nr
Match: gi|778697396|ref|XP_011654313.1| (PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis sativus])

HSP 1 Score: 90.5 bits (223), Expect = 1.8e-15
Identity = 40/77 (51.95%), Postives = 57/77 (74.03%), Query Frame = 1


Query: 15  INLRQRVEPPLPR-LIGNIISHCIALETTGEQREKEVWDIVGDIKINLKVYCEKFPSDYR 74
           IN + +V+PPLP  L GN+IS  I L    E++E E+W++VG+ K N + +C+ FP++YR
Sbjct: 231 INFKLKVDPPLPATLSGNVISWFIGLSRMPEKKEMELWNLVGETKRNFEEFCKTFPTNYR 290

Query: 75  DEEWGWLYKLHAKQSME 91
            EEWG L+KLHAK+SME
Sbjct: 291 AEEWGLLHKLHAKESME 307

[Close]

BLAST of CmoCh14G009120 vs. NCBI nr
Match: gi|778697399|ref|XP_004152371.2| (PREDICTED: vinorine synthase-like [Cucumis sativus])

HSP 1 Score: 86.7 bits (213), Expect = 2.7e-14
Identity = 43/87 (49.43%), Postives = 59/87 (67.82%), Query Frame = 1


Query: 13  LMINLRQRVEPPLPR-LIGNIISHCI-ALETTGEQREKEVWDIVGDIKINLKVYCEKFPS 72
           + INLR R+ PP+P  L GNIIS  + +  TT EQ+E E+  ++ D+K N+K +C K+P 
Sbjct: 278 IAINLRTRLIPPMPATLSGNIISFFLTSATTTAEQKEIELSSLLSDMKRNMKEFCNKYPR 337

Query: 73  DYRDEEWGWLYKLHAKQSMERPKNEGD 98
           +Y+ EEW  LYKLH K+SMER  N  D
Sbjct: 338 NYKAEEWSSLYKLHIKESMERMNNPED 364

The following BLAST results are available for this feature:

BLAST of CmoCh14G009120 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G009120 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KT83_CUCSA	4.0e-17	55.13	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001550 PE=4 SV=1	[more]
A0A0A0KV47_CUCSA	1.9e-14	49.43	Uncharacterized protein OS=Cucumis sativus GN=Csa_4G001560 PE=4 SV=1	[more]

BLAST of CmoCh14G009120 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G009120 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659109007\|ref\|XP_008454499.1\|	2.7e-19	60.00	PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis melo]	[more]
gi\|700197630\|gb\|KGN52788.1\|	5.7e-17	55.13	hypothetical protein Csa_4G001550 [Cucumis sativus]	[more]
gi\|778697396\|ref\|XP_011654313.1\|	1.8e-15	51.95	PREDICTED: BAHD acyltransferase At5g47980-like [Cucumis sativus]	[more]
gi\|778697399\|ref\|XP_004152371.2\|	2.7e-14	49.43	PREDICTED: vinorine synthase-like [Cucumis sativus]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003480	Transferase
IPR023213	CAT-like_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G009120.1	CmoCh14G009120.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003480	Transferase	PFAM	PF02458	Transferase	coord: 12..94 score: 1.
IPR023213	Chloramphenicol acetyltransferase-like domain	GENE3D	G3DSA:3.30.559.10		coord: 10..62 score: 7.

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G009120	Bhi11G000982	Wax gourd	cmowgoB0279

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G009120	Cucumber (Chinese Long) v3	cmocucB0292
CmoCh14G009120	Watermelon (97103) v2	cmowmbB229
CmoCh14G009120	Cucurbita moschata (Rifu)	cmocmoB199
CmoCh14G009120	Cucurbita moschata (Rifu)	cmocmoB203
CmoCh14G009120	Cucumber (Gy14) v1	cgycmoB0187
CmoCh14G009120	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G009120	Cucurbita maxima (Rimu)	cmacmoB351
CmoCh14G009120	Cucurbita maxima (Rimu)	cmacmoB462
CmoCh14G009120	Wild cucumber (PI 183967)	cmocpiB251
CmoCh14G009120	Cucumber (Chinese Long) v2	cmocuB246
CmoCh14G009120	Melon (DHL92) v3.5.1	cmomeB233
CmoCh14G009120	Watermelon (Charleston Gray)	cmowcgB206
CmoCh14G009120	Watermelon (Charleston Gray)	cmowcgB209
CmoCh14G009120	Watermelon (97103) v1	cmowmB213
CmoCh14G009120	Cucurbita pepo (Zucchini)	cmocpeB224
CmoCh14G009120	Cucurbita pepo (Zucchini)	cmocpeB241
CmoCh14G009120	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G009120	Bottle gourd (USVL1VR-Ls)	cmolsiB228
CmoCh14G009120	Cucumber (Gy14) v2	cgybcmoB456
CmoCh14G009120	Melon (DHL92) v3.6.1	cmomedB265
CmoCh14G009120	Silver-seed gourd	carcmoB0151
CmoCh14G009120	Silver-seed gourd	carcmoB1031