CmoCh14G003380 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G003380
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionHVA22-like protein
LocationCmo_Chr14 : 1553189 .. 1554044 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCATATCCAGCGTTTCAATGCTACAAAACGGTTGTGCAGAGCCGGATTCATATCCGAGAGCTTCAATTCTGGTGTCAATTTTGGTAACAACGAGTCCATTTTTGCACTTCCATTTGGTGGAATGGTTGATAATTTCTGTCCTGATCTGCAGTGTTGCCTAGTTTTATTTCTCCTAATAATCAAGAATTTATTTCTCAAATTACGTTCCAATCCTTCTTATTATCGTTGATTTACATGGTGCAACTGTGATGAATGATGATTGCCTTAGATTTTTGTGTTTTGGAATAAAAGTGGAAAAGGTTTTCTCGACGCTCTTTGTTGCTTTGGCTTTGGCCTTTGCCTTTGTCTGCTTTGAACAAGAATTTGAGTAGCTTTCACTCCACTTTGTTATTGATTATATTACTTTTAAATTGAATTCCTATTTATTTAATTGATTTCAGGATCATTGTGGCCATTTTAACGGTTATTGAGAGGATTGCTGACACTTTAGTCGCATGGTATGTGTAACCGTCTTTCCTTTTCTTTTCTTTTTTCCCTTTTTCCTGTAGGAATTTGAACTGTGTTGCATTTTTCATCATTTCACCTGCGCTCAAAATTTATGTTCCAAAACCTTTGTGAAGGATGCCCATGTATGGAGAACTGAAGCTGGCTCTGTTTATCTATTTGTGGTATCCAAAGACTAAGGTAAGAAAAGTGAGTGAATTATTCTGGGAGTAGCTTTAGGATAAGATGTAAAACACAGGACATATCCAGAGCACCTAATCTATGAATAGCGTAAAGTAGTTAGTTCTAATTTGAACACAACTTTCTTAAAGGTGGCCAAAGCTGTAATGTTTGTTAATGGGGACGGCTAA

mRNA sequence

ATGCATATCCAGCGTTTCAATGCTACAAAACGGTTGTGCAGAGCCGGATTCATATCCGAGAGCTTCAATTCTGGTGTCAATTTTGGTAACAACGAGTCCATTTTTGCACTTCCATTTGGTGGAATGGTTGATAATTTCTGTCCTGATCTGCAGATCATTGTGGCCATTTTAACGGTTATTGAGAGGATTGCTGACACTTTAGTCGCATGGATGCCCATGTATGGAGAACTGAAGCTGGCTCTGTTTATCTATTTGTGGTATCCAAAGACTAAGGTGGCCAAAGCTGTAATGTTTGTTAATGGGGACGGCTAA

Coding sequence (CDS)

ATGCATATCCAGCGTTTCAATGCTACAAAACGGTTGTGCAGAGCCGGATTCATATCCGAGAGCTTCAATTCTGGTGTCAATTTTGGTAACAACGAGTCCATTTTTGCACTTCCATTTGGTGGAATGGTTGATAATTTCTGTCCTGATCTGCAGATCATTGTGGCCATTTTAACGGTTATTGAGAGGATTGCTGACACTTTAGTCGCATGGATGCCCATGTATGGAGAACTGAAGCTGGCTCTGTTTATCTATTTGTGGTATCCAAAGACTAAGGTGGCCAAAGCTGTAATGTTTGTTAATGGGGACGGCTAA
Homology
[Close]
BLAST of CmoCh14G003380 vs. Swiss-Prot
Match: HA22G_ARATH (Putative HVA22-like protein g OS=Arabidopsis thaliana GN=HVA22G PE=3 SV=2)

HSP 1 Score: 64.3 bits (155), Expect = 8.9e-10
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          IIVA LT+ ERI D LV+W+PMY E KLA FIYLW+PKTK
Sbjct: 45 IIVAALTIFERIGDALVSWLPMYSEAKLAFFIYLWFPKTK 84

[Close]
BLAST of CmoCh14G003380 vs. Swiss-Prot
Match: HA22I_ARATH (HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2)

HSP 1 Score: 62.0 bits (149), Expect = 4.4e-09
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          I+VA LTV ER+ D  V+W+PMY E KLA FIYLWYPKT+
Sbjct: 45 ILVACLTVFERVGDAFVSWVPMYSEAKLAFFIYLWYPKTR 84

[Close]
BLAST of CmoCh14G003380 vs. Swiss-Prot
Match: HA22H_ARATH (HVA22-like protein h OS=Arabidopsis thaliana GN=HVA22H PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          I+VA LT+ ER+ D L +W+P+Y E KLA FIYLW+PKT+
Sbjct: 45 ILVAALTIFERVGDALASWVPLYCEAKLAFFIYLWFPKTR 84

[Close]
BLAST of CmoCh14G003380 vs. Swiss-Prot
Match: HA22J_ARATH (HVA22-like protein j OS=Arabidopsis thaliana GN=HVA22J PE=2 SV=2)

HSP 1 Score: 57.8 bits (138), Expect = 8.3e-08
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTKVAKAV 97
          I++A+++  ER+ D  ++W+P+YGE+K+  F+YLWYPKTK  + V
Sbjct: 45 ILLALISSFERVGDFFISWLPLYGEMKVVFFVYLWYPKTKGTRHV 89

[Close]
BLAST of CmoCh14G003380 vs. TrEMBL
Match: A0A0A0LBI5_CUCSA (HVA22-like protein OS=Cucumis sativus GN=Csa_3G778390 PE=3 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.3e-12
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          IIVAILTV+ERIADTLVAW+PMYGELKLALFIYLWYPKTK
Sbjct: 45 IIVAILTVVERIADTLVAWLPMYGELKLALFIYLWYPKTK 84

[Close]
BLAST of CmoCh14G003380 vs. TrEMBL
Match: A0A0A0LEQ0_CUCSA (HVA22-like protein OS=Cucumis sativus GN=Csa_3G778380 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKT 91
          IIVAILTV+ERIAD  V W PMYGELKLALFIYLWYP+T
Sbjct: 34 IIVAILTVVERIADAFVGWFPMYGELKLALFIYLWYPET 72

[Close]
BLAST of CmoCh14G003380 vs. TrEMBL
Match: W9RPT5_9ROSA (HVA22-like protein OS=Morus notabilis GN=L484_018845 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.4e-09
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTKVAKAV 97
          I+VAIL+V+ERI D  ++WMPMYGELKLALFIYLWYP TK ++ V
Sbjct: 34 ILVAILSVLERIGDAFISWMPMYGELKLALFIYLWYPNTKGSEYV 78

[Close]
BLAST of CmoCh14G003380 vs. TrEMBL
Match: B9SVY7_RICCO (HVA22-like protein OS=Ricinus communis GN=RCOM_0225650 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 29/41 (70.73%), Postives = 37/41 (90.24%), Query Frame = 1 

Query: 51 QIIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          +II+A+LTV+ERI D  ++W+PMYGE+KLA FIYLWYPKTK
Sbjct: 7  RIIIALLTVVERIGDIFISWLPMYGEIKLAFFIYLWYPKTK 47

[Close]
BLAST of CmoCh14G003380 vs. TrEMBL
Match: A0A118JTJ6_CYNCS (HVA22-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_007572 PE=3 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 2.3e-09
Identity = 40/91 (43.96%), Postives = 51/91 (56.04%), Query Frame = 1 

Query: 1  MHIQRFNATKRLCRAGFISESFNSGVNFGNNESIFALPFGGMVDNFCPDLQIIVAILTVI 60
          MHIQ  +A+ +  R   IS    S   FG N  I    +            I+VA+LTV 
Sbjct: 1  MHIQPMSASNQWRRTSLIS----SNSAFGANTGIIMCCW------------ILVAVLTVC 60

Query: 61 ERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          ERI DT ++W+PMY E KLA ++YLWYPKTK
Sbjct: 61 ERIGDTFISWVPMYSEAKLAFYVYLWYPKTK 75

[Close]
BLAST of CmoCh14G003380 vs. TAIR10
Match: AT1G75700.1 (AT1G75700.1 HVA22-like protein G)

HSP 1 Score: 64.3 bits (155), Expect = 5.0e-11
Identity = 29/40 (72.50%), Postives = 33/40 (82.50%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          IIVA LT+ ERI D LV+W+PMY E KLA FIYLW+PKTK
Sbjct: 45 IIVAALTIFERIGDALVSWLPMYSEAKLAFFIYLWFPKTK 84

[Close]
BLAST of CmoCh14G003380 vs. TAIR10
Match: AT5G42560.1 (AT5G42560.1 Abscisic acid-responsive (TB2/DP1, HVA22) family protein)

HSP 1 Score: 62.0 bits (149), Expect = 2.5e-10
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          I+VA LTV ER+ D  V+W+PMY E KLA FIYLWYPKT+
Sbjct: 45 ILVACLTVFERVGDAFVSWVPMYSEAKLAFFIYLWYPKTR 84

[Close]
BLAST of CmoCh14G003380 vs. TAIR10
Match: AT1G19950.1 (AT1G19950.1 HVA22-like protein H (ATHVA22H))

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-09
Identity = 24/40 (60.00%), Postives = 32/40 (80.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          I+VA LT+ ER+ D L +W+P+Y E KLA FIYLW+PKT+
Sbjct: 45 ILVAALTIFERVGDALASWVPLYCEAKLAFFIYLWFPKTR 84

[Close]
BLAST of CmoCh14G003380 vs. TAIR10
Match: AT2G36020.1 (AT2G36020.1 HVA22-like protein J)

HSP 1 Score: 57.8 bits (138), Expect = 4.7e-09
Identity = 21/45 (46.67%), Postives = 35/45 (77.78%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTKVAKAV 97
          I++A+++  ER+ D  ++W+P+YGE+K+  F+YLWYPKTK  + V
Sbjct: 45 ILLALISSFERVGDFFISWLPLYGEMKVVFFVYLWYPKTKGTRHV 89

[Close]
BLAST of CmoCh14G003380 vs. NCBI nr
Match: gi|449437448|ref|XP_004136504.1| (PREDICTED: putative HVA22-like protein g [Cucumis sativus])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          IIVAILTV+ERIADTLVAW+PMYGELKLALFIYLWYPKTK
Sbjct: 45 IIVAILTVVERIADTLVAWLPMYGELKLALFIYLWYPKTK 84

[Close]
BLAST of CmoCh14G003380 vs. NCBI nr
Match: gi|659084458|ref|XP_008442898.1| (PREDICTED: putative HVA22-like protein g [Cucumis melo])

HSP 1 Score: 79.7 bits (195), Expect = 3.3e-12
Identity = 38/40 (95.00%), Postives = 40/40 (100.00%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTK 92
          IIVAILTV+ERIADTLVAW+PMYGELKLALFIYLWYPKTK
Sbjct: 45 IIVAILTVVERIADTLVAWLPMYGELKLALFIYLWYPKTK 84

[Close]
BLAST of CmoCh14G003380 vs. NCBI nr
Match: gi|659084454|ref|XP_008442896.1| (PREDICTED: HVA22-like protein j [Cucumis melo])

HSP 1 Score: 72.0 bits (175), Expect = 6.8e-10
Identity = 34/39 (87.18%), Postives = 35/39 (89.74%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKT 91
          IIVAILTV+ERIAD  V W PMYGELKLALFIYLWYPKT
Sbjct: 45 IIVAILTVVERIADVFVGWFPMYGELKLALFIYLWYPKT 83

[Close]
BLAST of CmoCh14G003380 vs. NCBI nr
Match: gi|703131059|ref|XP_010104790.1| (hypothetical protein L484_018845 [Morus notabilis])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 32/45 (71.11%), Postives = 39/45 (86.67%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKTKVAKAV 97
          I+VAIL+V+ERI D  ++WMPMYGELKLALFIYLWYP TK ++ V
Sbjct: 34 ILVAILSVLERIGDAFISWMPMYGELKLALFIYLWYPNTKGSEYV 78

[Close]
BLAST of CmoCh14G003380 vs. NCBI nr
Match: gi|778688858|ref|XP_011652855.1| (PREDICTED: HVA22-like protein i [Cucumis sativus])

HSP 1 Score: 70.5 bits (171), Expect = 2.0e-09
Identity = 33/39 (84.62%), Postives = 35/39 (89.74%), Query Frame = 1 

Query: 52 IIVAILTVIERIADTLVAWMPMYGELKLALFIYLWYPKT 91
          IIVAILTV+ERIAD  V W PMYGELKLALFIYLWYP+T
Sbjct: 41 IIVAILTVVERIADAFVGWFPMYGELKLALFIYLWYPET 79

The following BLAST results are available for this feature:
BLAST of CmoCh14G003380 vs. Swiss-Prot
Match NameE-valueIdentityDescription
HA22G_ARATH8.9e-1072.50Putative HVA22-like protein g OS=Arabidopsis thaliana GN=HVA22G PE=3 SV=2[more]
HA22I_ARATH4.4e-0967.50HVA22-like protein i OS=Arabidopsis thaliana GN=HVA22I PE=2 SV=2[more]
HA22H_ARATH8.3e-0860.00HVA22-like protein h OS=Arabidopsis thaliana GN=HVA22H PE=2 SV=2[more]
HA22J_ARATH8.3e-0846.67HVA22-like protein j OS=Arabidopsis thaliana GN=HVA22J PE=2 SV=2[more]
BLAST of CmoCh14G003380 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LBI5_CUCSA2.3e-1295.00HVA22-like protein OS=Cucumis sativus GN=Csa_3G778390 PE=3 SV=1[more]
A0A0A0LEQ0_CUCSA1.4e-0984.62HVA22-like protein OS=Cucumis sativus GN=Csa_3G778380 PE=3 SV=1[more]
W9RPT5_9ROSA1.4e-0971.11HVA22-like protein OS=Morus notabilis GN=L484_018845 PE=3 SV=1[more]
B9SVY7_RICCO1.8e-0970.73HVA22-like protein OS=Ricinus communis GN=RCOM_0225650 PE=3 SV=1[more]
A0A118JTJ6_CYNCS2.3e-0943.96HVA22-like protein OS=Cynara cardunculus var. scolymus GN=Ccrd_007572 PE=3 SV=1[more]
BLAST of CmoCh14G003380 vs. TAIR10
Match NameE-valueIdentityDescription
AT1G75700.15.0e-1172.50 HVA22-like protein G[more]
AT5G42560.12.5e-1067.50 Abscisic acid-responsive (TB2/DP1, HVA22) family protein[more]
AT1G19950.14.7e-0960.00 HVA22-like protein H (ATHVA22H)[more]
AT2G36020.14.7e-0946.67 HVA22-like protein J[more]
BLAST of CmoCh14G003380 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|449437448|ref|XP_004136504.1|3.3e-1295.00PREDICTED: putative HVA22-like protein g [Cucumis sativus][more]
gi|659084458|ref|XP_008442898.1|3.3e-1295.00PREDICTED: putative HVA22-like protein g [Cucumis melo][more]
gi|659084454|ref|XP_008442896.1|6.8e-1087.18PREDICTED: HVA22-like protein j [Cucumis melo][more]
gi|703131059|ref|XP_010104790.1|2.0e-0971.11hypothetical protein L484_018845 [Morus notabilis][more]
gi|778688858|ref|XP_011652855.1|2.0e-0984.62PREDICTED: HVA22-like protein i [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR004345TB2_DP1_HVA22
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G003380.1CmoCh14G003380.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004345TB2/DP1/HVA22-related proteinPANTHERPTHR12300HVA22-LIKE PROTEINScoord: 52..91
score: 1.7
IPR004345TB2/DP1/HVA22-related proteinPFAMPF03134TB2_DP1_HVA22coord: 52..96
score: 9.2
NoneNo IPR availablePANTHERPTHR12300:SF44SUBFAMILY NOT NAMEDcoord: 52..91
score: 1.7

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G003380Cucurbita moschata (Rifu)cmocmoB210
CmoCh14G003380Cucurbita moschata (Rifu)cmocmoB214
CmoCh14G003380Cucurbita moschata (Rifu)cmocmoB217
CmoCh14G003380Cucurbita moschata (Rifu)cmocmoB222
CmoCh14G003380Cucurbita moschata (Rifu)cmocmoB228
CmoCh14G003380Cucumber (Gy14) v1cgycmoB0146
CmoCh14G003380Cucumber (Gy14) v1cgycmoB0675
CmoCh14G003380Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G003380Cucurbita maxima (Rimu)cmacmoB640
CmoCh14G003380Cucurbita maxima (Rimu)cmacmoB792
CmoCh14G003380Cucurbita maxima (Rimu)cmacmoB848
CmoCh14G003380Wild cucumber (PI 183967)cmocpiB229
CmoCh14G003380Wild cucumber (PI 183967)cmocpiB261
CmoCh14G003380Wild cucumber (PI 183967)cmocpiB262
CmoCh14G003380Cucumber (Chinese Long) v2cmocuB226
CmoCh14G003380Cucumber (Chinese Long) v2cmocuB253
CmoCh14G003380Cucumber (Chinese Long) v2cmocuB256
CmoCh14G003380Melon (DHL92) v3.5.1cmomeB215
CmoCh14G003380Melon (DHL92) v3.5.1cmomeB224
CmoCh14G003380Melon (DHL92) v3.5.1cmomeB236
CmoCh14G003380Watermelon (Charleston Gray)cmowcgB207
CmoCh14G003380Watermelon (Charleston Gray)cmowcgB211
CmoCh14G003380Watermelon (97103) v1cmowmB214
CmoCh14G003380Watermelon (97103) v1cmowmB237
CmoCh14G003380Cucurbita pepo (Zucchini)cmocpeB218
CmoCh14G003380Cucurbita pepo (Zucchini)cmocpeB228
CmoCh14G003380Cucurbita pepo (Zucchini)cmocpeB240
CmoCh14G003380Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G003380Cucurbita pepo (Zucchini)cmocpeB259
CmoCh14G003380Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G003380Bottle gourd (USVL1VR-Ls)cmolsiB215
CmoCh14G003380Bottle gourd (USVL1VR-Ls)cmolsiB218
CmoCh14G003380Cucumber (Gy14) v2cgybcmoB279
CmoCh14G003380Cucumber (Gy14) v2cgybcmoB713
CmoCh14G003380Melon (DHL92) v3.6.1cmomedB244
CmoCh14G003380Melon (DHL92) v3.6.1cmomedB253
CmoCh14G003380Melon (DHL92) v3.6.1cmomedB268
CmoCh14G003380Silver-seed gourdcarcmoB0334
CmoCh14G003380Silver-seed gourdcarcmoB0347
CmoCh14G003380Silver-seed gourdcarcmoB0557
CmoCh14G003380Silver-seed gourdcarcmoB0833
CmoCh14G003380Silver-seed gourdcarcmoB1088
CmoCh14G003380Silver-seed gourdcarcmoB1229
CmoCh14G003380Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G003380Cucumber (Chinese Long) v3cmocucB0302
CmoCh14G003380Cucumber (Chinese Long) v3cmocucB0303
CmoCh14G003380Watermelon (97103) v2cmowmbB230
CmoCh14G003380Watermelon (97103) v2cmowmbB235
CmoCh14G003380Wax gourdcmowgoB0284
CmoCh14G003380Wax gourdcmowgoB0289
CmoCh14G003380Wax gourdcmowgoB0339
CmoCh14G003380Wax gourdcmowgoB0346