CmoCh14G005760 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G005760
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPentatricopeptide repeat 336, putative
LocationCmo_Chr14 : 2940140 .. 2941084 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGATGGCATCATTCAATCCCACCTCAAATCCCCCTTCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTCTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTTCGATTTGGGTAGTTACAATTACAGGATTTTGAGGCTGTGCAAGAACAAGGAGTGTGCACGGGCCAAGAAATTGCTAGATTAGATGGTTTCAAAGGGTGTGAAGCCCAATTCTAGTAGCTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTGATTTGGCATTGGAGACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGTCTGGTTCGTGGATTGGTGTGTATATCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGACGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

mRNA sequence

ATGGATGGCATCATTCAATCCCACCTCAAATCCCCCTTCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTCTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTTCGATTTGGGTAGTTACAATTACAGGATTTTGAGGCTGTGCAAGAACAAGGACTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTGATTTGGCATTGGAGACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGTCTGGTTCGTGGATTGGTGTGTATATCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGACGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG

Coding sequence (CDS)

ATGGATGGCATCATTCAATCCCACCTCAAATCCCCCTTCGCCATTTCTGAAGGCTTCTGGATCCGCCTCATCATGCTCTACTCCAGCTCCGGTATGGTCGATCAAGCTATTCGCACTCTTGATCAGGTAATCCTGAACAAACCCTGCGATCTGTCAGAGAAATCGCTCTGTGCTGTTCTCTCTGTTTATCTCAACAATTCCATGCCTGAGAAGGTTCATGAGATGTTTAGAACCATTCCGGAGAAAATTGGTGTTACTCCGACTGTGGTTTCGCACAATCTGGTGCTGAAGGCATTTGTTCAGCAAAACGATCTTGAATCGGCTCGGAACTGGATCGATGAGTTGTACAAGGATGATGCTAAGGTCGTCCCTAACATTGACTCGTACAATATCTTCTTAGGAGCTTACTGGAACAAAGGCGATTTGGTCGGATTCGACGGGATTGTGAAGGAAATTTCAAAGAGAGGTTTGGAGTTCGATTTGGGTAGTTACAATTACAGGATTTTGAGGCTGTGCAAGAACAAGGACTATGATGCAATCATCCATGGCTACGGCAATGTTGGGGATATTGAATTGGCTACGAAAGTTCTGAAGAGTATGCTGGAGGATGGCCATGTCTCACCCAGTTCGCGAATCTATTATAGTTTGATTCGAAGCATGGTTAAGGAGGGGGAGTTTGATTTGGCATTGGAGACATGTAGAGAGATCATAAAGAGGAGGTGGGTTCCTCCATTTGAGGCAATGGAGGGTCTGGTTCGTGGATTGGTGTGTATATCAAAGGTTGAAGAGGCAAAAGAGGTTGTTGAAAAGACGAAGAAGATGCTCAAAGGACCTGCTATGGATTCGTGGGGGAAAATTGAAGCTGCTCTTTCGCTGTAG
Homology
[Close]
BLAST of CmoCh14G005760 vs. Swiss-Prot
Match: PPR33_ARATH (Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidopsis thaliana GN=At1g11630 PE=2 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 1.1e-28
Identity = 85/317 (26.81%), Postives = 160/317 (50.47%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRT---LDQVILNKPCDLSEKSLC 60
           +DG IQ+    P   SE F +R I+LY  + M+D++I+T   L+Q  + +    + KSL 
Sbjct: 98  LDGFIQNQ---PDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPR----TVKSLN 157

Query: 61  AVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYK 120
           A+L   L     ++ + ++  +P+  G+ P + ++N +++   +     S+ + + E+ +
Sbjct: 158 ALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMER 217

Query: 121 DDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD- 180
              K  P   S+ + +  ++ +        +++ + + G+   + +YN  I  LCK K  
Sbjct: 218 KWIK--PTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKS 277

Query: 181 ---------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYS 240
                                Y  +IHG+ +  +++ A  + + M+ +G+  P S  Y++
Sbjct: 278 AEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGY-KPDSECYFT 337

Query: 241 LIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKML 293
           LI  + K G+F+ AL  CRE +++ WVP F  M+ LV GL   SKV+EAKE++   K+  
Sbjct: 338 LIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKF 397

[Close]
BLAST of CmoCh14G005760 vs. Swiss-Prot
Match: PP226_ARATH (Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidopsis thaliana GN=At3g13160 PE=2 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.4e-22
Identity = 78/294 (26.53%), Postives = 142/294 (48.30%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ I++   K P    EGF  R+I LY   GM + A +  D++   + C  +  S  A+L
Sbjct: 90  VEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMP-ERNCKRTALSFNALL 149

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           +  +N+   + V  +F+ +P K+ + P V S+N ++K    +     A   IDE+     
Sbjct: 150 NACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGL 209

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLC-KNKD--- 180
           K  P+  ++NI L   + KG     + I   + ++ ++ D+ SYN R+L L  +NK    
Sbjct: 210 K--PDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEM 269

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             + A+I G+ + G ++ A    K + ++G   P   ++ SL+ 
Sbjct: 270 VSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNG-CRPLKFVFNSLLP 329

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTK 273
           ++ K G+ + A E C+EI  +R +     ++ +V  LV  SK +EA+E+VE  K
Sbjct: 330 AICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVELAK 379

[Close]
BLAST of CmoCh14G005760 vs. Swiss-Prot
Match: PP388_ARATH (Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 5.4e-20
Identity = 75/272 (27.57%), Postives = 128/272 (47.06%), Query Frame = 1 

Query: 12  PFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKP---CDLSEKSLCAVLSVYLNNSM 71
           P    E  +I L+  Y  +G  + ++R    + L  P      S +SL  +L+V + N  
Sbjct: 115 PIKCGENLFIDLLRNYGLAGRYESSMR----IFLRIPDFGVKRSVRSLNTLLNVLIQNQR 174

Query: 72  PEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDS 131
            + VH MF+   E  G+TP + + NL++KA  ++ND+ESA   +DE+      +VPN+ +
Sbjct: 175 FDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI--PSMGLVPNLVT 234

Query: 132 YNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVG 191
           Y   LG Y  +GD+     +++E+  RG   D  +Y               ++ GY  +G
Sbjct: 235 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYT-------------VLMDGYCKLG 294

Query: 192 DIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWVPPFEAM 251
               A  V+  M E   + P+   Y  +IR++ KE +   A     E+++R ++P     
Sbjct: 295 RFSEAATVMDDM-EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLC 354

Query: 252 EGLVRGLVCISKVEEAKEVVEKTKKMLKGPAM 281
             ++  L    KV+EA  +    +KMLK   M
Sbjct: 355 CKVIDALCEDHKVDEACGL---WRKMLKNNCM 363

[Close]
BLAST of CmoCh14G005760 vs. Swiss-Prot
Match: PP225_ARATH (Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN=At3g13150 PE=2 SV=1)

HSP 1 Score: 98.2 bits (243), Expect = 1.6e-19
Identity = 73/284 (25.70%), Postives = 143/284 (50.35%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVI-LNKPCDLSEKSLCAV 60
           +D ++Q   K     SE F IR+++LY  SGM + A +  D++  LN  C+ + KS  A+
Sbjct: 106 IDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELN--CERTVKSFNAL 165

Query: 61  LSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDD 120
           LS Y+N+   ++  + F+ +PEK+G+TP +V++N ++KA  ++  ++   +  +EL K+ 
Sbjct: 166 LSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNG 225

Query: 121 AKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDA 180
            +  P++ S+N  L  ++ +   V  D I   +  + L  ++ SYN R+  L +NK +  
Sbjct: 226 FE--PDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTD 285

Query: 181 IIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKR 240
            ++              L  +++   +SP    Y +LI +   +   +  ++ C   +K 
Sbjct: 286 ALN--------------LIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMK-CYNEMKE 345

Query: 241 RWVPPFEAMEGLVRGLVC-ISKVEEAKEVVEKT--KKMLKGPAM 281
           + + P      ++  L+C    ++ A EV E+    K+L  P M
Sbjct: 346 KGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNM 370

[Close]
BLAST of CmoCh14G005760 vs. Swiss-Prot
Match: PPR82_ARATH (Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidopsis thaliana GN=At1g55890 PE=2 SV=1)

HSP 1 Score: 97.4 bits (241), Expect = 2.7e-19
Identity = 73/279 (26.16%), Postives = 133/279 (47.67%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ I++   K      EGF  R+I LY  +GM + A +  +++  N+ C  S  S  A+L
Sbjct: 93  VEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMP-NRDCKRSVLSFNALL 152

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           S Y  +   + V E+F  +P K+ + P +VS+N ++KA  +++ L  A   +DE+     
Sbjct: 153 SAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGL 212

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAI 180
           K  P+I ++N  L + + KG     + I  ++ ++ +  D+ +YN R+L L        +
Sbjct: 213 K--PDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKEL 272

Query: 181 IHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRR 240
           ++ +G     EL    LK         P    + ++IR  + EG+ D A    +EI+K  
Sbjct: 273 VNLFG-----ELKASGLK---------PDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHG 332

Query: 241 WVPPFEAMEGLVRGLVCISKVEEAKEVVEKT--KKMLKG 278
           + P       L+  +      E A E+ ++T  K+ L G
Sbjct: 333 YRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVG 354

[Close]
BLAST of CmoCh14G005760 vs. TrEMBL
Match: A0A0A0LF76_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824840 PE=4 SV=1)

HSP 1 Score: 331.6 bits (849), Expect = 9.4e-88
Identity = 185/328 (56.40%), Postives = 219/328 (66.77%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +D IIQSH KSP A SEGFWIRLIMLYSS GMV+QA+  LDQ IL+K C+LSEKSLCA+L
Sbjct: 92  IDVIIQSHHKSPSATSEGFWIRLIMLYSSVGMVNQALYILDQAILHKSCNLSEKSLCAIL 151

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SV+L+NSMPEKVHEMFR+IPEKIGVTPT VSHNLVLKAFV+QNDL SARNWIDEL KDDA
Sbjct: 152 SVFLDNSMPEKVHEMFRSIPEKIGVTPTAVSHNLVLKAFVRQNDLPSARNWIDELCKDDA 211

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAI 180
           KV+PNIDS+ I LGAYW+ GD++GFD I KEISKRGLEF+L +YNYRI RLCKNK     
Sbjct: 212 KVIPNIDSFTILLGAYWSNGDMIGFDEIEKEISKRGLEFNLATYNYRISRLCKNK----- 271

Query: 181 IHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRR 240
                   +   A K+L  M+  G V P+S  Y S+I      G+ + A++  + I++  
Sbjct: 272 --------ECARAKKILDEMISKG-VKPNSSSYDSIIHGYCDVGDIESAMKILKGILEDG 331

Query: 241 WVPPFEAM-EGLVRGLV-----------CISKV------------------------EEA 293
            V P   +   L+R +V           C   +                        EEA
Sbjct: 332 HVSPTSRIYYRLIRSMVKEGEFEMALETCRETIKRRWVPPFEAMEALVRGLVAMSKVEEA 391

[Close]
BLAST of CmoCh14G005760 vs. TrEMBL
Match: A0A0D2S7C7_GOSRA (Uncharacterized protein OS=Gossypium raimondii GN=B456_013G028800 PE=4 SV=1)

HSP 1 Score: 244.2 bits (622), Expect = 2.0e-61
Identity = 137/318 (43.08%), Postives = 194/318 (61.01%), Query Frame = 1 

Query: 11  SPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPE 70
           +P   SEGFWIRLIMLYS++GMV QA++TLD +  N+ C++SEKSLCA+L+VYLNN M E
Sbjct: 97  TPALKSEGFWIRLIMLYSNAGMVPQALQTLDDLSRNRYCNISEKSLCAILTVYLNNGMFE 156

Query: 71  KVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYN 130
           ++H+ F+T+ +K+GV P VVSHNLVLKAFV++N +ESAR W++++      V PNID+YN
Sbjct: 157 QIHDCFKTLSKKLGVKPKVVSHNLVLKAFVKENKIESAREWVEKM-----DVNPNIDTYN 216

Query: 131 IFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVGDI 190
           I LGAY   GD  GFDG++KE+  +G+E +L +YN+RI RLCK+K             + 
Sbjct: 217 ILLGAYLKNGDQNGFDGVMKEVINKGIEGNLATYNHRISRLCKSK-------------EC 276

Query: 191 ELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWVPPFE-AME 250
             A K+L  M+  G + P+S  Y ++I    + G+ + A +   +++   +V P   A  
Sbjct: 277 ARAKKLLDEMISKG-MKPNSASYNTIIDGFCRIGDLESAKKVLDKMLSDGYVLPCSFAYY 336

Query: 251 GLVRGLVCISKV-----------------------------------EEAKEVVEKTKKM 293
            L+R +V   ++                                   EEAK+VVEK KK 
Sbjct: 337 SLIRSMVNEGELDMALEMSKEIIKRKWVPPFEAMEGLVKGLVERSRSEEAKQVVEKMKKR 395

[Close]
BLAST of CmoCh14G005760 vs. TrEMBL
Match: A0A059AA84_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00281 PE=4 SV=1)

HSP 1 Score: 235.3 bits (599), Expect = 9.2e-59
Identity = 136/316 (43.04%), Postives = 185/316 (58.54%), Query Frame = 1 

Query: 16  SEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEM 75
           SEGFWIRL+M+YS++GMVD+A+RT D+    K CD+SEKSLCAVLSV+LNN    +VHE+
Sbjct: 109 SEGFWIRLMMVYSNAGMVDEAMRTFDRAREAKRCDVSEKSLCAVLSVHLNNGSIGRVHEL 168

Query: 76  FRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIFLGA 135
           F  +P ++GVTP   +HNLVLKAFV+  D E+AR W+ E+ +   +V+PNIDSYNI LGA
Sbjct: 169 FEKLPRELGVTPAAAAHNLVLKAFVKDGDTEAARAWLAEM-EARHQVIPNIDSYNILLGA 228

Query: 136 YWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVGDIELATK 195
           Y   GD   FD +VKEI  +GLE ++ +YN RI RLCKNK             +   A K
Sbjct: 229 YLKNGDFSAFDRVVKEILGKGLECNVTAYNLRIARLCKNK-------------ECARANK 288

Query: 196 VLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIK----------------- 255
           +L  M+  G V P+S  Y ++I    + G+F+ A +    +++                 
Sbjct: 289 LLAEMIARG-VKPNSACYNAVIDGFARLGDFESAKKVLDGMVRDGHVAPCSFTYYTLLRG 348

Query: 256 -------------------RRWVPPFEAMEGLVRGLVCISKV---EEAKEVVEKTKKMLK 293
                              RRWVPP    E +   +  + K    EEAK++VEK K+ LK
Sbjct: 349 MVREGEFDSGLEMCKEIVKRRWVPP---FEAMQSLIDGLLKASKGEEAKDIVEKMKRRLK 406

[Close]
BLAST of CmoCh14G005760 vs. TrEMBL
Match: A0A061EGF9_THECC (Pentatricopeptide repeat 336, putative OS=Theobroma cacao GN=TCM_011295 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.0e-57
Identity = 139/332 (41.87%), Postives = 198/332 (59.64%), Query Frame = 1 

Query: 1   MDGIIQS---HLKSPFAI-SEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSL 60
           +D ++Q+   H ++  A+ SEGFWIRLIMLYS++GMV QA++TL+ +  N+   +SEKSL
Sbjct: 83  VDSLLQAQKLHSQNASALKSEGFWIRLIMLYSNAGMVPQALQTLEDLCQNRYSIVSEKSL 142

Query: 61  CAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELY 120
           CA+L+VYLNN M E+++E F+TIPEK+GV P+VVSHNL+LKAFV++N LESA  W++++ 
Sbjct: 143 CAILTVYLNNGMFEQIYESFKTIPEKLGVKPSVVSHNLILKAFVKENKLESALEWVEKM- 202

Query: 121 KDDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD 180
                V PNI +YNI LG Y   GD  GFDG +KE+S++GLE +L +YN+RI R CK+K 
Sbjct: 203 ----DVSPNIATYNILLGGYLKNGDENGFDGAMKEVSRKGLEGNLTTYNHRISRFCKSK- 262

Query: 181 YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREI 240
                       +   A K+L  M+  G V P+S  Y ++I    +  + + A +   ++
Sbjct: 263 ------------ECARANKLLDEMVSKG-VKPNSASYNTIIDGFCRIEDLESARKVLDKM 322

Query: 241 IKRRWVPPFE----------------------AMEGLVRGLVCISKV------------- 293
           +   +V P                        +ME + R  V   +              
Sbjct: 323 LSDGYVLPCSFTYYTLLRSMVKEGEFDSALEMSMESIKRKWVPPFEAMEGLVKGLVERSR 382

[Close]
BLAST of CmoCh14G005760 vs. TrEMBL
Match: A0A0B0PYP9_GOSAR (Pentatricopeptide repeat-containing, mitochondrial-like protein OS=Gossypium arboreum GN=F383_00396 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.0e-54
Identity = 118/267 (44.19%), Postives = 178/267 (66.67%), Query Frame = 1 

Query: 11  SPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPE 70
           +P   SEGFWIRLIMLYS++GMV QA++TLD +  N+ C++SEKSLCA+L+VYLNN M E
Sbjct: 97  TPALKSEGFWIRLIMLYSNAGMVPQALQTLDDLSRNRYCNISEKSLCAILTVYLNNGMFE 156

Query: 71  KVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYN 130
           ++H+ F+T+P+K+GV P VVSHNLVLKAFV++N +ESAR W++++      V PNID+YN
Sbjct: 157 QIHDCFKTLPKKLGVKPKVVSHNLVLKAFVKENKIESAREWVEKM-----DVNPNIDTYN 216

Query: 131 IFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVGDI 190
           I LGAY   GD  GFDG++KE+  +G+E +L +YN+RI RLCK+K             + 
Sbjct: 217 ILLGAYLKNGDQNGFDGVMKEVINKGIEGNLTTYNHRISRLCKSK-------------EC 276

Query: 191 ELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWVPPFE-AME 250
             A K+L  M+  G + P+S  Y ++I    + G+ + A +   +++   +V P   A  
Sbjct: 277 ARAKKLLDEMVSKG-LKPNSASYNTIIDGFCRIGDLESAKKVLDKMLSDGYVLPCSFAYY 336

Query: 251 GLVRGLVCISKVEEAKEVVEKTKKMLK 277
            L+R +V   +++ A   +E +K+++K
Sbjct: 337 SLIRSMVNEGELDMA---LEMSKEIIK 341

[Close]
BLAST of CmoCh14G005760 vs. TAIR10
Match: AT1G11630.1 (AT1G11630.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 128.6 bits (322), Expect = 6.1e-30
Identity = 85/317 (26.81%), Postives = 160/317 (50.47%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRT---LDQVILNKPCDLSEKSLC 60
           +DG IQ+    P   SE F +R I+LY  + M+D++I+T   L+Q  + +    + KSL 
Sbjct: 98  LDGFIQNQ---PDPKSESFAVRAIILYGRANMLDRSIQTFRNLEQYEIPR----TVKSLN 157

Query: 61  AVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYK 120
           A+L   L     ++ + ++  +P+  G+ P + ++N +++   +     S+ + + E+ +
Sbjct: 158 ALLFACLMAKDYKEANRVYLEMPKMYGIEPDLETYNRMIRVLCESGSTSSSYSIVAEMER 217

Query: 121 DDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD- 180
              K  P   S+ + +  ++ +        +++ + + G+   + +YN  I  LCK K  
Sbjct: 218 KWIK--PTAASFGLMIDGFYKEEKFDEVRKVMRMMDEFGVHVGVATYNIMIQCLCKRKKS 277

Query: 181 ---------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYS 240
                                Y  +IHG+ +  +++ A  + + M+ +G+  P S  Y++
Sbjct: 278 AEAKALIDGVMSCRMRPNSVTYSLLIHGFCSEENLDEAMNLFEVMVCNGY-KPDSECYFT 337

Query: 241 LIRSMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTKKML 293
           LI  + K G+F+ AL  CRE +++ WVP F  M+ LV GL   SKV+EAKE++   K+  
Sbjct: 338 LIHCLCKGGDFETALILCRESMEKNWVPSFSVMKWLVNGLASRSKVDEAKELIAVVKEKF 397

[Close]
BLAST of CmoCh14G005760 vs. TAIR10
Match: AT3G13160.1 (AT3G13160.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 107.1 bits (266), Expect = 1.9e-23
Identity = 78/294 (26.53%), Postives = 142/294 (48.30%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ I++   K P    EGF  R+I LY   GM + A +  D++   + C  +  S  A+L
Sbjct: 90  VEEILEEQNKYPNMSKEGFVARIINLYGRVGMFENAQKVFDEMP-ERNCKRTALSFNALL 149

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           +  +N+   + V  +F+ +P K+ + P V S+N ++K    +     A   IDE+     
Sbjct: 150 NACVNSKKFDLVEGIFKELPGKLSIEPDVASYNTLIKGLCGKGSFTEAVALIDEIENKGL 209

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLC-KNKD--- 180
           K  P+  ++NI L   + KG     + I   + ++ ++ D+ SYN R+L L  +NK    
Sbjct: 210 K--PDHITFNILLHESYTKGKFEEGEQIWARMVEKNVKRDIRSYNARLLGLAMENKSEEM 269

Query: 181 ------------------YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIR 240
                             + A+I G+ + G ++ A    K + ++G   P   ++ SL+ 
Sbjct: 270 VSLFDKLKGNELKPDVFTFTAMIKGFVSEGKLDEAITWYKEIEKNG-CRPLKFVFNSLLP 329

Query: 241 SMVKEGEFDLALETCREIIKRRWVPPFEAMEGLVRGLVCISKVEEAKEVVEKTK 273
           ++ K G+ + A E C+EI  +R +     ++ +V  LV  SK +EA+E+VE  K
Sbjct: 330 AICKAGDLESAYELCKEIFAKRLLVDEAVLQEVVDALVKGSKQDEAEEIVELAK 379

[Close]
BLAST of CmoCh14G005760 vs. TAIR10
Match: AT5G16420.1 (AT5G16420.1 Pentatricopeptide repeat (PPR-like) superfamily protein)

HSP 1 Score: 99.8 bits (247), Expect = 3.0e-21
Identity = 75/272 (27.57%), Postives = 128/272 (47.06%), Query Frame = 1 

Query: 12  PFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKP---CDLSEKSLCAVLSVYLNNSM 71
           P    E  +I L+  Y  +G  + ++R    + L  P      S +SL  +L+V + N  
Sbjct: 115 PIKCGENLFIDLLRNYGLAGRYESSMR----IFLRIPDFGVKRSVRSLNTLLNVLIQNQR 174

Query: 72  PEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDS 131
            + VH MF+   E  G+TP + + NL++KA  ++ND+ESA   +DE+      +VPN+ +
Sbjct: 175 FDLVHAMFKNSKESFGITPNIFTCNLLVKALCKKNDIESAYKVLDEI--PSMGLVPNLVT 234

Query: 132 YNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVG 191
           Y   LG Y  +GD+     +++E+  RG   D  +Y               ++ GY  +G
Sbjct: 235 YTTILGGYVARGDMESAKRVLEEMLDRGWYPDATTYT-------------VLMDGYCKLG 294

Query: 192 DIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWVPPFEAM 251
               A  V+  M E   + P+   Y  +IR++ KE +   A     E+++R ++P     
Sbjct: 295 RFSEAATVMDDM-EKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEMLERSFMPDSSLC 354

Query: 252 EGLVRGLVCISKVEEAKEVVEKTKKMLKGPAM 281
             ++  L    KV+EA  +    +KMLK   M
Sbjct: 355 CKVIDALCEDHKVDEACGL---WRKMLKNNCM 363

[Close]
BLAST of CmoCh14G005760 vs. TAIR10
Match: AT3G13150.1 (AT3G13150.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 98.2 bits (243), Expect = 8.8e-21
Identity = 73/284 (25.70%), Postives = 143/284 (50.35%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVI-LNKPCDLSEKSLCAV 60
           +D ++Q   K     SE F IR+++LY  SGM + A +  D++  LN  C+ + KS  A+
Sbjct: 106 IDEVLQYQKKFDDIKSEDFVIRIMLLYGYSGMAEHAHKLFDEMPELN--CERTVKSFNAL 165

Query: 61  LSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDD 120
           LS Y+N+   ++  + F+ +PEK+G+TP +V++N ++KA  ++  ++   +  +EL K+ 
Sbjct: 166 LSAYVNSKKLDEAMKTFKELPEKLGITPDLVTYNTMIKALCRKGSMDDILSIFEELEKNG 225

Query: 121 AKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDA 180
            +  P++ S+N  L  ++ +   V  D I   +  + L  ++ SYN R+  L +NK +  
Sbjct: 226 FE--PDLISFNTLLEEFYRRELFVEGDRIWDLMKSKNLSPNIRSYNSRVRGLTRNKKFTD 285

Query: 181 IIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKR 240
            ++              L  +++   +SP    Y +LI +   +   +  ++ C   +K 
Sbjct: 286 ALN--------------LIDVMKTEGISPDVHTYNALITAYRVDNNLEEVMK-CYNEMKE 345

Query: 241 RWVPPFEAMEGLVRGLVC-ISKVEEAKEVVEKT--KKMLKGPAM 281
           + + P      ++  L+C    ++ A EV E+    K+L  P M
Sbjct: 346 KGLTPDTVTYCMLIPLLCKKGDLDRAVEVSEEAIKHKLLSRPNM 370

[Close]
BLAST of CmoCh14G005760 vs. TAIR10
Match: AT1G55890.1 (AT1G55890.1 Tetratricopeptide repeat (TPR)-like superfamily protein)

HSP 1 Score: 97.4 bits (241), Expect = 1.5e-20
Identity = 73/279 (26.16%), Postives = 133/279 (47.67%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           ++ I++   K      EGF  R+I LY  +GM + A +  +++  N+ C  S  S  A+L
Sbjct: 93  VEEILEEQKKYRDMSKEGFAARIISLYGKAGMFENAQKVFEEMP-NRDCKRSVLSFNALL 152

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           S Y  +   + V E+F  +P K+ + P +VS+N ++KA  +++ L  A   +DE+     
Sbjct: 153 SAYRLSKKFDVVEELFNELPGKLSIKPDIVSYNTLIKALCEKDSLPEAVALLDEIENKGL 212

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAI 180
           K  P+I ++N  L + + KG     + I  ++ ++ +  D+ +YN R+L L        +
Sbjct: 213 K--PDIVTFNTLLLSSYLKGQFELGEEIWAKMVEKNVAIDIRTYNARLLGLANEAKSKEL 272

Query: 181 IHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRR 240
           ++ +G     EL    LK         P    + ++IR  + EG+ D A    +EI+K  
Sbjct: 273 VNLFG-----ELKASGLK---------PDVFSFNAMIRGSINEGKMDEAEAWYKEIVKHG 332

Query: 241 WVPPFEAMEGLVRGLVCISKVEEAKEVVEKT--KKMLKG 278
           + P       L+  +      E A E+ ++T  K+ L G
Sbjct: 333 YRPDKATFALLLPAMCKAGDFESAIELFKETFSKRYLVG 354

[Close]
BLAST of CmoCh14G005760 vs. NCBI nr
Match: gi|659085357|ref|XP_008443376.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis melo])

HSP 1 Score: 338.2 bits (866), Expect = 1.4e-89
Identity = 185/328 (56.40%), Postives = 220/328 (67.07%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +D IIQSHLKSP A SEGFWIRLIMLYSS GMV QA+  LDQ IL+KPC+LSEKSLCA+L
Sbjct: 92  IDDIIQSHLKSPSATSEGFWIRLIMLYSSVGMVSQALHILDQAILHKPCNLSEKSLCAIL 151

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SVYL+NSMPEKVHEMFR+ PEKIGVTPTV+SHNLVLKAFV+QNDL SARNWIDELYKDDA
Sbjct: 152 SVYLDNSMPEKVHEMFRSTPEKIGVTPTVISHNLVLKAFVRQNDLPSARNWIDELYKDDA 211

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAI 180
           KV+PNIDSY I LGAYW+ GD+VGFD I+KEI  RGLEF++ +YNYRI RLCKNK     
Sbjct: 212 KVIPNIDSYTILLGAYWSNGDMVGFDEIMKEILNRGLEFNIATYNYRISRLCKNK----- 271

Query: 181 IHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRR 240
                   +   A K+L  M+  G V P+S  Y S+I      G+ + A++  + +++  
Sbjct: 272 --------ECARAKKILDEMISKG-VKPNSSSYDSIIHGYCDVGDIESAMKILKGMLEDG 331

Query: 241 WVPPFEAME-GLVRGLV-----------CISKV------------------------EEA 293
            V P   +   L+R +V           C   +                        EEA
Sbjct: 332 HVSPTSRIYFRLIRSMVKEGEFDLALDTCRQMLKRRWVPPFETMEALVRGLVAMSKVEEA 391

[Close]
BLAST of CmoCh14G005760 vs. NCBI nr
Match: gi|449438040|ref|XP_004136798.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Cucumis sativus])

HSP 1 Score: 331.6 bits (849), Expect = 1.3e-87
Identity = 185/328 (56.40%), Postives = 219/328 (66.77%), Query Frame = 1 

Query: 1   MDGIIQSHLKSPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVL 60
           +D IIQSH KSP A SEGFWIRLIMLYSS GMV+QA+  LDQ IL+K C+LSEKSLCA+L
Sbjct: 92  IDVIIQSHHKSPSATSEGFWIRLIMLYSSVGMVNQALYILDQAILHKSCNLSEKSLCAIL 151

Query: 61  SVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDA 120
           SV+L+NSMPEKVHEMFR+IPEKIGVTPT VSHNLVLKAFV+QNDL SARNWIDEL KDDA
Sbjct: 152 SVFLDNSMPEKVHEMFRSIPEKIGVTPTAVSHNLVLKAFVRQNDLPSARNWIDELCKDDA 211

Query: 121 KVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAI 180
           KV+PNIDS+ I LGAYW+ GD++GFD I KEISKRGLEF+L +YNYRI RLCKNK     
Sbjct: 212 KVIPNIDSFTILLGAYWSNGDMIGFDEIEKEISKRGLEFNLATYNYRISRLCKNK----- 271

Query: 181 IHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRR 240
                   +   A K+L  M+  G V P+S  Y S+I      G+ + A++  + I++  
Sbjct: 272 --------ECARAKKILDEMISKG-VKPNSSSYDSIIHGYCDVGDIESAMKILKGILEDG 331

Query: 241 WVPPFEAM-EGLVRGLV-----------CISKV------------------------EEA 293
            V P   +   L+R +V           C   +                        EEA
Sbjct: 332 HVSPTSRIYYRLIRSMVKEGEFEMALETCRETIKRRWVPPFEAMEALVRGLVAMSKVEEA 391

[Close]
BLAST of CmoCh14G005760 vs. NCBI nr
Match: gi|823261300|ref|XP_012463379.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Gossypium raimondii])

HSP 1 Score: 244.2 bits (622), Expect = 2.8e-61
Identity = 137/318 (43.08%), Postives = 194/318 (61.01%), Query Frame = 1 

Query: 11  SPFAISEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPE 70
           +P   SEGFWIRLIMLYS++GMV QA++TLD +  N+ C++SEKSLCA+L+VYLNN M E
Sbjct: 97  TPALKSEGFWIRLIMLYSNAGMVPQALQTLDDLSRNRYCNISEKSLCAILTVYLNNGMFE 156

Query: 71  KVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYN 130
           ++H+ F+T+ +K+GV P VVSHNLVLKAFV++N +ESAR W++++      V PNID+YN
Sbjct: 157 QIHDCFKTLSKKLGVKPKVVSHNLVLKAFVKENKIESAREWVEKM-----DVNPNIDTYN 216

Query: 131 IFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVGDI 190
           I LGAY   GD  GFDG++KE+  +G+E +L +YN+RI RLCK+K             + 
Sbjct: 217 ILLGAYLKNGDQNGFDGVMKEVINKGIEGNLATYNHRISRLCKSK-------------EC 276

Query: 191 ELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIKRRWVPPFE-AME 250
             A K+L  M+  G + P+S  Y ++I    + G+ + A +   +++   +V P   A  
Sbjct: 277 ARAKKLLDEMISKG-MKPNSASYNTIIDGFCRIGDLESAKKVLDKMLSDGYVLPCSFAYY 336

Query: 251 GLVRGLVCISKV-----------------------------------EEAKEVVEKTKKM 293
            L+R +V   ++                                   EEAK+VVEK KK 
Sbjct: 337 SLIRSMVNEGELDMALEMSKEIIKRKWVPPFEAMEGLVKGLVERSRSEEAKQVVEKMKKR 395

[Close]
BLAST of CmoCh14G005760 vs. NCBI nr
Match: gi|702473339|ref|XP_010031305.1| (PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-like [Eucalyptus grandis])

HSP 1 Score: 235.3 bits (599), Expect = 1.3e-58
Identity = 136/316 (43.04%), Postives = 185/316 (58.54%), Query Frame = 1 

Query: 16  SEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSLCAVLSVYLNNSMPEKVHEM 75
           SEGFWIRL+M+YS++GMVD+A+RT D+    K CD+SEKSLCAVLSV+LNN    +VHE+
Sbjct: 109 SEGFWIRLMMVYSNAGMVDEAMRTFDRAREAKRCDVSEKSLCAVLSVHLNNGSIGRVHEL 168

Query: 76  FRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELYKDDAKVVPNIDSYNIFLGA 135
           F  +P ++GVTP   +HNLVLKAFV+  D E+AR W+ E+ +   +V+PNIDSYNI LGA
Sbjct: 169 FEKLPRELGVTPAAAAHNLVLKAFVKDGDTEAARAWLAEM-EARHQVIPNIDSYNILLGA 228

Query: 136 YWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKDYDAIIHGYGNVGDIELATK 195
           Y   GD   FD +VKEI  +GLE ++ +YN RI RLCKNK             +   A K
Sbjct: 229 YLKNGDFSAFDRVVKEILGKGLECNVTAYNLRIARLCKNK-------------ECARANK 288

Query: 196 VLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREIIK----------------- 255
           +L  M+  G V P+S  Y ++I    + G+F+ A +    +++                 
Sbjct: 289 LLAEMIARG-VKPNSACYNAVIDGFARLGDFESAKKVLDGMVRDGHVAPCSFTYYTLLRG 348

Query: 256 -------------------RRWVPPFEAMEGLVRGLVCISKV---EEAKEVVEKTKKMLK 293
                              RRWVPP    E +   +  + K    EEAK++VEK K+ LK
Sbjct: 349 MVREGEFDSGLEMCKEIVKRRWVPP---FEAMQSLIDGLLKASKGEEAKDIVEKMKRRLK 406

[Close]
BLAST of CmoCh14G005760 vs. NCBI nr
Match: gi|590697861|ref|XP_007045557.1| (Pentatricopeptide repeat 336, putative [Theobroma cacao])

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 139/332 (41.87%), Postives = 198/332 (59.64%), Query Frame = 1 

Query: 1   MDGIIQS---HLKSPFAI-SEGFWIRLIMLYSSSGMVDQAIRTLDQVILNKPCDLSEKSL 60
           +D ++Q+   H ++  A+ SEGFWIRLIMLYS++GMV QA++TL+ +  N+   +SEKSL
Sbjct: 83  VDSLLQAQKLHSQNASALKSEGFWIRLIMLYSNAGMVPQALQTLEDLCQNRYSIVSEKSL 142

Query: 61  CAVLSVYLNNSMPEKVHEMFRTIPEKIGVTPTVVSHNLVLKAFVQQNDLESARNWIDELY 120
           CA+L+VYLNN M E+++E F+TIPEK+GV P+VVSHNL+LKAFV++N LESA  W++++ 
Sbjct: 143 CAILTVYLNNGMFEQIYESFKTIPEKLGVKPSVVSHNLILKAFVKENKLESALEWVEKM- 202

Query: 121 KDDAKVVPNIDSYNIFLGAYWNKGDLVGFDGIVKEISKRGLEFDLGSYNYRILRLCKNKD 180
                V PNI +YNI LG Y   GD  GFDG +KE+S++GLE +L +YN+RI R CK+K 
Sbjct: 203 ----DVSPNIATYNILLGGYLKNGDENGFDGAMKEVSRKGLEGNLTTYNHRISRFCKSK- 262

Query: 181 YDAIIHGYGNVGDIELATKVLKSMLEDGHVSPSSRIYYSLIRSMVKEGEFDLALETCREI 240
                       +   A K+L  M+  G V P+S  Y ++I    +  + + A +   ++
Sbjct: 263 ------------ECARANKLLDEMVSKG-VKPNSASYNTIIDGFCRIEDLESARKVLDKM 322

Query: 241 IKRRWVPPFE----------------------AMEGLVRGLVCISKV------------- 293
           +   +V P                        +ME + R  V   +              
Sbjct: 323 LSDGYVLPCSFTYYTLLRSMVKEGEFDSALEMSMESIKRKWVPPFEAMEGLVKGLVERSR 382

The following BLAST results are available for this feature:
BLAST of CmoCh14G005760 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PPR33_ARATH1.1e-2826.81Pentatricopeptide repeat-containing protein At1g11630, mitochondrial OS=Arabidop... [more]
PP226_ARATH3.4e-2226.53Pentatricopeptide repeat-containing protein At3g13160, mitochondrial OS=Arabidop... [more]
PP388_ARATH5.4e-2027.57Pentatricopeptide repeat-containing protein At5g16420, mitochondrial OS=Arabidop... [more]
PP225_ARATH1.6e-1925.70Pentatricopeptide repeat-containing protein At3g13150 OS=Arabidopsis thaliana GN... [more]
PPR82_ARATH2.7e-1926.16Pentatricopeptide repeat-containing protein At1g55890, mitochondrial OS=Arabidop... [more]
BLAST of CmoCh14G005760 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LF76_CUCSA9.4e-8856.40Uncharacterized protein OS=Cucumis sativus GN=Csa_3G824840 PE=4 SV=1[more]
A0A0D2S7C7_GOSRA2.0e-6143.08Uncharacterized protein OS=Gossypium raimondii GN=B456_013G028800 PE=4 SV=1[more]
A0A059AA84_EUCGR9.2e-5943.04Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_J00281 PE=4 SV=1[more]
A0A061EGF9_THECC1.0e-5741.87Pentatricopeptide repeat 336, putative OS=Theobroma cacao GN=TCM_011295 PE=4 SV=... [more]
A0A0B0PYP9_GOSAR1.0e-5444.19Pentatricopeptide repeat-containing, mitochondrial-like protein OS=Gossypium arb... [more]
BLAST of CmoCh14G005760 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G11630.16.1e-3026.81 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT3G13160.11.9e-2326.53 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT5G16420.13.0e-2127.57 Pentatricopeptide repeat (PPR-like) superfamily protein[more]
AT3G13150.18.8e-2125.70 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
AT1G55890.11.5e-2026.16 Tetratricopeptide repeat (TPR)-like superfamily protein[more]
BLAST of CmoCh14G005760 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085357|ref|XP_008443376.1|1.4e-8956.40PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-... [more]
gi|449438040|ref|XP_004136798.1|1.3e-8756.40PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-... [more]
gi|823261300|ref|XP_012463379.1|2.8e-6143.08PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-... [more]
gi|702473339|ref|XP_010031305.1|1.3e-5843.04PREDICTED: pentatricopeptide repeat-containing protein At1g61870, mitochondrial-... [more]
gi|590697861|ref|XP_007045557.1|1.5e-5741.87Pentatricopeptide repeat 336, putative [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0005515 protein binding
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G005760.1CmoCh14G005760.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 176..219
score: 1.0E-4coord: 84..136
score: 2.
IPR002885Pentatricopeptide repeatTIGRFAMsTIGR00756TIGR00756coord: 177..206
score: 1.1E-5coord: 212..243
score: 6.
IPR002885Pentatricopeptide repeatPROFILEPS51375PPRcoord: 52..87
score: 5.853coord: 173..207
score: 8.912coord: 88..122
score: 7.267coord: 125..159
score: 7.191coord: 209..243
score: 9.021coord: 16..46
score: 5
IPR011990Tetratricopeptide-like helical domainGENE3DG3DSA:1.25.40.10coord: 176..239
score: 2.3E-6coord: 22..142
score: 2.
NoneNo IPR availablePANTHERPTHR24015FAMILY NOT NAMEDcoord: 17..273
score: 1.9
NoneNo IPR availablePANTHERPTHR24015:SF773SUBFAMILY NOT NAMEDcoord: 17..273
score: 1.9