CmoCh14G005330 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G005330
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 2706451 .. 2706739 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGTCTCTCGTTCTTCTCCTCTCCGAACTCGTCCGTCACCACAACATCAATCCCGATTACTGGCTTACTCTTCCTCTTCCACCTCCGCCGCCGCCGCCGTCGTCTGCTTCTGCAGTCGCGAAGTCGCTGTCCAGTAAGTGCCAGAACAATATGAGTCGGATCTGCGTCGATGAAACGGTAATGGACGAGTTTCTCAAGGAATCTAGGGTTTGTGTTGATTTAGTTTGGCCCTAATTTCACCTCTACTGCTCGATTTTGCTTCCTTATGTCGATGCTCTATAATTAA

mRNA sequence

ATGGCGTCTCTCGTTCTTCTCCTCTCCGAACTCGTCCGTCACCACAACATCAATCCCGATTACTGGCTTACTCTTCCTCTTCCACCTCCGCCGCCGCCGCCGTCGTCTGCTTCTGCAGTCGCGAAGTCGCTGTCCAGTAAGTGCCAGAACAATATGAGTCGGATCTGCGTCGATGAAACGGTAATGGACGAGTTTCTCAAGGAATCTAGGTTTGGCCCTAATTTCACCTCTACTGCTCGATTTTGCTTCCTTATGTCGATGCTCTATAATTAA

Coding sequence (CDS)

ATGGCGTCTCTCGTTCTTCTCCTCTCCGAACTCGTCCGTCACCACAACATCAATCCCGATTACTGGCTTACTCTTCCTCTTCCACCTCCGCCGCCGCCGCCGTCGTCTGCTTCTGCAGTCGCGAAGTCGCTGTCCAGTAAGTGCCAGAACAATATGAGTCGGATCTGCGTCGATGAAACGGTAATGGACGAGTTTCTCAAGGAATCTAGGTTTGGCCCTAATTTCACCTCTACTGCTCGATTTTGCTTCCTTATGTCGATGCTCTATAATTAA

Homology

[Close]

BLAST of CmoCh14G005330 vs. TrEMBL
Match: A0A0A0LHI4_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822280 PE=4 SV=1)

HSP 1 Score: 77.8 bits (190), Expect = 7.5e-12
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MASLVLLLSELVRHHNINPDYWLTLPLPPPPPPPSSASAVAKSLS----SKC---QNNMS 60
          MASL+LLLS+L+RHH+ NPDY LTLP PP   P SS+S+ A   S    S C    N  +
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICVDETVMDEFLKESR 71
          RIC DE VMDEFLKESR
Sbjct: 61 RICADENVMDEFLKESR 77

[Close]

BLAST of CmoCh14G005330 vs. NCBI nr
Match: gi|700204343|gb|KGN59476.1| (hypothetical protein Csa_3G822280 [Cucumis sativus])

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-11
Identity = 46/77 (59.74%), Postives = 53/77 (68.83%), Query Frame = 1


Query: 1  MASLVLLLSELVRHHNINPDYWLTLPLPPPPPPPSSASAVAKSLS----SKC---QNNMS 60
          MASL+LLLS+L+RHH+ NPDY LTLP PP   P SS+S+ A   S    S C    N  +
Sbjct: 1  MASLLLLLSQLLRHHDTNPDYSLTLPSPPTTMPSSSSSSSAHGNSVLPRSDCCYANNYKT 60

Query: 61 RICVDETVMDEFLKESR 71
          RIC DE VMDEFLKESR
Sbjct: 61 RICADENVMDEFLKESR 77

The following BLAST results are available for this feature:

BLAST of CmoCh14G005330 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G005330 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LHI4_CUCSA	7.5e-12	59.74	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G822280 PE=4 SV=1	[more]

BLAST of CmoCh14G005330 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh14G005330 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|700204343\|gb\|KGN59476.1\|	1.1e-11	59.74	hypothetical protein Csa_3G822280 [Cucumis sativus]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G005330.1	CmoCh14G005330.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G005330	CmaCh14G005300	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G005330	Bhi11G002366	Wax gourd	cmowgoB0281

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G005330	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G005330	Silver-seed gourd	carcmoB0347
CmoCh14G005330	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G005330	Watermelon (97103) v2	cmowmbB230
CmoCh14G005330	Cucurbita moschata (Rifu)	cmocmoB227
CmoCh14G005330	Cucumber (Gy14) v1	cgycmoB0926
CmoCh14G005330	Cucurbita maxima (Rimu)	cmacmoB802
CmoCh14G005330	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G005330	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G005330	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G005330	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G005330	Watermelon (97103) v1	cmowmB214
CmoCh14G005330	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G005330	Cucurbita pepo (Zucchini)	cmocpeB258
CmoCh14G005330	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G005330	Cucumber (Gy14) v2	cgybcmoB279