CmoCh14G007360 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G007360
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Descriptionphotosynthetic electron transfer B chrC:74841-76292 FORWARD
LocationCmo_Chr14 : 3766124 .. 3767677 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTAAGTAGCAGACTTCCATGAATGGCTGTAACGAATTGTCAGGATTATGTCTTTACTTTCTGATTAGTCCAATGTGTTTGTTCATGGTTACGGGTTATTTTAGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGTAGATACACAGCAAAAGAAGCCTATATATTTTCAGTAGATTTGATTGAAAGTGCAAGCATGCACTCACTACACGACATTTTGAATATCATGTTGCATATCATGTTGTCAAAATTTAACTAATGGACTAAACAGAGGAGAGACCTAGCCTACGAGTTTACGTCCATCCCTTGGTCGGGTACAGTTTTCTTTCTCTTTTTCCAACAATCTCTTCTAATGACAGAATTGATGCCGAACTCTCAAATTCTGCACTTTTCAGCTGAGAAACAGAGACACAAGGATACCAATATGGAGTGTCGTTATCAATTTGCTCATCGTTTCACTCGAAATAGTATAGAAGCTAAACTCGCACATATAAATAAATTTTCTGGTAAAGATGAGTTCAAGCTTTAAAATTCCACCTCAGTCTTCAAGTCTGCATTCAATTTTTTTCTTTTTAGGAGCTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACGTAAGTCCTTTATAGAGAATCGAAATCATAAAGACTACGTTGCAACAAACTTGTAGAAATGAACCATCAGACCGATAAATAGAGCTGAGGTTAGAGTTAAAACTGCTAGTAGAAAACCGAAAAATCGTTATTGTAAAATGAACTCACTTTCCCAGGACAGGATACGCTAAATCCTGCATCTATTGAAGAAACAAAGATACACATAAGCATAAATGTTTTAGATCAATGGGTTATTTTGCTAATGCTCTCTTTGATGACAATTTTGTATTGAATTTTTGGTTTTAATCTTGTTTTCCAAAAGTTGATTACAAATGATCAAAAACAAAGAGTAATGTACTAGAAAAGACTGACCAAAAACATCCAGAATATAAGAACGCATTAAAGCACCAAAGTTCCATCAGAAACCTCCTACTTGATTAACAAATTCTTATGGTCTGTAAAACCCAGAAAGAACCTAAAAAGAGAAGGTTAAGAACACAGCTAGCAGAGTGAAGTTCCCTGCAAAAAGTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATTGAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATCGCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA

mRNA sequence

ATGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGAGCTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATTGAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATCGCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA

Coding sequence (CDS)

ATGAGTAATAAAGGAACAAGTTTTGGGTTCGTCATCGGGATGAAGATTATATTTACTGCCCTTTCCTTAATGCTGTCAAGCTTTAACGATTGGCAAATTAAAGAGCTAGAGTTATTACGCGGAAGTGCTAGTGTGGGACAATCTACCTTGACTCGTTTTTATAGTTTACACACTTTTGTATTATCACTTCTTACTGCCGTATTTATGTTAATGCACTTCCCAATGATACTTTATCCAAGTGAGAAACAAACAAACCCCATTTTGTTTAAGGTAATAACAAGGAACAACAAAACATCCCTCACAGTTTCAGCAATCTTATTGCGCCATATTGAAGTAGAGCAACAAGAAGACTCACCTGTATCATCCCCGACAGACCCACAATCCATTTCTTCCCATCAAAGGAACGGGGAGCTTCGGCCAATGTCGGGAAAATCACCATCGCCATGGCCAAAAGGAGAGGTAGAAATGGCCCAACAATGGCCCTTGCTGTCTTTGAATAAATGA
Homology
[Close]
BLAST of CmoCh14G007360 vs. Swiss-Prot
Match: CYB6_SACOF (Cytochrome b6 OS=Saccharum officinarum GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. Swiss-Prot
Match: CYB6_CUCSA (Cytochrome b6 OS=Cucumis sativus GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. Swiss-Prot
Match: CYB6_PHAAO (Cytochrome b6 OS=Phalaenopsis aphrodite subsp. formosana GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. Swiss-Prot
Match: CYB6_AGRST (Cytochrome b6 OS=Agrostis stolonifera GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. Swiss-Prot
Match: CYB6_CALFG (Cytochrome b6 OS=Calycanthus floridus var. glaucus GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.1e-12
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. TrEMBL
Match: V5QH76_9ASTR (Cytochrome b6 OS=Helianthus hirsutus GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. TrEMBL
Match: A0A023T0W8_9ROSI (Cytochrome b6 OS=Couepia guianensis GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. TrEMBL
Match: A0A0S2IGD6_CUCPE (Cytochrome b6 OS=Cucurbita pepo var. ozarkana GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 184 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 224

[Close]
BLAST of CmoCh14G007360 vs. TrEMBL
Match: U3R4F4_IPOBA (Cytochrome b6 OS=Ipomoea batatas GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. TrEMBL
Match: A0A141SBU2_9ERIC (Cytochrome b6 OS=Saltugilia australis GN=petB PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.2e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 109 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 149

[Close]
BLAST of CmoCh14G007360 vs. TAIR10
Match: ATCG00720.1 (ATCG00720.1 photosynthetic electron transfer B)

HSP 1 Score: 70.9 bits (172), Expect = 8.6e-13
Identity = 38/41 (92.68%), Postives = 39/41 (95.12%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHF MI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFLMI 206

[Close]
BLAST of CmoCh14G007360 vs. NCBI nr
Match: gi|69217195|gb|AAZ04009.1| (cytochrome b6 [Acorus americanus])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 168 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 208

[Close]
BLAST of CmoCh14G007360 vs. NCBI nr
Match: gi|511369852|gb|AGN74009.1| (cytochrome b6 (chloroplast) [Aconitum barbatum var. puberulum])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 115 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 155

[Close]
BLAST of CmoCh14G007360 vs. NCBI nr
Match: gi|456061585|ref|YP_007475734.1| (cytochrome b6 [Zingiber spectabile])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 168 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 208

[Close]
BLAST of CmoCh14G007360 vs. NCBI nr
Match: gi|169794103|ref|YP_001718467.1| (cytochrome b6 [Manihot esculenta])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

[Close]
BLAST of CmoCh14G007360 vs. NCBI nr
Match: gi|690966641|dbj|BAP59064.1| (cytochrome b6, partial (chloroplast) [Triticum timopheevii])

HSP 1 Score: 74.7 bits (182), Expect = 1.7e-10
Identity = 39/41 (95.12%), Postives = 40/41 (97.56%), Query Frame = 1 

Query: 36  LELLRGSASVGQSTLTRFYSLHTFVLSLLTAVFMLMHFPMI 77
           +ELLRGSASVGQSTLTRFYSLHTFVL LLTAVFMLMHFPMI
Sbjct: 166 VELLRGSASVGQSTLTRFYSLHTFVLPLLTAVFMLMHFPMI 206

The following BLAST results are available for this feature:
BLAST of CmoCh14G007360 vs. Swiss-Prot
Match NameE-valueIdentityDescription
CYB6_SACOF1.1e-1295.12Cytochrome b6 OS=Saccharum officinarum GN=petB PE=3 SV=1[more]
CYB6_CUCSA1.1e-1295.12Cytochrome b6 OS=Cucumis sativus GN=petB PE=3 SV=1[more]
CYB6_PHAAO1.1e-1295.12Cytochrome b6 OS=Phalaenopsis aphrodite subsp. formosana GN=petB PE=3 SV=1[more]
CYB6_AGRST1.1e-1295.12Cytochrome b6 OS=Agrostis stolonifera GN=petB PE=3 SV=1[more]
CYB6_CALFG1.1e-1295.12Cytochrome b6 OS=Calycanthus floridus var. glaucus GN=petB PE=3 SV=1[more]
BLAST of CmoCh14G007360 vs. TrEMBL
Match NameE-valueIdentityDescription
V5QH76_9ASTR1.2e-1095.12Cytochrome b6 OS=Helianthus hirsutus GN=petB PE=3 SV=1[more]
A0A023T0W8_9ROSI1.2e-1095.12Cytochrome b6 OS=Couepia guianensis GN=petB PE=3 SV=1[more]
A0A0S2IGD6_CUCPE1.2e-1095.12Cytochrome b6 OS=Cucurbita pepo var. ozarkana GN=petB PE=3 SV=1[more]
U3R4F4_IPOBA1.2e-1095.12Cytochrome b6 OS=Ipomoea batatas GN=petB PE=3 SV=1[more]
A0A141SBU2_9ERIC1.2e-1095.12Cytochrome b6 OS=Saltugilia australis GN=petB PE=3 SV=1[more]
BLAST of CmoCh14G007360 vs. TAIR10
Match NameE-valueIdentityDescription
ATCG00720.18.6e-1392.68ATCG00720.1 photosynthetic electron transfer B[more]
BLAST of CmoCh14G007360 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|69217195|gb|AAZ04009.1|1.7e-1095.12cytochrome b6 [Acorus americanus][more]
gi|511369852|gb|AGN74009.1|1.7e-1095.12cytochrome b6 (chloroplast) [Aconitum barbatum var. puberulum][more]
gi|456061585|ref|YP_007475734.1|1.7e-1095.12cytochrome b6 [Zingiber spectabile][more]
gi|169794103|ref|YP_001718467.1|1.7e-1095.12cytochrome b6 [Manihot esculenta][more]
gi|690966641|dbj|BAP59064.1|1.7e-1095.12cytochrome b6, partial (chloroplast) [Triticum timopheevii][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR005797Cyt_b/b6_N
IPR016174Di-haem_cyt_TM
IPR027387Cytb/b6-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0009055electron carrier activity
GO:0016491oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0022904respiratory electron transport chain
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015979 photosynthesis
biological_process GO:0022904 respiratory electron transport chain
cellular_component GO:0009535 chloroplast thylakoid membrane
cellular_component GO:0016021 integral component of membrane
cellular_component GO:0016020 membrane
molecular_function GO:0045158 electron transporter, transferring electrons within cytochrome b6/f complex of photosystem II activity
molecular_function GO:0020037 heme binding
molecular_function GO:0005506 iron ion binding
molecular_function GO:0016491 oxidoreductase activity
molecular_function GO:0009055 electron carrier activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G007360.1CmoCh14G007360.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005797Cytochrome b/b6, N-terminalPFAMPF00033Cytochrome_Bcoord: 31..76
score: 2.2
IPR016174Di-haem cytochrome, transmembraneunknownSSF81342Transmembrane di-heme cytochromescoord: 25..78
score: 3.6
IPR027387Cytochrome b/b6-like domainGENE3DG3DSA:1.20.810.10coord: 36..86
score: 7.
NoneNo IPR availablePANTHERPTHR19271CYTOCHROME Bcoord: 36..76
score: 5.0
NoneNo IPR availablePANTHERPTHR19271:SF8CYTOCHROME B6coord: 36..76
score: 5.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G007360Watermelon (97103) v1cmowmB225
CmoCh14G007360Cucurbita pepo (Zucchini)cmocpeB236
CmoCh14G007360Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G007360Cucurbita pepo (Zucchini)cmocpeB250
CmoCh14G007360Cucurbita pepo (Zucchini)cmocpeB251
CmoCh14G007360Bottle gourd (USVL1VR-Ls)cmolsiB239
CmoCh14G007360Bottle gourd (USVL1VR-Ls)cmolsiB243
CmoCh14G007360Cucumber (Gy14) v2cgybcmoB078
CmoCh14G007360Cucumber (Gy14) v2cgybcmoB291
CmoCh14G007360Melon (DHL92) v3.6.1cmomedB235
CmoCh14G007360Melon (DHL92) v3.6.1cmomedB262
CmoCh14G007360Silver-seed gourdcarcmoB0498
CmoCh14G007360Silver-seed gourdcarcmoB0504
CmoCh14G007360Silver-seed gourdcarcmoB0592
CmoCh14G007360Cucumber (Chinese Long) v3cmocucB0261
CmoCh14G007360Cucumber (Chinese Long) v3cmocucB0284
CmoCh14G007360Watermelon (97103) v2cmowmbB240
CmoCh14G007360Watermelon (97103) v2cmowmbB248
CmoCh14G007360Wax gourdcmowgoB0305
CmoCh14G007360Cucurbita moschata (Rifu)cmocmoB056
CmoCh14G007360Cucurbita moschata (Rifu)cmocmoB092
CmoCh14G007360Cucurbita moschata (Rifu)cmocmoB093
CmoCh14G007360Cucumber (Gy14) v1cgycmoB0062
CmoCh14G007360Cucurbita maxima (Rimu)cmacmoB129
CmoCh14G007360Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G007360Wild cucumber (PI 183967)cmocpiB244
CmoCh14G007360Cucumber (Chinese Long) v2cmocuB240
CmoCh14G007360Melon (DHL92) v3.5.1cmomeB225
CmoCh14G007360Watermelon (Charleston Gray)cmowcgB215
CmoCh14G007360Watermelon (Charleston Gray)cmowcgB223