CmoCh14G004300 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G004300
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr14 : 2040321 .. 2040602 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGAAGAAGGCTTCAAACTGCAAATCCTTGTGCTACCTTTTCCTTCTGGTTTTGGTTCAAATTCTCACCATTTCTGCTTCTTGTTGCTGCCATCAACTCCAAACCAATACCCTTTTAGCTACAATGGATCAAAGAAGAAGCTTGCCCAGAAAGCTGCTGCTGCTTTCAAGAACAAAGAACATGAAGAACAACTCCATTAAAGAGCCCAAGAAAGCTGTGGAACAAAGCTTCAAGAAAATGCCCCCAAGTGGAGCAAATCCCATTCAAAATAAGAAGTAG

mRNA sequence

ATGAAGAAGAAGGCTTCAAACTGCAAATCCTTGTGCTACCTTTTCCTTCTGGTTTTGGTTCAAATTCTCACCATTTCTGCTTCTTGTTGCTGCCATCAACTCCAAACCAATACCCTTTTAGCTACAATGGATCAAAGAAGAAGCTTGCCCAGAAAGCTGCTGCTGCTTTCAAGAACAAAGAACATGAAGAACAACTCCATTAAAGAGCCCAAGAAAGCTGTGGAACAAAGCTTCAAGAAAATGCCCCCAAGTGGAGCAAATCCCATTCAAAATAAGAAGTAG

Coding sequence (CDS)

ATGAAGAAGAAGGCTTCAAACTGCAAATCCTTGTGCTACCTTTTCCTTCTGGTTTTGGTTCAAATTCTCACCATTTCTGCTTCTTGTTGCTGCCATCAACTCCAAACCAATACCCTTTTAGCTACAATGGATCAAAGAAGAAGCTTGCCCAGAAAGCTGCTGCTGCTTTCAAGAACAAAGAACATGAAGAACAACTCCATTAAAGAGCCCAAGAAAGCTGTGGAACAAAGCTTCAAGAAAATGCCCCCAAGTGGAGCAAATCCCATTCAAAATAAGAAGTAG
Homology
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BLAST of CmoCh14G004300 vs. TrEMBL
Match: U5FK75_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s04810g PE=4 SV=1)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-06
Identity = 39/88 (44.32%), Postives = 59/88 (67.05%), Query Frame = 1 

Query: 7  NCKSLCYLFLLVLVQILTISASCCCHQLQTNTLLATMDQRRSLPRKLL---LLSRTKNMK 66
          N ++L  LF+L+LV IL  S+ C CH+   ++L+ +  +R ++ RKLL   + SR   + 
Sbjct: 4  NSRTLAALFVLILVHILASSSLCLCHE--ESSLIPS--KRSTISRKLLATPMKSRENKLG 63

Query: 67 NNSIKEPKKAVEQSFKKMPPSGANPIQN 92
          + ++KE KKAVEQS +K PPS +NPIQN
Sbjct: 64 DGTMKEAKKAVEQSLRKAPPSVSNPIQN 87

The following BLAST results are available for this feature:
BLAST of CmoCh14G004300 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G004300 vs. TrEMBL
Match NameE-valueIdentityDescription
U5FK75_POPTR8.3e-0644.32Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0016s04810g PE=4 SV=1[more]
BLAST of CmoCh14G004300 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G004300 vs. NCBI nr
Match NameE-valueIdentityDescription
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G004300.1CmoCh14G004300.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePROFILEPS51257PROKAR_LIPOPROTEINcoord: 1..29
score:

Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh14G004300CmaCh14G004260Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G004300Cla017534Watermelon (97103) v1cmowmB214
CmoCh14G004300CSPI03G36570Wild cucumber (PI 183967)cmocpiB229
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G004300Melon (DHL92) v3.6.1cmomedB244
CmoCh14G004300Silver-seed gourdcarcmoB0213
CmoCh14G004300Silver-seed gourdcarcmoB0347
CmoCh14G004300Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G004300Watermelon (97103) v2cmowmbB230
CmoCh14G004300Wax gourdcmowgoB0282
CmoCh14G004300Wax gourdcmowgoB0351
CmoCh14G004300Cucurbita moschata (Rifu)cmocmoB225
CmoCh14G004300Cucumber (Gy14) v1cgycmoB0675
CmoCh14G004300Cucurbita maxima (Rimu)cmacmoB798
CmoCh14G004300Cucumber (Chinese Long) v2cmocuB226
CmoCh14G004300Melon (DHL92) v3.5.1cmomeB215
CmoCh14G004300Watermelon (Charleston Gray)cmowcgB207
CmoCh14G004300Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G004300Cucurbita pepo (Zucchini)cmocpeB255
CmoCh14G004300Cucurbita pepo (Zucchini)cmocpeB260
CmoCh14G004300Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G004300Cucumber (Gy14) v2cgybcmoB279
CmoCh14G004300Cucumber (Gy14) v2cgybcmoB898