CmoCh13G011390 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G011390
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Remorin family protein
Location	Cmo_Chr13 : 9229365 .. 9231521 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGCGGGGTTGTGGTGTACTCTCTGATGTTGTAATCGGGAAATTGACGCGCTATTCGCAGGAGAGAACGAAAGAGCGAGAGGATTCGGATCCCGACGGGGATGCCATCTCCGGCAAGAGACGAAAAGTATACTAAGAGATTTCCATTTTCCCACCATATCTTCTCTTACATTCAACTACTCCATAACTAATCTAAAGATCATCCCTGCCCCAAATAAATTTTTATCATAAACTTATGATCATCCATGTTCTTAAACTTGTTCTTTTAACTCTAAAAATCATAGCTTTTGCAGATTTATTAATGATTAATATGGAGAAATCCTTGACGAAAAGAAGGGTTCCATTTTTTAAAATTTGGGAAGTGGGTTAAGTTAAGAAGCTTTTATAAAGTTGTGAGTATAGATTTATCCCAAAAACGAAAAGGAGAAAAAAAAAGTTGATTGCAGATTTATCCAAACACAGAGAAAGAATGAAAAAGGTTGAGTGTAATAGAAATAGAATCAATGGAAGGCGATGAAGAAGAAAATGCCTTGCTTTGGAATGGAGTTGAGTGCAAAGAAGGCATTTCCTTCGCTTCGCAACGTCCCTGCGTAAAGATACAATACATATTAACTTCATAAACAGTTTCAGAAATTTGAGAGGTATCGATATAAGCTTGAGATTTCAGCACATGGAAACTTTGACATTTCAAAGGAGGTATACTTTTCTTATCTCTTGATCTCCATTCCCCAGTTTGAATATTTGATGTATGTTCATCACTCTTTCATCTGGTTCATCATCATTTACAACCCAAAAGGTTTTACAAGGGATAAAATGAAAAGAATCATTGAAACAGAAAAGTAATCAAATCAGATCTCTGAGTCACCATTGGCCAAACTCAGCTCAGCTTAGGTTCTACAACACCAAAGAGTTTCCTCTTCTTGTCCTCTTTTATTTGAATACTGAAAGTAATATGGCTATTGACTGCTTTGTAGGCCGAGTTTTTCGGATTCAGGACGACATAACAAAGATGCTTCCATCAAACCAAGAGATGGAATTCCACAGCAAAAAACAAGATCCTCCAAAGAGGGTACTCATAAAAAGGAGTCCAAGAAGTTACGGTGGTATTTTGCAAACGAAATGAACGAGGATTATGATTCAAGGGATTTAGAGTTTGCCACTGCAGCAGCATCAGCTGCATTTGCAATTCGCTCACAAGAAGAAACTGATTTACAATACCAGAAAAATAAGAGTGGAAGTCTGGAAACGCCCTTAACAAAGGTTAAAACCAGAAAAGATGACATAACCAGGCGACCGTCTAACAAAGAAACAACAAATCCTGGTAAAATTTAAACATAGAGCTTAGAAATTTCCTATAAGAATTTCTTGTCACAAAAGGTATCATGTTCATTACACTAGGCCAATCTTCCATAAAGAAGCCAACGGGACATGAAAAGGACTCAATGACTGGAATTCCTTTATCGCCACCAAGACGAAGCCTTGTAGAAACTAGAGCTGATGTGTGGGAGAGACATAACATGGAGAAGATTAGAAAAAGGTATATACTAATTTCTGCATTAATCAATACTCAGGAGTGGACCTCACAGTTCCAAGTTCTCAAGTTCATTGAACACTTGCAGTTCTTTTCTAAGACAATCTCATATTTCAGGTACGAAAAAATAAAATTGTCAATTCATGCCTGGGAGAATAAGAAGAAAATGCATGCCAAACTTCATAAGGAAAAGAAAATGGTCTTACCCCACCTTTTGGATGTTTTCCTTACTATAATACATTTTAATGTCAACTGAAAAAAACTTCTGTTCGTGAAGGCTGAATTGGAGAACAAAAAGGCACTGTTTCTGCAAAATTACCAGGACAACATAGTACGAATCGACCAGATCACGGAGGGAGCAAGGGCACAACTAGAACAAAAAAGAATAAGGGAAGAGAAGAAAGCAAGAGAAACAGCTAACCGAATCAGGTCGACCGGAAGACTTCCTGTGACTTGTTTCTGCATCCAGTATCACTAACAATGAGACAGTCCTGGTGAAAAGAGAAGCATCAAATCATGCAGCTCCTATTCACTTACACTTCACCTAACAAATTCCAATCCAAAATCAATATCAAGTCATTGTGATGTTGTGTAAATTGTTTCTTATGTTTCTTTCATTGTGGC

mRNA sequence

ATGGTGCGGGGTTGTGGTGTACTCTCTGATGTTGTAATCGGGAAATTGACGCGCTATTCGCAGGAGAGAACGAAAGAGCGAGAGGATTCGGATCCCGACGGGGATGCCATCTCCGGCAAGAGACGAAAAAATCAATGGAAGGCGATGAAGAAGAAAATGCCTTGCTTTGGAATGGAGTTGAGTGCAAAGAAGGCATTTCCTTCGCTTCGCAACGTCCCTGCGCCGAGTTTTTCGGATTCAGGACGACATAACAAAGATGCTTCCATCAAACCAAGAGATGGAATTCCACAGCAAAAAACAAGATCCTCCAAAGAGGGTACTCATAAAAAGGAGTCCAAGAAGTTACGGTGGTATTTTGCAAACGAAATGAACGAGGATTATGATTCAAGGGATTTAGAGTTTGCCACTGCAGCAGCATCAGCTGCATTTGCAATTCGCTCACAAGAAGAAACTGATTTACAATACCAGAAAAATAAGAGTGGAAGTCTGGAAACGCCCTTAACAAAGGTTAAAACCAGAAAAGATGACATAACCAGGCGACCGTCTAACAAAGAAACAACAAATCCTGGCCAATCTTCCATAAAGAAGCCAACGGGACATGAAAAGGACTCAATGACTGGAATTCCTTTATCGCCACCAAGACGAAGCCTTGTAGAAACTAGAGCTGATGTGTGGGAGAGACATAACATGGAGAAGATTAGAAAAAGGTATATACTAATTTCTGCATTAATCAATACTCAGGAGTGGACCTCACAGTTCCAAGTTCTCAAGTTCATTGAACACTTGCAGTACGAAAAAATAAAATTGTCAATTCATGCCTGGGAGAATAAGAAGAAAATGCATGCCAAACTTCATAAGGAAAAGAAAATGGTCTTACCCCACCTTTTGGATGTTTTCCTTACTATAATACATTTTAATGCTGAATTGGAGAACAAAAAGGCACTGTTTCTGCAAAATTACCAGGACAACATAGTACGAATCGACCAGATCACGGAGGGAGCAAGGGCACAACTAGAACAAAAAAGAATAAGGGAAGAGAAGAAAGCAAGAGAAACAGCTAACCGAATCAGGTCGACCGGAAGACTTCCTGTGACTTGTTTCTGCATCCAGTATCACTAACAATGAGACAGTCCTGGTGAAAAGAGAAGCATCAAATCATGCAGCTCCTATTCACTTACACTTCACCTAACAAATTCCAATCCAAAATCAATATCAAGTCATTGTGATGTTGTGTAAATTGTTTCTTATGTTTCTTTCATTGTGGC

Coding sequence (CDS)

ATGGTGCGGGGTTGTGGTGTACTCTCTGATGTTGTAATCGGGAAATTGACGCGCTATTCGCAGGAGAGAACGAAAGAGCGAGAGGATTCGGATCCCGACGGGGATGCCATCTCCGGCAAGAGACGAAAAAATCAATGGAAGGCGATGAAGAAGAAAATGCCTTGCTTTGGAATGGAGTTGAGTGCAAAGAAGGCATTTCCTTCGCTTCGCAACGTCCCTGCGCCGAGTTTTTCGGATTCAGGACGACATAACAAAGATGCTTCCATCAAACCAAGAGATGGAATTCCACAGCAAAAAACAAGATCCTCCAAAGAGGGTACTCATAAAAAGGAGTCCAAGAAGTTACGGTGGTATTTTGCAAACGAAATGAACGAGGATTATGATTCAAGGGATTTAGAGTTTGCCACTGCAGCAGCATCAGCTGCATTTGCAATTCGCTCACAAGAAGAAACTGATTTACAATACCAGAAAAATAAGAGTGGAAGTCTGGAAACGCCCTTAACAAAGGTTAAAACCAGAAAAGATGACATAACCAGGCGACCGTCTAACAAAGAAACAACAAATCCTGGCCAATCTTCCATAAAGAAGCCAACGGGACATGAAAAGGACTCAATGACTGGAATTCCTTTATCGCCACCAAGACGAAGCCTTGTAGAAACTAGAGCTGATGTGTGGGAGAGACATAACATGGAGAAGATTAGAAAAAGGTATATACTAATTTCTGCATTAATCAATACTCAGGAGTGGACCTCACAGTTCCAAGTTCTCAAGTTCATTGAACACTTGCAGTACGAAAAAATAAAATTGTCAATTCATGCCTGGGAGAATAAGAAGAAAATGCATGCCAAACTTCATAAGGAAAAGAAAATGGTCTTACCCCACCTTTTGGATGTTTTCCTTACTATAATACATTTTAATGCTGAATTGGAGAACAAAAAGGCACTGTTTCTGCAAAATTACCAGGACAACATAGTACGAATCGACCAGATCACGGAGGGAGCAAGGGCACAACTAGAACAAAAAAGAATAAGGGAAGAGAAGAAAGCAAGAGAAACAGCTAACCGAATCAGGTCGACCGGAAGACTTCCTGTGACTTGTTTCTGCATCCAGTATCACTAA

Homology

[Close]

BLAST of CmoCh13G011390 vs. TrEMBL
Match: A0A0A0LTG1_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G038990 PE=4 SV=1)

HSP 1 Score: 308.5 bits (789), Expect = 1.1e-80
Identity = 188/307 (61.24%), Postives = 210/307 (68.40%), Query Frame = 1


Query: 76  SFSDSGRHNKDASIKPRDGIPQQKTRSSKEGTHKKESKKLRWYFANEMNEDYDSRDLEFA 135
           SFSDSG+  +D ++KP DGIPQ+KT   K+   KKESK L+WYF+N+ NEDYDS+D+EFA
Sbjct: 11  SFSDSGQQKRDPTVKPSDGIPQKKTSFKKD---KKESKTLQWYFSNQTNEDYDSKDIEFA 70

Query: 136 TAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKD-------DITRRPSNKET-- 195
           TA ASAA AIRSQEETDLQYQK K  S+E  +TKVK+RKD        +TRR S KET  
Sbjct: 71  TAVASAALAIRSQEETDLQYQKKKRESVEASITKVKSRKDGTAALAPSMTRRLSKKETQT 130

Query: 196 TNPGQSSIKKPTGHEK-DSMTGIPLSP--PRRSLVETRADVWERHNMEKIRKRYILISAL 255
           TNPGQSSIKKP G EK +S+TGIP  P  PRRSLV TRADVWER+ MEKI KRY+     
Sbjct: 131 TNPGQSSIKKPMGQEKRESVTGIPKPPAQPRRSLVPTRADVWERNKMEKISKRYL----- 190

Query: 256 INTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKEKKMVLPHLLDVFLTII 315
                                 KIK SI AWEN+KKMHAK H EKK              
Sbjct: 191 ----------------------KIKASILAWENEKKMHAKHHMEKK-------------- 250

Query: 316 HFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEKKARETANRIRSTGRLP 371
              AELE KKALF Q YQ+NI RIDQI  GARAQLE+KR REEKKARETANRIRSTGRLP
Sbjct: 251 --KAELERKKALFQQYYQENIARIDQIAGGARAQLEEKRKREEKKARETANRIRSTGRLP 271

[Close]

BLAST of CmoCh13G011390 vs. TrEMBL
Match: D7SI44_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06920 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 1.2e-31
Identity = 105/270 (38.89%), Postives = 140/270 (51.85%), Query Frame = 1


Query: 123 MNEDYDSRDLEFATAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDDITRRPS 182
           M++DYDS D EFATA A+AAFAI + EE +LQYQK     LET ++++K+RK+D T    
Sbjct: 1   MSKDYDSDDEEFATAVAAAAFAIYTLEEPNLQYQKRTRDGLETSMSRLKSRKEDTTGF-F 60

Query: 183 NKETTNPGQSSIKKPTGHEKDSM-TGIPLSPPRRS-----------------------LV 242
            KET  PG++SI++   +  +SM    P S P ++                        V
Sbjct: 61  GKETQTPGEASIRRQMTNNGNSMENAFPSSRPSKASPVRSVSAAPRDQRQQGYSTSNRSV 120

Query: 243 ETRADVWERHNMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKK 302
           ET+AD WE+  + KI+KR                            + I   I AWEN+K
Sbjct: 121 ETKADAWEKAQITKIKKR---------------------------NDNISSRILAWENEK 180

Query: 303 KMHAKLHKEKKMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQL 362
           KM AKL  E+K                 +ELE +KAL LQ+YQ  I RIDQI  GARAQL
Sbjct: 181 KMRAKLIMERK----------------KSELEQRKALNLQHYQIKIERIDQIAGGARAQL 226

Query: 363 EQKRIREEKKARETANRIRSTGRLPVTCFC 369
           ++KR  EE + +  A  IR TG++PV CFC
Sbjct: 241 QEKRRNEESEVKHKAEMIRKTGKVPVRCFC 226

[Close]

BLAST of CmoCh13G011390 vs. TrEMBL
Match: M5WWQ0_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016826mg PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 2.1e-31
Identity = 101/277 (36.46%), Postives = 140/277 (50.54%), Query Frame = 1


Query: 123 MNEDYDSRDLEFATAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKV-------KTRKD 182
           M+   D++D+EF+TA A+AAFAI S EE  LQYQK    SL+   TK        +    
Sbjct: 1   MSHYSDAQDVEFSTAVAAAAFAIHSNEEARLQYQKGMRKSLQISRTKTLQDAMAGRPSSG 60

Query: 183 DITRRPSNKETTNPGQSSIKKPTGHEKDSMTGI-------------PLSPP--------- 242
           ++ RR SNKE  N G++S++KP G ++ ++                P +P          
Sbjct: 61  EVNRRLSNKEAKNAGEASMRKPVGQDQRTLESAFPSRYPNRASSTRPSTPADGYQNRRGS 120

Query: 243 --RRSLVETRADVWERHNMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSI 302
             R + +ET AD WE+  ++KI+KRY                           EK+K +I
Sbjct: 121 STRHNTLETEADAWEKAQIKKIQKRY---------------------------EKVKSAI 180

Query: 303 HAWENKKKMHAKLHKEKKMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQIT 362
            AWEN+KKM AK+  EK+                 +ELE ++A  +Q+YQ    RIDQI 
Sbjct: 181 LAWENEKKMQAKIKMEKR----------------KSELEQRRASNMQHYQIKQTRIDQIA 234

Query: 363 EGARAQLEQKRIREEKKARETANRIRSTGRLPVTCFC 369
            GARAQ+E+KR  EE K RE   RIRS G++PV CFC
Sbjct: 241 GGARAQMEEKRRNEESKVREKVKRIRSKGKVPVKCFC 234

[Close]

BLAST of CmoCh13G011390 vs. TrEMBL
Match: A5BA99_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041733 PE=4 SV=1)

HSP 1 Score: 137.9 bits (346), Expect = 2.5e-29
Identity = 101/247 (40.89%), Postives = 137/247 (55.47%), Query Frame = 1


Query: 123 MNEDYDSRDLEFATAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDDITRRPS 182
           M++DYDS D EFATA A+AAFAI + EE +LQYQK     LET ++++K+RK+D T    
Sbjct: 1   MSKDYDSDDEEFATAVAAAAFAIYTLEEPNLQYQKRTRDGLETSMSRLKSRKEDTTGF-F 60

Query: 183 NKETTNPGQSSIKKPTGHEKDSM-TGIPLSPPRRSLVETRADVWERHNMEKIRKRYILIS 242
            KET  PG++SI++   +  +SM +  P S P ++                         
Sbjct: 61  GKETQTPGEASIRRQMTNNGNSMESAFPSSRPSKAS-----------------------P 120

Query: 243 ALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKEKKMVLPHLLDVFLT 302
           ALI  Q +T+  Q + F    + + I   I AWEN+KKM AKL  E+K            
Sbjct: 121 ALI--QFFTTAIQTMNF----RNDNISSRILAWENEKKMRAKLIMERK------------ 180

Query: 303 IIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEKKARETANRIRSTGR 362
                +ELE +KAL LQ+YQ  I RIDQI  GARAQL++KR  EE + +  A  IR TG+
Sbjct: 181 ----KSELEQRKALNLQHYQIKIERIDQIAGGARAQLQEKRRNEESEVKHKAEMIRKTGK 201

Query: 363 LPVTCFC 369
           +PV CFC
Sbjct: 241 VPVRCFC 201

[Close]

BLAST of CmoCh13G011390 vs. TrEMBL
Match: B9IE07_POPTR (Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03400g PE=4 SV=2)

HSP 1 Score: 133.3 bits (334), Expect = 6.2e-28
Identity = 104/310 (33.55%), Postives = 147/310 (47.42%), Query Frame = 1


Query: 80  SGRHNKDASIKPRDGIPQQKTRSSKEGTHKKESKKLRWYFANEMNEDYDSRDLEFATAAA 139
           SG   +++S      IP  +T S +   +K ++   R +F+  M++DYD +D EFATA A
Sbjct: 28  SGPEQQESSSVTERAIPPWRTESFRTVDNKGQNW-FRRHFSRPMSQDYDFQDGEFATAVA 87

Query: 140 SAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDD-------ITRRPSNKETTNPGQS 199
           +AAF I S EE +  Y++   G       K+KT K D       + R  S++E    G++
Sbjct: 88  AAAFVIHSHEEAEADYRRKLRGDFGKSKEKIKTTKQDSSAGSVRVKRHFSSREVIVAGET 147

Query: 200 SIKKPTGHEKDSM-TGIPLSPPRRS-------------LVETRADVWERHNMEKIRKRYI 259
           S +KPT  ++       P   P RS             +VET+AD WE+  + KI +RY 
Sbjct: 148 SARKPTEEDRRQQENAFPARKPSRSSSVRPMNRQPLSQVVETKADSWEKDQLRKINRRY- 207

Query: 260 LISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKEKKMVLPHLLDV 319
                                     EK+K  I  WE  KKM AKLH EKK         
Sbjct: 208 --------------------------EKMKSKILDWEKAKKMRAKLHGEKK--------- 267

Query: 320 FLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEKKARETANRIRS 369
                   +ELE ++A  +Q+Y + I RID I+  AR QLE+KR  EE + +E A  +RS
Sbjct: 268 -------KSELELRRARNMQHYHNKIARIDLISGRARGQLEEKRRNEELEVKEKAKHMRS 293

[Close]

BLAST of CmoCh13G011390 vs. TAIR10
Match: AT5G61280.1 (AT5G61280.1 Remorin family protein)

HSP 1 Score: 85.1 bits (209), Expect = 9.9e-17
Identity = 74/269 (27.51%), Postives = 115/269 (42.75%), Query Frame = 1


Query: 117 WYFANEMNEDYDSRDLEFATAAASAAFAIRSQEETDLQYQKN----------KSGSLETP 176
           WY   E N+ Y+ ++ E A + A AAF IRS EE D Q  K           K  +L  P
Sbjct: 45  WY---EKNDYYNEKESELAVSVAVAAFVIRSMEEADKQKSKRIREEIKRSRTKKSNLVIP 104

Query: 177 LTKVKTRKDDITRRPSNKETTNPGQSSIKK-----PTGHEKDSMTGIPLSPPRRSLVETR 236
            T+VK      T+          G+ S +K     P+ + +    G        +   ++
Sbjct: 105 NTQVKRLSKSYTQE------VKIGEESFRKKLLEYPSENRRPQEIGSSSGTSGLASASSK 164

Query: 237 ADVWERHNMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMH 296
           AD WE+  ++KIR                           L+YEK+K  I  WEN++K+ 
Sbjct: 165 ADSWEKSQIKKIR---------------------------LRYEKMKADIVGWENERKLA 224

Query: 297 AKLHKEKKMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQK 356
           A L  EK+                 +ELE +K +  Q+Y+  + RI  I +GA+ QLE+K
Sbjct: 225 ATLLMEKR----------------KSELEKRKGINNQHYKSKLARIQLIADGAKKQLEEK 261

Query: 357 RIREEKKARETANRIRSTGRLPVTCFCIQ 371
           R  +E +      ++  TG++P   FC +
Sbjct: 285 RRSKEAQVHGKVKKMSRTGKVPNNYFCFR 261

[Close]

BLAST of CmoCh13G011390 vs. TAIR10
Match: AT1G13920.1 (AT1G13920.1 Remorin family protein)

HSP 1 Score: 56.6 bits (135), Expect = 3.8e-08
Identity = 44/150 (29.33%), Postives = 65/150 (43.33%), Query Frame = 1


Query: 219 ETRADVWERHNMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKK 278
           ++ AD WE+  + KI+ RY                           EK+   I  WE KK
Sbjct: 237 DSTADAWEKAELSKIKARY---------------------------EKLNRKIDLWEAKK 296

Query: 279 KMHAKLHKEKKMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQL 338
           +  A+   +               I   +ELE ++   LQ ++++   I+QI  GARAQ 
Sbjct: 297 REKARRKLD---------------ISEQSELEQRRKRGLQRFREDTEYIEQIAAGARAQA 344

Query: 339 EQKRIREEKKARETANRIRSTGRLPVTCFC 369
           E+ R  +E K +E A  IRSTG+LP    C
Sbjct: 357 EKDRQSKEFKVKEKAGVIRSTGKLPGNACC 344

[Close]

BLAST of CmoCh13G011390 vs. TAIR10
Match: AT1G69325.1 (AT1G69325.1 Remorin family protein)

HSP 1 Score: 55.5 bits (132), Expect = 8.4e-08
Identity = 38/106 (35.85%), Postives = 54/106 (50.94%), Query Frame = 1


Query: 263 QYEKIKLSIHAWENKKKMHAK--LHKEKKMVLPHLLDVFLTIIHFNAELENKKALFLQNY 322
           +YEK+   I +WE+KK+  AK  LH+ ++ V                  E  K    Q +
Sbjct: 32  KYEKLSEKIVSWEDKKRKKAKRKLHRTERSV------------------EKTKLKATQRF 91

Query: 323 QDNIVRIDQITEGARAQLEQKRIREEKKARETANRIRSTGRLPVTC 367
           +D   RI+ I   ARA   + RI+EE K +E AN +R+TGR P TC
Sbjct: 92  RDENERIEIIVASARAHAYESRIKEELKVKEKANLMRTTGRKPSTC 119

[Close]

BLAST of CmoCh13G011390 vs. NCBI nr
Match: gi|659066508|ref|XP_008447698.1| (PREDICTED: remorin-like isoform X1 [Cucumis melo])

HSP 1 Score: 319.7 bits (818), Expect = 6.7e-84
Identity = 194/325 (59.69%), Postives = 225/325 (69.23%), Query Frame = 1


Query: 60  LSAKKAFPSLRNVPAPSFSDSGRHNKDASIKPRDGIPQQKTRSSKEGTHKKESKKLRWYF 119
           L+++++  S + V   SFSDSG+  +D +IKPRDGIPQ+KTRS KE   KKESKKL+WYF
Sbjct: 4   LTSQRSSKSFKRV---SFSDSGQQKRDPTIKPRDGIPQKKTRSFKED--KKESKKLQWYF 63

Query: 120 ANEMNEDYDSRDLEFATAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDD--- 179
           +N+MNEDYDS+D+EFATA ASAAFAIRS+EETDLQYQK K  S+E  +TKVK+RKDD   
Sbjct: 64  SNQMNEDYDSKDIEFATAVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAA 123

Query: 180 ----ITRRPSNKE--TTNPGQSSIKKPTGHEK-DSMTGIPL--SPPRRSLVETRADVWER 239
               ITR  S KE  TTNPGQSSIK+P   EK +S+TGIP   +PPRRSL+ +RADVWER
Sbjct: 124 FAPRITRPLSKKETQTTNPGQSSIKRPMEQEKRESVTGIPKPPAPPRRSLIPSRADVWER 183

Query: 240 HNMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKE 299
           + ME+I KRY+                           KIK SI AWEN+KKMHAKLH E
Sbjct: 184 NKMERISKRYL---------------------------KIKASILAWENEKKMHAKLHME 243

Query: 300 KKMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEK 359
           KK                  ELE KKALF Q Y +NI RIDQI  GARA LE+KR REEK
Sbjct: 244 KK----------------KDELERKKALFQQYYHENIARIDQIAGGARAHLEEKRKREEK 280

Query: 360 KARETANRIRSTGRLPVTCFCIQYH 373
           KARETANRIRSTGRLPVTCFC QYH
Sbjct: 304 KARETANRIRSTGRLPVTCFCFQYH 280

[Close]

BLAST of CmoCh13G011390 vs. NCBI nr
Match: gi|659066510|ref|XP_008447778.1| (PREDICTED: remorin-like isoform X2 [Cucumis melo])

HSP 1 Score: 318.9 bits (816), Expect = 1.2e-83
Identity = 191/309 (61.81%), Postives = 216/309 (69.90%), Query Frame = 1


Query: 76  SFSDSGRHNKDASIKPRDGIPQQKTRSSKEGTHKKESKKLRWYFANEMNEDYDSRDLEFA 135
           SFSDSG+  +D +IKPRDGIPQ+KTRS KE   KKESKKL+WYF+N+MNEDYDS+D+EFA
Sbjct: 11  SFSDSGQQKRDPTIKPRDGIPQKKTRSFKED--KKESKKLQWYFSNQMNEDYDSKDIEFA 70

Query: 136 TAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDD-------ITRRPSNKE--T 195
           TA ASAAFAIRS+EETDLQYQK K  S+E  +TKVK+RKDD       ITR  S KE  T
Sbjct: 71  TAVASAAFAIRSKEETDLQYQKKKRESMEASITKVKSRKDDTAAFAPRITRPLSKKETQT 130

Query: 196 TNPGQSSIKKPTGHEK-DSMTGIPL--SPPRRSLVETRADVWERHNMEKIRKRYILISAL 255
           TNPGQSSIK+P   EK +S+TGIP   +PPRRSL+ +RADVWER+ ME+I KRY+     
Sbjct: 131 TNPGQSSIKRPMEQEKRESVTGIPKPPAPPRRSLIPSRADVWERNKMERISKRYL----- 190

Query: 256 INTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKEKKMVLPHLLDVFLTII 315
                                 KIK SI AWEN+KKMHAKLH EKK              
Sbjct: 191 ----------------------KIKASILAWENEKKMHAKLHMEKK-------------- 250

Query: 316 HFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEKKARETANRIRSTGRLP 373
               ELE KKALF Q Y +NI RIDQI  GARA LE+KR REEKKARETANRIRSTGRLP
Sbjct: 251 --KDELERKKALFQQYYHENIARIDQIAGGARAHLEEKRKREEKKARETANRIRSTGRLP 274

[Close]

BLAST of CmoCh13G011390 vs. NCBI nr
Match: gi|778656988|ref|XP_011650064.1| (PREDICTED: remorin [Cucumis sativus])

HSP 1 Score: 308.5 bits (789), Expect = 1.6e-80
Identity = 188/307 (61.24%), Postives = 210/307 (68.40%), Query Frame = 1


Query: 76  SFSDSGRHNKDASIKPRDGIPQQKTRSSKEGTHKKESKKLRWYFANEMNEDYDSRDLEFA 135
           SFSDSG+  +D ++KP DGIPQ+KT   K+   KKESK L+WYF+N+ NEDYDS+D+EFA
Sbjct: 11  SFSDSGQQKRDPTVKPSDGIPQKKTSFKKD---KKESKTLQWYFSNQTNEDYDSKDIEFA 70

Query: 136 TAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKD-------DITRRPSNKET-- 195
           TA ASAA AIRSQEETDLQYQK K  S+E  +TKVK+RKD        +TRR S KET  
Sbjct: 71  TAVASAALAIRSQEETDLQYQKKKRESVEASITKVKSRKDGTAALAPSMTRRLSKKETQT 130

Query: 196 TNPGQSSIKKPTGHEK-DSMTGIPLSP--PRRSLVETRADVWERHNMEKIRKRYILISAL 255
           TNPGQSSIKKP G EK +S+TGIP  P  PRRSLV TRADVWER+ MEKI KRY+     
Sbjct: 131 TNPGQSSIKKPMGQEKRESVTGIPKPPAQPRRSLVPTRADVWERNKMEKISKRYL----- 190

Query: 256 INTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKEKKMVLPHLLDVFLTII 315
                                 KIK SI AWEN+KKMHAK H EKK              
Sbjct: 191 ----------------------KIKASILAWENEKKMHAKHHMEKK-------------- 250

Query: 316 HFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEKKARETANRIRSTGRLP 371
              AELE KKALF Q YQ+NI RIDQI  GARAQLE+KR REEKKARETANRIRSTGRLP
Sbjct: 251 --KAELERKKALFQQYYQENIARIDQIAGGARAQLEEKRKREEKKARETANRIRSTGRLP 271

[Close]

BLAST of CmoCh13G011390 vs. NCBI nr
Match: gi|731425559|ref|XP_010663297.1| (PREDICTED: uncharacterized protein At3g61260 isoform X1 [Vitis vinifera])

HSP 1 Score: 153.7 bits (387), Expect = 6.4e-34
Identity = 118/320 (36.88%), Postives = 161/320 (50.31%), Query Frame = 1


Query: 76  SFSDSGRHNKDASIKPRDGIPQQKTRSSKEGTHKKESKKLRWY---FANEMNEDYDSRDL 135
           SFS SG+H+K+AS   R+                +  K   W+   F+ +M++DYDS D 
Sbjct: 11  SFSGSGQHSKEASHSIRE--------------RPRGDKVQNWFWRQFSPQMSKDYDSDDE 70

Query: 136 EFATAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDDITRRPSNKETTNPGQS 195
           EFATA A+AAFAI + EE +LQYQK     LET ++++K+RK+D T     KET  PG++
Sbjct: 71  EFATAVAAAAFAIYTLEEPNLQYQKRTRDGLETSMSRLKSRKEDTTGF-FGKETQTPGEA 130

Query: 196 SIKKPTGHEKDSM-TGIPLSPPRRS-----------------------LVETRADVWERH 255
           SI++   +  +SM    P S P ++                        VET+AD WE+ 
Sbjct: 131 SIRRQMTNNGNSMENAFPSSRPSKASPVRSVSAAPRDQRQQGYSTSNRSVETKADAWEKA 190

Query: 256 NMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKKKMHAKLHKEK 315
            + KI+KR                            + I   I AWEN+KKM AKL  E+
Sbjct: 191 QITKIKKR---------------------------NDNISSRILAWENEKKMRAKLIMER 250

Query: 316 KMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQLEQKRIREEKK 369
           K                 +ELE +KAL LQ+YQ  I RIDQI  GARAQL++KR  EE +
Sbjct: 251 K----------------KSELEQRKALNLQHYQIKIERIDQIAGGARAQLQEKRRNEESE 272

[Close]

BLAST of CmoCh13G011390 vs. NCBI nr
Match: gi|731425561|ref|XP_010663298.1| (PREDICTED: uncharacterized protein At3g61260 isoform X2 [Vitis vinifera])

HSP 1 Score: 145.6 bits (366), Expect = 1.7e-31
Identity = 105/270 (38.89%), Postives = 140/270 (51.85%), Query Frame = 1


Query: 123 MNEDYDSRDLEFATAAASAAFAIRSQEETDLQYQKNKSGSLETPLTKVKTRKDDITRRPS 182
           M++DYDS D EFATA A+AAFAI + EE +LQYQK     LET ++++K+RK+D T    
Sbjct: 1   MSKDYDSDDEEFATAVAAAAFAIYTLEEPNLQYQKRTRDGLETSMSRLKSRKEDTTGF-F 60

Query: 183 NKETTNPGQSSIKKPTGHEKDSM-TGIPLSPPRRS-----------------------LV 242
            KET  PG++SI++   +  +SM    P S P ++                        V
Sbjct: 61  GKETQTPGEASIRRQMTNNGNSMENAFPSSRPSKASPVRSVSAAPRDQRQQGYSTSNRSV 120

Query: 243 ETRADVWERHNMEKIRKRYILISALINTQEWTSQFQVLKFIEHLQYEKIKLSIHAWENKK 302
           ET+AD WE+  + KI+KR                            + I   I AWEN+K
Sbjct: 121 ETKADAWEKAQITKIKKR---------------------------NDNISSRILAWENEK 180

Query: 303 KMHAKLHKEKKMVLPHLLDVFLTIIHFNAELENKKALFLQNYQDNIVRIDQITEGARAQL 362
           KM AKL  E+K                 +ELE +KAL LQ+YQ  I RIDQI  GARAQL
Sbjct: 181 KMRAKLIMERK----------------KSELEQRKALNLQHYQIKIERIDQIAGGARAQL 226

Query: 363 EQKRIREEKKARETANRIRSTGRLPVTCFC 369
           ++KR  EE + +  A  IR TG++PV CFC
Sbjct: 241 QEKRRNEESEVKHKAEMIRKTGKVPVRCFC 226

The following BLAST results are available for this feature:

BLAST of CmoCh13G011390 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G011390 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LTG1_CUCSA	1.1e-80	61.24	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G038990 PE=4 SV=1	[more]
D7SI44_VITVI	1.2e-31	38.89	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g06920 PE=4 SV=...	[more]
M5WWQ0_PRUPE	2.1e-31	36.46	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa016826mg PE=4 SV=1	[more]
A5BA99_VITVI	2.5e-29	40.89	Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_041733 PE=4 SV=1	[more]
B9IE07_POPTR	6.2e-28	33.55	Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s03400g PE=4 SV=2	[more]

BLAST of CmoCh13G011390 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G61280.1	9.9e-17	27.51	Remorin family protein	[more]
AT1G13920.1	3.8e-08	29.33	Remorin family protein	[more]
AT1G69325.1	8.4e-08	35.85	Remorin family protein	[more]

BLAST of CmoCh13G011390 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659066508\|ref\|XP_008447698.1\|	6.7e-84	59.69	PREDICTED: remorin-like isoform X1 [Cucumis melo]	[more]
gi\|659066510\|ref\|XP_008447778.1\|	1.2e-83	61.81	PREDICTED: remorin-like isoform X2 [Cucumis melo]	[more]
gi\|778656988\|ref\|XP_011650064.1\|	1.6e-80	61.24	PREDICTED: remorin [Cucumis sativus]	[more]
gi\|731425559\|ref\|XP_010663297.1\|	6.4e-34	36.88	PREDICTED: uncharacterized protein At3g61260 isoform X1 [Vitis vinifera]	[more]
gi\|731425561\|ref\|XP_010663298.1\|	1.7e-31	38.89	PREDICTED: uncharacterized protein At3g61260 isoform X2 [Vitis vinifera]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR005516	Remorin_C

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G011390.1	CmoCh13G011390.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR005516	Remorin, C-terminal	PFAM	PF03763	Remorin_C	coord: 218..364 score: 7.3
None	No IPR available	unknown	Coil	Coil	coord: 335..355 scor
None	No IPR available	PANTHER	PTHR31471	FAMILY NOT NAMED	coord: 263..290 score: 2.4E-33coord: 307..370 score: 2.4E-33coord: 218..235 score: 2.4

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G011390	CmaCh13G010880	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G011390	CmaCh01G008160	Cucurbita maxima (Rimu)	cmacmoB459
CmoCh13G011390	Cla018582	Watermelon (97103) v1	cmowmB194
CmoCh13G011390	Csa1G038990	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G011390	MELO3C002011	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G011390	ClCG04G011980	Watermelon (Charleston Gray)	cmowcgB191
CmoCh13G011390	CSPI01G05930	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G011390	Lsi02G001010	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G011390	Cp4.1LG02g10470	Cucurbita pepo (Zucchini)	cmocpeB208
CmoCh13G011390	MELO3C002011.2	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G011390	CsaV3_1G005800	Cucumber (Chinese Long) v3	cmocucB0234
CmoCh13G011390	Cla97C04G078890	Watermelon (97103) v2	cmowmbB216
CmoCh13G011390	Bhi08G000942	Wax gourd	cmowgoB0247
CmoCh13G011390	CsGy1G005670	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G011390	Carg04746	Silver-seed gourd	carcmoB0526
CmoCh13G011390	Carg21699	Silver-seed gourd	carcmoB0068

The following gene(s) are paralogous to this gene:


Gene	Paralogue	Organism	Block
CmoCh13G011390	CmoCh01G008530	Cucurbita moschata (Rifu)	cmocmoB175

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G011390	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G011390	Cucurbita pepo (Zucchini)	cmocpeB212
CmoCh13G011390	Cucumber (Gy14) v2	cgybcmoB075
CmoCh13G011390	Melon (DHL92) v3.6.1	cmomedB213
CmoCh13G011390	Cucumber (Chinese Long) v3	cmocucB0242
CmoCh13G011390	Cucumber (Chinese Long) v3	cmocucB0252
CmoCh13G011390	Watermelon (97103) v2	cmowmbB222
CmoCh13G011390	Cucurbita moschata (Rifu)	cmocmoB089
CmoCh13G011390	Cucurbita moschata (Rifu)	cmocmoB188
CmoCh13G011390	Cucumber (Gy14) v1	cgycmoB0262
CmoCh13G011390	Cucumber (Gy14) v1	cgycmoB0585
CmoCh13G011390	Wild cucumber (PI 183967)	cmocpiB212
CmoCh13G011390	Cucumber (Chinese Long) v2	cmocuB210
CmoCh13G011390	Melon (DHL92) v3.5.1	cmomeB191
CmoCh13G011390	Watermelon (Charleston Gray)	cmowcgB195
CmoCh13G011390	Watermelon (97103) v1	cmowmB202