CmoCh14G003140 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh14G003140
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr14 : 1441357 .. 1441987 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGTAATTTTAACTTTTAGGTTTAGAAATTAAAATTTTATTTTAAGGAATTAAGAAAAATGTATTTAAAAGTTAGAGTATAAAATAATTTTGAAAATTAAAAATAAGTTTCAATAATGATTGAAAAGATTATTAGACGAACACACCCTCGCTCTCATCATGGTCATTCCTTAATTAGAAACGCATGATCATTCTATAAATTAGCCGAGGTGGACTTTCATCGTCCAACAAAGATAATATATTAAAAAAATATAAAACTACGTTAGGTTTAGGTTAAATATAAAGTAAAATTATATTGAAGAAGAAAGTGTTTGTTGGGAAATCTCAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

mRNA sequence

ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

Coding sequence (CDS)

ATGGCAAGCTCAGGCAGAGATGGCGGAGTAACCAATGCAGCAGGTTCCCGGTTTCCGGCGGACGGTGAGAGAGAGTTAAATCCCGGCCAAAACAAGCACGTTGACGTGGATCCCATTTCCTCGGAAGCTGCTGCATCTTTGGTTATTAAGGAGCAAGAGAAGAGAAAAGCAGCTGAAGAAGAACGAAACCGGGTGAAGAAGATGGAAGCGATGCAGACATTGAAGATGCCGTTCATCGTCTCCAGCGTCATCGCCGCCGTAGCGGTGGTCGCCTTCGCCATTGTTAAGAACTTGCGAGAAAACTGA

Homology

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BLAST of CmoCh14G003140 vs. TrEMBL
Match: A0A0A0LBF7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777020 PE=4 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.2e-21
Identity = 70/103 (67.96%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 1   MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           M S GRDG         FPA D ERELNPG NKHV+VDP+SS+ A SL  KE EKRKAAE
Sbjct: 1   MGSQGRDG-------EGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAE 60

Query: 61  EERNRV-KKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           +ER R  KK EAMQTLK  FIVS +IAAVAV AFAIVK LREN
Sbjct: 61  DERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CmoCh14G003140 vs. TrEMBL
Match: A0A059DKN8_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02998 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 7.1e-11
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           MAS     G++ A+   FP AD E ELNPGQN  V+VDP+SS  AASL +KEQ   +AA+
Sbjct: 1   MASPKAANGISEASNQTFPIADVENELNPGQNTKVEVDPVSSAVAASLEVKEQ--TEAAQ 60

Query: 61  EERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE 101
           +++ R K  +AMQ+LK   ++S+ + AVA   FAI + LRE
Sbjct: 61  QQKEREK--DAMQSLKSAILISAAVVAVAGAIFAITRKLRE 97

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BLAST of CmoCh14G003140 vs. TrEMBL
Match: D7LU93_ARALL (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_485631 PE=4 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 2.7e-10
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 18  FP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKM 77
           FP  D E ELNPGQNK+ +VDP+SSE AA  V K  EKR+ A+ +R      +A QTLK 
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIAAEKVQKNVEKRENAKAKR------DAAQTLKK 67

Query: 78  PFIVSSVIAAVAVVAFAIVKNLREN 102
             I+S+VI AVA  AFAI K L+EN
Sbjct: 68  TIIISAVIVAVAGAAFAITKKLKEN 86

[Close]

BLAST of CmoCh14G003140 vs. TrEMBL
Match: B9SWF8_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0292960 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 47/83 (56.63%), Postives = 59/83 (71.08%), Query Frame = 1


Query: 16 SRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTL 75
          S FPA D E+ELNPGQNK+ +VD +SS+ AAS  IKE+E     ++ER   +K + MQTL
Sbjct: 10 STFPAADLEKELNPGQNKNFEVDTVSSDIAASKEIKEREADTQKKKER---EKRDTMQTL 69

Query: 76 KMPFIVSSVIAAVAVVAFAIVKN 98
          K   +VS+VIAAVA  AFAI KN
Sbjct: 70 KTTILVSAVIAAVAGAAFAITKN 89

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BLAST of CmoCh14G003140 vs. TrEMBL
Match: A0A068V4I4_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00043165001 PE=4 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 1.8e-09
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 15  GSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQT 74
           G  FPA D E+ELNPG+NK+ +VDP+SSE A SL IKEQ   +AAE++ N  +K +A+  
Sbjct: 5   GDAFPAADAEKELNPGENKNFEVDPVSSEVATSLQIKEQ--IEAAEKKEN--EKKDALDK 64

Query: 75  LKMPFIVSSVIAAVAVVAFAIVKNLRE 101
            K   +VS ++ A+A   FAIVK L+E
Sbjct: 65  FKSAILVSGIVVALAGAVFAIVKKLKE 87

[Close]

BLAST of CmoCh14G003140 vs. TAIR10
Match: AT3G52620.1 (AT3G52620.1 unknown protein)

HSP 1 Score: 67.4 bits (163), Expect = 5.8e-12
Identity = 45/85 (52.94%), Postives = 56/85 (65.88%), Query Frame = 1


Query: 18  FP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKM 77
           FP  D E ELNPGQNK+ +VDP+SSE A+  V K  EKR+ A+ +R      +  +TLK 
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIASEKVQKIVEKRENAKAKR------DGARTLKN 67

Query: 78  PFIVSSVIAAVAVVAFAIVKNLREN 102
             IVS+VI AVA  AFAI K L+EN
Sbjct: 68  TIIVSAVIVAVAGAAFAITKKLKEN 86

[Close]

BLAST of CmoCh14G003140 vs. NCBI nr
Match: gi|778684327|ref|XP_011652018.1| (PREDICTED: uncharacterized protein LOC105434975 [Cucumis sativus])

HSP 1 Score: 110.5 bits (275), Expect = 1.7e-21
Identity = 70/103 (67.96%), Postives = 75/103 (72.82%), Query Frame = 1


Query: 1   MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           M S GRDG         FPA D ERELNPG NKHV+VDP+SS+ A SL  KE EKRKAAE
Sbjct: 1   MGSQGRDG-------EGFPAVDVERELNPGDNKHVEVDPVSSQVATSLEAKEHEKRKAAE 60

Query: 61  EERNRV-KKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           +ER R  KK EAMQTLK  FIVS +IAAVAV AFAIVK LREN
Sbjct: 61  DERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CmoCh14G003140 vs. NCBI nr
Match: gi|659084374|ref|XP_008442853.1| (PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo])

HSP 1 Score: 109.8 bits (273), Expect = 2.9e-21
Identity = 71/103 (68.93%), Postives = 74/103 (71.84%), Query Frame = 1


Query: 1   MASSGRDGGVTNAAGSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           M S GRDG         FPA D ERELNPG NKHV+VDPISS+ A SL  KE EKR AAE
Sbjct: 1   MGSQGRDG-------EGFPAVDVERELNPGDNKHVEVDPISSQVATSLEAKEHEKRTAAE 60

Query: 61  EERNRV-KKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLREN 102
           EER R  KK EAMQTLK  FIVS +IAAVAV AFAIVK LREN
Sbjct: 61  EERKRAKKKKEAMQTLKTTFIVSGIIAAVAVAAFAIVKKLREN 96

[Close]

BLAST of CmoCh14G003140 vs. NCBI nr
Match: gi|702255396|ref|XP_010025531.1| (PREDICTED: uncharacterized protein LOC104415844 [Eucalyptus grandis])

HSP 1 Score: 74.7 bits (182), Expect = 1.0e-10
Identity = 49/101 (48.51%), Postives = 67/101 (66.34%), Query Frame = 1


Query: 1   MASSGRDGGVTNAAGSRFP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAE 60
           MAS     G++ A+   FP AD E ELNPGQN  V+VDP+SS  AASL +KEQ   +AA+
Sbjct: 1   MASPKAANGISEASNQTFPIADVENELNPGQNTKVEVDPVSSAVAASLEVKEQ--TEAAQ 60

Query: 61  EERNRVKKMEAMQTLKMPFIVSSVIAAVAVVAFAIVKNLRE 101
           +++ R K  +AMQ+LK   ++S+ + AVA   FAI + LRE
Sbjct: 61  QQKEREK--DAMQSLKSAILISAAVVAVAGAIFAITRKLRE 97

[Close]

BLAST of CmoCh14G003140 vs. NCBI nr
Match: gi|297816554|ref|XP_002876160.1| (hypothetical protein ARALYDRAFT_485631 [Arabidopsis lyrata subsp. lyrata])

HSP 1 Score: 72.8 bits (177), Expect = 3.9e-10
Identity = 47/85 (55.29%), Postives = 57/85 (67.06%), Query Frame = 1


Query: 18  FP-ADGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQTLKM 77
           FP  D E ELNPGQNK+ +VDP+SSE AA  V K  EKR+ A+ +R      +A QTLK 
Sbjct: 8   FPEGDAEAELNPGQNKNFEVDPVSSEIAAEKVQKNVEKRENAKAKR------DAAQTLKK 67

Query: 78  PFIVSSVIAAVAVVAFAIVKNLREN 102
             I+S+VI AVA  AFAI K L+EN
Sbjct: 68  TIIISAVIVAVAGAAFAITKKLKEN 86

[Close]

BLAST of CmoCh14G003140 vs. NCBI nr
Match: gi|661881049|emb|CDP15434.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 70.1 bits (170), Expect = 2.5e-09
Identity = 44/87 (50.57%), Postives = 60/87 (68.97%), Query Frame = 1


Query: 15  GSRFPA-DGERELNPGQNKHVDVDPISSEAAASLVIKEQEKRKAAEEERNRVKKMEAMQT 74
           G  FPA D E+ELNPG+NK+ +VDP+SSE A SL IKEQ   +AAE++ N  +K +A+  
Sbjct: 5   GDAFPAADAEKELNPGENKNFEVDPVSSEVATSLQIKEQ--IEAAEKKEN--EKKDALDK 64

Query: 75  LKMPFIVSSVIAAVAVVAFAIVKNLRE 101
            K   +VS ++ A+A   FAIVK L+E
Sbjct: 65  FKSAILVSGIVVALAGAVFAIVKKLKE 87

The following BLAST results are available for this feature:

BLAST of CmoCh14G003140 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh14G003140 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LBF7_CUCSA	1.2e-21	67.96	Uncharacterized protein OS=Cucumis sativus GN=Csa_3G777020 PE=4 SV=1	[more]
A0A059DKN8_EUCGR	7.1e-11	48.51	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A02998 PE=4 SV=1	[more]
D7LU93_ARALL	2.7e-10	55.29	Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRA...	[more]
B9SWF8_RICCO	1.8e-09	56.63	Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0292960 PE=4 SV=1	[more]
A0A068V4I4_COFCA	1.8e-09	50.57	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00043165001 PE=4 SV=1	[more]

BLAST of CmoCh14G003140 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G52620.1	5.8e-12	52.94	unknown protein	[more]

BLAST of CmoCh14G003140 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778684327\|ref\|XP_011652018.1\|	1.7e-21	67.96	PREDICTED: uncharacterized protein LOC105434975 [Cucumis sativus]	[more]
gi\|659084374\|ref\|XP_008442853.1\|	2.9e-21	68.93	PREDICTED: uncharacterized protein LOC103486621 [Cucumis melo]	[more]
gi\|702255396\|ref\|XP_010025531.1\|	1.0e-10	48.51	PREDICTED: uncharacterized protein LOC104415844 [Eucalyptus grandis]	[more]
gi\|297816554\|ref\|XP_002876160.1\|	3.9e-10	55.29	hypothetical protein ARALYDRAFT_485631 [Arabidopsis lyrata subsp. lyrata]	[more]
gi\|661881049\|emb\|CDP15434.1\|	2.5e-09	50.57	unnamed protein product [Coffea canephora]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh14G003140.1	CmoCh14G003140.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	unknown	Coil	Coil	coord: 48..71 scor
None	No IPR available	PANTHER	PTHR37741	FAMILY NOT NAMED	coord: 7..101 score: 6.7
None	No IPR available	PANTHER	PTHR37741:SF1	SUBFAMILY NOT NAMED	coord: 7..101 score: 6.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh14G003140	CmaCh14G003190	Cucurbita maxima (Rimu)	cmacmoB244
CmoCh14G003140	CmaCh06G004810	Cucurbita maxima (Rimu)	cmacmoB792
CmoCh14G003140	Cla017681	Watermelon (97103) v1	cmowmB214
CmoCh14G003140	ClCG10G018870	Watermelon (Charleston Gray)	cmowcgB207
CmoCh14G003140	CsaV3_3G037370	Cucumber (Chinese Long) v3	cmocucB0270
CmoCh14G003140	Carg03663	Silver-seed gourd	carcmoB0347

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh14G003140	CmoCh06G004830	Cucurbita moschata (Rifu)	cmocmoB222

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh14G003140	Cucurbita moschata (Rifu)	cmocmoB210
CmoCh14G003140	Cucurbita moschata (Rifu)	cmocmoB214
CmoCh14G003140	Cucurbita moschata (Rifu)	cmocmoB217
CmoCh14G003140	Cucurbita moschata (Rifu)	cmocmoB228
CmoCh14G003140	Cucumber (Gy14) v1	cgycmoB0146
CmoCh14G003140	Cucumber (Gy14) v1	cgycmoB0675
CmoCh14G003140	Cucurbita maxima (Rimu)	cmacmoB640
CmoCh14G003140	Cucurbita maxima (Rimu)	cmacmoB848
CmoCh14G003140	Wild cucumber (PI 183967)	cmocpiB229
CmoCh14G003140	Cucumber (Chinese Long) v2	cmocuB226
CmoCh14G003140	Cucumber (Chinese Long) v2	cmocuB253
CmoCh14G003140	Melon (DHL92) v3.5.1	cmomeB215
CmoCh14G003140	Melon (DHL92) v3.5.1	cmomeB236
CmoCh14G003140	Watermelon (Charleston Gray)	cmowcgB211
CmoCh14G003140	Watermelon (Charleston Gray)	cmowcgB214
CmoCh14G003140	Watermelon (97103) v1	cmowmB236
CmoCh14G003140	Watermelon (97103) v1	cmowmB237
CmoCh14G003140	Cucurbita pepo (Zucchini)	cmocpeB218
CmoCh14G003140	Cucurbita pepo (Zucchini)	cmocpeB228
CmoCh14G003140	Cucurbita pepo (Zucchini)	cmocpeB240
CmoCh14G003140	Cucurbita pepo (Zucchini)	cmocpeB245
CmoCh14G003140	Cucurbita pepo (Zucchini)	cmocpeB259
CmoCh14G003140	Bottle gourd (USVL1VR-Ls)	cmolsiB230
CmoCh14G003140	Bottle gourd (USVL1VR-Ls)	cmolsiB215
CmoCh14G003140	Bottle gourd (USVL1VR-Ls)	cmolsiB218
CmoCh14G003140	Cucumber (Gy14) v2	cgybcmoB279
CmoCh14G003140	Melon (DHL92) v3.6.1	cmomedB244
CmoCh14G003140	Melon (DHL92) v3.6.1	cmomedB268
CmoCh14G003140	Silver-seed gourd	carcmoB0203
CmoCh14G003140	Silver-seed gourd	carcmoB0334
CmoCh14G003140	Silver-seed gourd	carcmoB0557
CmoCh14G003140	Silver-seed gourd	carcmoB0833
CmoCh14G003140	Silver-seed gourd	carcmoB1088
CmoCh14G003140	Cucumber (Chinese Long) v3	cmocucB0302
CmoCh14G003140	Watermelon (97103) v2	cmowmbB239
CmoCh14G003140	Watermelon (97103) v2	cmowmbB230
CmoCh14G003140	Watermelon (97103) v2	cmowmbB235
CmoCh14G003140	Wax gourd	cmowgoB0284
CmoCh14G003140	Wax gourd	cmowgoB0341
CmoCh14G003140	Wax gourd	cmowgoB0346