CmoCh14G002560 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh14G002560
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionPlant/T32M21-140 protein
LocationCmo_Chr14 : 1168354 .. 1168742 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTATTGTGCTCACGGCGGACCTGTCGAGGGAAATGGAGGTTCTAGCCGCGGTTGAACGAAATTTGAGGAGGAACACGACGATTTTTTCCTTCGCCGGCGGCGGTGGAAAATCGTTCAATTACCGTGGCACCGCCGTCGTGTTCAGAGCTTGAAATTGTTGACCCCTTCGAACAGAACATTCAATTACATTCTTAATTATACTGTTACAGAACGAATCAAAATTGTGTTCGGGGTTAACGAAATGCGGCTGCCGGAGGACAGCGCAAAGAAATTCACCGGCTGCCGTATCCCGGCGGATAATTGCAGGAGATCGGAGCTTGAAGAACAGGGGGGAAAAAACAGAATTAAATTAAATTAA

mRNA sequence

ATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTATTGTGCTCACGGCGGACCTGTCGAGGGAAATGGAGGTTCTAGCCGCGGTTGAACGAAATTTGAGGAGGAACACGACGATTTTTTCCTTCGCCGGCGGCGGTGGAAAATCGTTCAATTACCGTGGCACCGCCGTCAGCTTGAAATTGTTGACCCCTTCGAACAGAACATTCAATTACATTCTTAATTATACTGTTACAGAACGAATCAAAATTGTGTTCGGGGTTAACGAAATGCGGCTGCCGGAGGACAGCGCAAAGAAATTCACCGGCTGCCGTATCCCGGCGGATAATTGCAGGAGATCGGAGCTTGAAGAACAGGGGGGAAAAAACAGAATTAAATTAAATTAA

Coding sequence (CDS)

ATGGACAGAAGAGTGAAGAAAATGCAGAAGTTTATTGTGCTCACGGCGGACCTGTCGAGGGAAATGGAGGTTCTAGCCGCGGTTGAACGAAATTTGAGGAGGAACACGACGATTTTTTCCTTCGCCGGCGGCGGTGGAAAATCGTTCAATTACCGTGGCACCGCCGTCAGCTTGAAATTGTTGACCCCTTCGAACAGAACATTCAATTACATTCTTAATTATACTGTTACAGAACGAATCAAAATTGTGTTCGGGGTTAACGAAATGCGGCTGCCGGAGGACAGCGCAAAGAAATTCACCGGCTGCCGTATCCCGGCGGATAATTGCAGGAGATCGGAGCTTGAAGAACAGGGGGGAAAAAACAGAATTAAATTAAATTAA
Homology
[Close]
BLAST of CmoCh14G002560 vs. TrEMBL
Match: A0A0A0LB89_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_3G748280 PE=4 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.1e-24
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRRNTTIFSFAGGGGKSFNY-------RG 60
           MDRRVKKMQ+F+VLT +L RE+E+LA VE+NL+R TTIFSF+GG GKSF +       R 
Sbjct: 163 MDRRVKKMQRFVVLTVELWREIEILAEVEQNLKRTTTIFSFSGGAGKSFKFRKKISWHRR 222

Query: 61  TAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPEDSAKKFTGCRIPAD 120
            A SLKL+TP NRTFNYIL        T+ ERIKIVF V EMR  EDS  K       + 
Sbjct: 223 RAQSLKLMTPWNRTFNYILRLFMRSMVTIIERIKIVFEVKEMRRSEDSRDK-------SA 282

[Close]
BLAST of CmoCh14G002560 vs. TrEMBL
Match: W9SB40_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_012792 PE=4 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 3.9e-06
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR--------NTTIFSFAGGGGKSFNYR 60
           M+++VKKM++FI +T  LS E +VLA +E+ LRR           +  F     K    R
Sbjct: 127 MEKKVKKMERFIAVTMQLSHEQDVLAELEQTLRRMQFNAQLDRVKLLEFQ---QKVMWQR 186

Query: 61  GTAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPED 95
               +L+ ++P  RT++Y++       +T+ ERIK+VFGVN+M   E+
Sbjct: 187 QEVKNLRGMSPWVRTYDYVVRLMARSLFTILERIKLVFGVNQMASEEE 231

[Close]
BLAST of CmoCh14G002560 vs. TrEMBL
Match: A0A061F0R0_THECC (Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_022418 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-06
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR-----NTTIFSFAGGGGKSFNYRGTA 60
           M+R+VKKM++F+ +T  L++E+EVLA +E+ LRR      +          K    R   
Sbjct: 139 MERKVKKMERFVAVTMQLTQELEVLAELEQTLRRMQRNAESDRVKLLESQQKVMWQRQEV 198

Query: 61  VSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEM 90
            +L+ ++P  RT++YI+        T+ ERIKIVFG N+M
Sbjct: 199 KNLREMSPWIRTYDYIVRLLLRSLLTILERIKIVFGTNQM 238

[Close]
BLAST of CmoCh14G002560 vs. TrEMBL
Match: A0A061ETE7_THECC (Uncharacterized protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_022418 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-06
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR-----NTTIFSFAGGGGKSFNYRGTA 60
           M+R+VKKM++F+ +T  L++E+EVLA +E+ LRR      +          K    R   
Sbjct: 221 MERKVKKMERFVAVTMQLTQELEVLAELEQTLRRMQRNAESDRVKLLESQQKVMWQRQEV 280

Query: 61  VSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEM 90
            +L+ ++P  RT++YI+        T+ ERIKIVFG N+M
Sbjct: 281 KNLREMSPWIRTYDYIVRLLLRSLLTILERIKIVFGTNQM 320

[Close]
BLAST of CmoCh14G002560 vs. TrEMBL
Match: A0A061ESS0_THECC (Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_022418 PE=4 SV=1)

HSP 1 Score: 58.5 bits (140), Expect = 6.6e-06
Identity = 37/100 (37.00%), Postives = 58/100 (58.00%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR-----NTTIFSFAGGGGKSFNYRGTA 60
           M+R+VKKM++F+ +T  L++E+EVLA +E+ LRR      +          K    R   
Sbjct: 58  MERKVKKMERFVAVTMQLTQELEVLAELEQTLRRMQRNAESDRVKLLESQQKVMWQRQEV 117

Query: 61  VSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEM 90
            +L+ ++P  RT++YI+        T+ ERIKIVFG N+M
Sbjct: 118 KNLREMSPWIRTYDYIVRLLLRSLLTILERIKIVFGTNQM 157

[Close]
BLAST of CmoCh14G002560 vs. NCBI nr
Match: gi|659085754|ref|XP_008443584.1| (PREDICTED: uncharacterized protein LOC103487141 [Cucumis melo])

HSP 1 Score: 127.5 bits (319), Expect = 1.7e-26
Identity = 77/133 (57.89%), Postives = 89/133 (66.92%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRRNTTIFSFAGGGGKSFN-------YRG 60
           MDRR+KKMQ+FIVLT +L REME+LA VE+NL+R TTIFSF+GGGGKSF        +R 
Sbjct: 163 MDRRMKKMQRFIVLTVELWREMEILAEVEKNLKRTTTIFSFSGGGGKSFKIRKKISWHRR 222

Query: 61  TAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPEDSAKKFTGCRIPAD 120
            A SLKL+TP NRTF+YIL        T+ ERIKIVF V EMR  ED   K     + A 
Sbjct: 223 RAQSLKLMTPWNRTFDYILRLFMRSMITIIERIKIVFEVKEMRRSEDREDKSADRHVVAV 282

[Close]
BLAST of CmoCh14G002560 vs. NCBI nr
Match: gi|778688835|ref|XP_011652850.1| (PREDICTED: uncharacterized protein LOC105435128 [Cucumis sativus])

HSP 1 Score: 120.9 bits (302), Expect = 1.6e-24
Identity = 75/133 (56.39%), Postives = 88/133 (66.17%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRRNTTIFSFAGGGGKSFNY-------RG 60
           MDRRVKKMQ+F+VLT +L RE+E+LA VE+NL+R TTIFSF+GG GKSF +       R 
Sbjct: 163 MDRRVKKMQRFVVLTVELWREIEILAEVEQNLKRTTTIFSFSGGAGKSFKFRKKISWHRR 222

Query: 61  TAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPEDSAKKFTGCRIPAD 120
            A SLKL+TP NRTFNYIL        T+ ERIKIVF V EMR  EDS  K       + 
Sbjct: 223 RAQSLKLMTPWNRTFNYILRLFMRSMVTIIERIKIVFEVKEMRRSEDSRDK-------SA 282

[Close]
BLAST of CmoCh14G002560 vs. NCBI nr
Match: gi|694413206|ref|XP_009334876.1| (PREDICTED: uncharacterized protein LOC103927660 [Pyrus x bretschneideri])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR--------NTTIFSFAGGGGKSFNYR 60
           M+R+VKKM+KF+  T  LS+E+EVLA +E+ LRR           +  F     K    R
Sbjct: 137 MERKVKKMEKFVEATMQLSQELEVLAELEQTLRRMRANPEVNRVKLLEFQ---QKVMWRR 196

Query: 61  GTAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPE 94
                L+ ++P +RT++YI+       +T+ ERIK+VFG N+M L E
Sbjct: 197 QQVKILQDMSPWSRTYDYIVRLLARSLFTMLERIKLVFGFNQMALGE 240

[Close]
BLAST of CmoCh14G002560 vs. NCBI nr
Match: gi|694430566|ref|XP_009342755.1| (PREDICTED: uncharacterized protein LOC103934733 [Pyrus x bretschneideri])

HSP 1 Score: 60.1 bits (144), Expect = 3.3e-06
Identity = 41/107 (38.32%), Postives = 61/107 (57.01%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR--------NTTIFSFAGGGGKSFNYR 60
           M+R+VKKM+KF+  T  LS+E+EVLA +E+ LRR           +  F     K    R
Sbjct: 137 MERKVKKMEKFVEATMQLSQELEVLAELEQTLRRMRANPEVNQVKLLEFQ---QKVMWRR 196

Query: 61  GTAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPE 94
                L+ ++P +RT++YI+       +T+ ERIK+VFG N+M L E
Sbjct: 197 QEVKILQDMSPWSRTYDYIVRLLARSLFTMLERIKLVFGFNQMALGE 240

[Close]
BLAST of CmoCh14G002560 vs. NCBI nr
Match: gi|703160399|ref|XP_010112514.1| (hypothetical protein L484_012792 [Morus notabilis])

HSP 1 Score: 59.3 bits (142), Expect = 5.6e-06
Identity = 38/108 (35.19%), Postives = 61/108 (56.48%), Query Frame = 1 

Query: 1   MDRRVKKMQKFIVLTADLSREMEVLAAVERNLRR--------NTTIFSFAGGGGKSFNYR 60
           M+++VKKM++FI +T  LS E +VLA +E+ LRR           +  F     K    R
Sbjct: 127 MEKKVKKMERFIAVTMQLSHEQDVLAELEQTLRRMQFNAQLDRVKLLEFQ---QKVMWQR 186

Query: 61  GTAVSLKLLTPSNRTFNYILN------YTVTERIKIVFGVNEMRLPED 95
               +L+ ++P  RT++Y++       +T+ ERIK+VFGVN+M   E+
Sbjct: 187 QEVKNLRGMSPWVRTYDYVVRLMARSLFTILERIKLVFGVNQMASEEE 231

The following BLAST results are available for this feature:
BLAST of CmoCh14G002560 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh14G002560 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LB89_CUCSA1.1e-2456.39Uncharacterized protein OS=Cucumis sativus GN=Csa_3G748280 PE=4 SV=1[more]
W9SB40_9ROSA3.9e-0635.19Uncharacterized protein OS=Morus notabilis GN=L484_012792 PE=4 SV=1[more]
A0A061F0R0_THECC6.6e-0637.00Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_022418 PE=4 SV=1[more]
A0A061ETE7_THECC6.6e-0637.00Uncharacterized protein isoform 3 (Fragment) OS=Theobroma cacao GN=TCM_022418 PE... [more]
A0A061ESS0_THECC6.6e-0637.00Uncharacterized protein isoform 2 OS=Theobroma cacao GN=TCM_022418 PE=4 SV=1[more]
BLAST of CmoCh14G002560 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh14G002560 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659085754|ref|XP_008443584.1|1.7e-2657.89PREDICTED: uncharacterized protein LOC103487141 [Cucumis melo][more]
gi|778688835|ref|XP_011652850.1|1.6e-2456.39PREDICTED: uncharacterized protein LOC105435128 [Cucumis sativus][more]
gi|694413206|ref|XP_009334876.1|3.3e-0638.32PREDICTED: uncharacterized protein LOC103927660 [Pyrus x bretschneideri][more]
gi|694430566|ref|XP_009342755.1|3.3e-0638.32PREDICTED: uncharacterized protein LOC103934733 [Pyrus x bretschneideri][more]
gi|703160399|ref|XP_010112514.1|5.6e-0635.19hypothetical protein L484_012792 [Morus notabilis][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh14G002560.1CmoCh14G002560.1mRNA


Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh14G002560Melon (DHL92) v3.5.1cmomeB215
CmoCh14G002560Melon (DHL92) v3.5.1cmomeB236
CmoCh14G002560Watermelon (Charleston Gray)cmowcgB207
CmoCh14G002560Watermelon (Charleston Gray)cmowcgB211
CmoCh14G002560Watermelon (Charleston Gray)cmowcgB214
CmoCh14G002560Watermelon (97103) v1cmowmB214
CmoCh14G002560Watermelon (97103) v1cmowmB236
CmoCh14G002560Watermelon (97103) v1cmowmB237
CmoCh14G002560Cucurbita pepo (Zucchini)cmocpeB218
CmoCh14G002560Cucurbita pepo (Zucchini)cmocpeB240
CmoCh14G002560Cucurbita pepo (Zucchini)cmocpeB245
CmoCh14G002560Cucurbita pepo (Zucchini)cmocpeB259
CmoCh14G002560Bottle gourd (USVL1VR-Ls)cmolsiB230
CmoCh14G002560Bottle gourd (USVL1VR-Ls)cmolsiB215
CmoCh14G002560Bottle gourd (USVL1VR-Ls)cmolsiB218
CmoCh14G002560Cucumber (Gy14) v2cgybcmoB279
CmoCh14G002560Cucumber (Gy14) v2cgybcmoB712
CmoCh14G002560Cucumber (Gy14) v2cgybcmoB715
CmoCh14G002560Melon (DHL92) v3.6.1cmomedB224
CmoCh14G002560Melon (DHL92) v3.6.1cmomedB244
CmoCh14G002560Melon (DHL92) v3.6.1cmomedB268
CmoCh14G002560Silver-seed gourdcarcmoB0214
CmoCh14G002560Silver-seed gourdcarcmoB0334
CmoCh14G002560Silver-seed gourdcarcmoB0347
CmoCh14G002560Silver-seed gourdcarcmoB0460
CmoCh14G002560Silver-seed gourdcarcmoB1087
CmoCh14G002560Cucumber (Chinese Long) v3cmocucB0270
CmoCh14G002560Cucumber (Chinese Long) v3cmocucB0302
CmoCh14G002560Cucumber (Chinese Long) v3cmocucB0305
CmoCh14G002560Watermelon (97103) v2cmowmbB239
CmoCh14G002560Watermelon (97103) v2cmowmbB230
CmoCh14G002560Watermelon (97103) v2cmowmbB235
CmoCh14G002560Watermelon (97103) v2cmowmbB259
CmoCh14G002560Wax gourdcmowgoB0287
CmoCh14G002560Wax gourdcmowgoB0338
CmoCh14G002560Wax gourdcmowgoB0341
CmoCh14G002560Wax gourdcmowgoB0345
CmoCh14G002560Cucurbita moschata (Rifu)cmocmoB215
CmoCh14G002560Cucurbita moschata (Rifu)cmocmoB217
CmoCh14G002560Cucurbita moschata (Rifu)cmocmoB222
CmoCh14G002560Cucurbita moschata (Rifu)cmocmoB228
CmoCh14G002560Cucumber (Gy14) v1cgycmoB1041
CmoCh14G002560Cucumber (Gy14) v1cgycmoB1062
CmoCh14G002560Cucurbita maxima (Rimu)cmacmoB244
CmoCh14G002560Cucurbita maxima (Rimu)cmacmoB544
CmoCh14G002560Cucurbita maxima (Rimu)cmacmoB640
CmoCh14G002560Cucurbita maxima (Rimu)cmacmoB792
CmoCh14G002560Cucurbita maxima (Rimu)cmacmoB848
CmoCh14G002560Wild cucumber (PI 183967)cmocpiB230
CmoCh14G002560Wild cucumber (PI 183967)cmocpiB259
CmoCh14G002560Cucumber (Chinese Long) v2cmocuB227
CmoCh14G002560Cucumber (Chinese Long) v2cmocuB253
CmoCh14G002560Cucumber (Chinese Long) v2cmocuB255