CmoCh13G009810 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G009810
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pentatricopeptide repeat-containing protein, putative
Location	Cmo_Chr13 : 8398462 .. 8400108 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTGTTCATCAAGGTAATAAAAGCAATACAGCTTACATCTTTTTGTGGTGTTCTTTGTTCTGTTTGGTTTGAAAATTAGAAGGTGGGTTCATTGTTTTTGGAGCTTAATCCTTATCCTTTTCGACCTTGATGATAACGAAAAGTGGGATATGGGTATGCCGTATAGGTTCAAAAGTTTTGATCTTTATCCTTTTTATGTTGATTGAATTTGGTCTATTTTAACATGAATTCGATGTGCTCTGCATTAAGTGGAGTCATTCCGATAAGGATGACCTGTACAAATGGTGGATTTGGGATCTGGGTGGTTACAGGATCTGGGTCGTTACAAGTAGTATCAGATATTGAGGAATTGTCCATACGTAAAATCATCTGGGTCGTTACAGATAGTATCAGAGATCTGGGTTGTTACAGATCTGGGTTGTTACAAAGACACATCCTCACAAATAGTATCAGATCTGGGAGTATCAGAGATCTGGGTATCAGAGATCTGGGTTGTTACAAAGACACATCCTCTGAGTTGTTACAAATAGTATCAGAGCCAGACAACATGTGTCAGCGAAGACAACATGCCAGTACACATCCTCTGGGTTGTTACAAATAGTATCAGAACCAGACAACATGTGTCAGCCTTCTCGCTGACCTCCACGGTGTGCCAGTAAGGATGCTGGGCCTCAAAGGGGTTGTTACAAATAGTATCAGAGCCAGACAACATGTGTCAGCCTTCTCGCTGACCTCCGCGGTGTGCCAGTAAGGATGCTGGGCCTCAAAGAAGGTAGATTTGAAGACGTCCCACAATTGGAGGAAGGAAAGTGCAACGGACTCCGAAGGGGTGGATTGTGATGTTCCACATTGGTTGGGGAAAAGAACAATTGTAACCTCCCGGAGAGGTTGAGGAGAACAAACCACAAAAGTGTAGAAATCTTTACCTAGCAGTCGAGGGGAAGCTCGAAAAAAAAAAGTCCAAGAGAACAATATCTGCTAGCGGTAGATTTGGGTCGTTGGTCGTTACAATAATCACACGTCAACATCTTAATCTAATATATGTGTCATGCTTTTCAATCGATTTTAATTGATTCCGAACTCTTGATCATAATCTAATAGACATGTAATGCTTAGAAGTTGACTCCCAACTTCAAATGTCTTTGGTAAATTCTATGTTTTATAATTAATTCAAAATATAAGAAAAATAGTTTCTTTAGCAAATTTGAAGCAAAAATGGATGGAAATTATAATCATTTTAAAGTTAACTTGTTATAAATTTCGTGGGGGTAGTAATAAAAGTTTCAATTTTCTTTTTTTTTTTTTCCCTATATAAAAGGTATACAATTGGGCTGAAGGTTGTTTGTTTGGAATCAGATCTAGCTATGAAGAGCCTTGACGCAATACGAAGGGGAACGACATACTTCTGTTTATTGTTATACGATTGCTTGCAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTTTGCGCAAATCTTGCTTCGATCGGTGA

mRNA sequence

ATGTTGTTCATCAAGGTATACAATTGGGCTGAAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTTTGCGCAAATCTTGCTTCGATCGGTGA

Coding sequence (CDS)

ATGTTGTTCATCAAGGTATACAATTGGGCTGAAGGTTCTTTCGCAATGCAGATTCATAGGTTCTCCCCATCTTCCAGCTTCATTCTTTATCTATGGAACTTGATGATTAGAAGCTCTGTCAATGGCGGGTTCTTCGCCCAAGCTCTTGAAGCCTACTCGTTTATGTGCCACTTCGGAATTCATGGTAACAATTTCACATTTTCTCTCCTCCTCAAGCCTTTGCGCAAATCTTGCTTCGATCGGTGA

Homology

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BLAST of CmoCh13G009810 vs. TrEMBL
Match: A0A0A0LT91_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043310 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 1.2e-16
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ+LE YSFM H GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLL 60

[Close]

BLAST of CmoCh13G009810 vs. TrEMBL
Match: V7C2U8_PHAVU (Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G135700g PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 9.2e-09
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIR S N GFF Q L  YS M H G+HGNN T+ LLLK
Sbjct: 15 LYLWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLK 58

[Close]

BLAST of CmoCh13G009810 vs. TrEMBL
Match: A0A0S3TBU1_PHAAN (Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G208900 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-08
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIR S N GFF Q L  Y  M H G+HGNN T+ LLLK
Sbjct: 15 LYLWNLMIRDSTNNGFFIQTLNIYFSMAHSGVHGNNLTYPLLLK 58

[Close]

BLAST of CmoCh13G009810 vs. TrEMBL
Match: A0A0L9VHU5_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g052300 PE=4 SV=1)

HSP 1 Score: 64.7 bits (156), Expect = 5.9e-08
Identity = 29/44 (65.91%), Postives = 31/44 (70.45%), Query Frame = 1


Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIR S N GFF Q L  Y  M H G+HGNN T+ LLLK
Sbjct: 15 LYLWNLMIRDSTNNGFFIQTLNIYFSMAHSGVHGNNLTYPLLLK 58

[Close]

BLAST of CmoCh13G009810 vs. TrEMBL
Match: B9SI50_RICCO (Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0612730 PE=4 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.3e-07
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIRSS   G F QAL+ YS M   G+HGN FTF LLLK
Sbjct: 15 LYLWNLMIRSSTKAGLFFQALDIYSSMLQSGVHGNGFTFPLLLK 58

[Close]

BLAST of CmoCh13G009810 vs. NCBI nr
Match: gi|449439735|ref|XP_004137641.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.7e-16
Identity = 48/61 (78.69%), Postives = 50/61 (81.97%), Query Frame = 1


Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ+LE YSFM H GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQSLETYSFMRHSGIHGNNFTFPLLL 60

[Close]

BLAST of CmoCh13G009810 vs. NCBI nr
Match: gi|659068757|ref|XP_008446053.1| (PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like [Cucumis melo])

HSP 1 Score: 90.1 bits (222), Expect = 1.9e-15
Identity = 47/61 (77.05%), Postives = 48/61 (78.69%), Query Frame = 1


Query: 16 MQIHRFSPSSSFI----LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLL 73
          MQIHRFS SS+ I    LYLWNL IRSSVNGGFFAQ LE YSFM   GIHGNNFTF LLL
Sbjct: 1  MQIHRFSSSSTLITKKPLYLWNLTIRSSVNGGFFAQTLETYSFMRQSGIHGNNFTFPLLL 60

[Close]

BLAST of CmoCh13G009810 vs. NCBI nr
Match: gi|593704251|ref|XP_007152503.1| (hypothetical protein PHAVU_004G135700g [Phaseolus vulgaris])

HSP 1 Score: 67.4 bits (163), Expect = 1.3e-08
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIR S N GFF Q L  YS M H G+HGNN T+ LLLK
Sbjct: 15 LYLWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLK 58

[Close]

BLAST of CmoCh13G009810 vs. NCBI nr
Match: gi|950927789|ref|XP_014495233.1| (PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Vigna radiata var. radiata])

HSP 1 Score: 67.0 bits (162), Expect = 1.7e-08
Identity = 30/44 (68.18%), Postives = 32/44 (72.73%), Query Frame = 1


Query: 29 LYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          LYLWNLMIR S N GFF Q L  YS M H G+HGNN T+ LLLK
Sbjct: 15 LYLWNLMIRDSTNNGFFIQTLNIYSSMAHSGVHGNNLTYPLLLK 58

[Close]

BLAST of CmoCh13G009810 vs. NCBI nr
Match: gi|356561794|ref|XP_003549163.1| (PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-like [Glycine max])

HSP 1 Score: 66.6 bits (161), Expect = 2.2e-08
Identity = 31/50 (62.00%), Postives = 33/50 (66.00%), Query Frame = 1


Query: 23 PSSSFILYLWNLMIRSSVNGGFFAQALEAYSFMCHFGIHGNNFTFSLLLK 73
          PS    LY WNLMIR S N GFF Q L  YS M H G+HGNN T+ LLLK
Sbjct: 5  PSFRRSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLK 54

The following BLAST results are available for this feature:

BLAST of CmoCh13G009810 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G009810 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT91_CUCSA	1.2e-16	78.69	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G043310 PE=4 SV=1	[more]
V7C2U8_PHAVU	9.2e-09	68.18	Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_004G135700g PE=4 SV=1	[more]
A0A0S3TBU1_PHAAN	5.9e-08	65.91	Uncharacterized protein OS=Vigna angularis var. angularis GN=Vigan.11G208900 PE=...	[more]
A0A0L9VHU5_PHAAN	5.9e-08	65.91	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan10g052300 PE=4 SV=1	[more]
B9SI50_RICCO	1.3e-07	68.18	Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCO...	[more]

BLAST of CmoCh13G009810 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh13G009810 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449439735\|ref\|XP_004137641.1\|	1.7e-16	78.69	PREDICTED: pentatricopeptide repeat-containing protein At3g12770 [Cucumis sativu...	[more]
gi\|659068757\|ref\|XP_008446053.1\|	1.9e-15	77.05	PREDICTED: pentatricopeptide repeat-containing protein At2g29760, chloroplastic-...	[more]
gi\|593704251\|ref\|XP_007152503.1\|	1.3e-08	68.18	hypothetical protein PHAVU_004G135700g [Phaseolus vulgaris]	[more]
gi\|950927789\|ref\|XP_014495233.1\|	1.7e-08	68.18	PREDICTED: pentatricopeptide repeat-containing protein At3g12770-like [Vigna rad...	[more]
gi\|356561794\|ref\|XP_003549163.1\|	2.2e-08	62.00	PREDICTED: pentatricopeptide repeat-containing protein At4g19191, mitochondrial-...	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G009810.1	CmoCh13G009810.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR24015	FAMILY NOT NAMED	coord: 29..72 score: 6.8
None	No IPR available	PANTHER	PTHR24015:SF498	SUBFAMILY NOT NAMED	coord: 29..72 score: 6.8

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G009810	CmaCh13G009490	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G009810	Lsi02G002880	Bottle gourd (USVL1VR-Ls)	cmolsiB198
CmoCh13G009810	MELO3C002185.2	Melon (DHL92) v3.6.1	cmomedB202
CmoCh13G009810	Cla97C01G013670	Watermelon (97103) v2	cmowmbB191

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G009810	Wax gourd	cmowgoB0258
CmoCh13G009810	Cucurbita moschata (Rifu)	cmocmoB171
CmoCh13G009810	Cucumber (Gy14) v1	cgycmoB0314
CmoCh13G009810	Cucurbita maxima (Rimu)	cmacmoB399
CmoCh13G009810	Wild cucumber (PI 183967)	cmocpiB204
CmoCh13G009810	Cucumber (Chinese Long) v2	cmocuB202
CmoCh13G009810	Melon (DHL92) v3.5.1	cmomeB180
CmoCh13G009810	Watermelon (Charleston Gray)	cmowcgB170
CmoCh13G009810	Watermelon (97103) v1	cmowmB187
CmoCh13G009810	Cucurbita pepo (Zucchini)	cmocpeB183
CmoCh13G009810	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G009810	Cucumber (Gy14) v2	cgybcmoB067
CmoCh13G009810	Silver-seed gourd	carcmoB0671
CmoCh13G009810	Silver-seed gourd	carcmoB1349
CmoCh13G009810	Cucumber (Chinese Long) v3	cmocucB0234