CmoCh13G009420 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G009420
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionUnknown protein
LocationCmo_Chr13 : 8252768 .. 8254267 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCAGGAAAAGGAAGAGCTCTGACCCGAAAGCTCTCTCATCTTAACGAGTTCAAGATCATGAGAGTACTCAAAGCAGACAACGAAATCTCCAAGCATGAAGGAAAAGTATCTTTAGCTGAGACTTCTCACAATTTAGGGAAACCTCAAAACCTTGTCGACCAGAATAACAGTGATTCTTAACTTCCCATATTGGTAAATTACTCAGTAACTATAGTCAGCATTGAAGCATAGAGAGTTTGATTTTTAGGTGGGTGTTTTCTTTCCTTGCAGTTTGTTTTATTTCTAGGATGTACATAGTGTTGTATGACGCGCTGAATATAGATATAAAGCTCCTTGAAGCTCAGCAGCTGCTAACTTCTTCCATAGCAGTAAGACACCTCTTTCCCATTTCTTCTTCAGTTGCTTTCTCTATTGCTTTAGAAGCTTCACCCCAACAAACTCAGGGTACAATGACGTTTGATTTATGAAATTGCAGATGCAGAGCTAAAAACCATATTCGGCTGCCAGCGATGGGTGTAGAAGGCTTTCCTTTTTCTTTTCTATTACTTTACTATTCATCAGCAGAGTGGAAATGGTGTTCAAGAAAGTGCTTTTGGATTTACACATCAAAAGCCACAGAACAAGGGAAAGAAAAAAGGCCAATATTCCTTCTTTTTGAGGGCATAGTTGGACTAATGATAGAACCTCAAGGGAAAATCACTCAAGGGAAAATCAGAAAAGGCAAGGCGTTCGGGCTTCCATCCCATTTACAACGAGACAAACGTTAGCGTTGTATGATGCAAGAAGAGTTCTTTAAAGTCATAATCATCCCCTCCCCCTTAAATGTCTTTTCGAGTTTACTAAAATGACAGCAATATGCAAGGAATTTTGATTGGTTTCATCCCATATACTACTTCAAAACTTGGAGAGGGAAGACGCCAGTCCTTTTTAAACGCAAAGAGATATCTTTTTCTTTGTCATTTATTGATCTAATCTAGCAAGAAGGAATTCAACTAGTCATTTTTTGTTCTTGGCCATCACATTTTGAACCAAATATTGAGTAGTAGGGACACACAACCGACCCCCAAGGGTCCCAATGCAAACCACCTAACGCATAACTTTTCCAACTTCCAGAAGGAGCCAAAATCAATCGTTCAATCTTCTAAATAAGGAGGCTATGAATGAGAACGCACATGTATTGGTCAAAGAGGAATGTACATCCAATATCAAACATAAAGGCTGTGGGCCTACCTACCATCCTTTTCAGCTAGGTAATTACTCATACGACTGGCTCAAGAAAGAGACTTTATAACATAGAAAGTTAGAAGAACGAAAAAAGAGGGTGGGGTGGGGTAAAGAGCTCTCCCCTGATCCTGTCCAATTGTACAAAATCAGGCGGTGAAGTGAGTGAATGCTCTACAATAACCCCATCTCAGCTCAAGAAACAAAAATGCATAATTTAGTCTTAATCTTGTAGTTTATCCTTCGCTAATGATGAATCACAGACCATTTGAGTGA

mRNA sequence

ATGGCAGGAAAAGGAAGAGCTCTGACCCGAAAGCTCTCTCATCTTAACGAGTTCAAGATCATGAGAGTACTCAAAGCAGACAACGAAATCTCCAAGCATGAAGGAAAAGTATCTTTAGCTGAGACTTCTCACAATTTAGGGAAACCTCAAAACCTTGTCGACCAGAATAACATTTGTTTTATTTCTAGGATGTACATAGTGTTGTATGACGCGCTGAATATAGATATAAAGCTCCTTGAAGCTCAGCAGCTGCTAACTTCTTCCATAGCAGTAAGACACCTCTTTCCCATTTCTTCTTCAGTTGCTTTCTCTATTGCTTTAGAAGCTTCACCCCAACAAACTCAGGTTTATCCTTCGCTAATGATGAATCACAGACCATTTGAGTGA

Coding sequence (CDS)

ATGGCAGGAAAAGGAAGAGCTCTGACCCGAAAGCTCTCTCATCTTAACGAGTTCAAGATCATGAGAGTACTCAAAGCAGACAACGAAATCTCCAAGCATGAAGGAAAAGTATCTTTAGCTGAGACTTCTCACAATTTAGGGAAACCTCAAAACCTTGTCGACCAGAATAACATTTGTTTTATTTCTAGGATGTACATAGTGTTGTATGACGCGCTGAATATAGATATAAAGCTCCTTGAAGCTCAGCAGCTGCTAACTTCTTCCATAGCAGTAAGACACCTCTTTCCCATTTCTTCTTCAGTTGCTTTCTCTATTGCTTTAGAAGCTTCACCCCAACAAACTCAGGTTTATCCTTCGCTAATGATGAATCACAGACCATTTGAGTGA
Homology
[Close]
BLAST of CmoCh13G009420 vs. TrEMBL
Match: A0A0A0LU10_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045700 PE=4 SV=1)

HSP 1 Score: 67.8 bits (164), Expect = 1.1e-08
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 3   GKGR--ALTRKLSHLNEFKIMRVLKADNEISKHEGKVSLAETSHNLGKPQNLVDQNN 58
           GKGR  ALTR+LSHLNE  I+R L+AD + SKHEGKV LA+ SH LGK QN +D+N+
Sbjct: 570 GKGRTSALTRELSHLNE--IVRELEADGKFSKHEGKVMLADISHKLGKVQNSLDENS 624

[Close]
BLAST of CmoCh13G009420 vs. NCBI nr
Match: gi|778657665|ref|XP_011651300.1| (PREDICTED: probable myosin-binding protein 5 isoform X1 [Cucumis sativus])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 3   GKGR--ALTRKLSHLNEFKIMRVLKADNEISKHEGKVSLAETSHNLGKPQNLVDQNN 58
           GKGR  ALTR+LSHLNE  I+R L+AD + SKHEGKV LA+ SH LGK QN +D+N+
Sbjct: 570 GKGRTSALTRELSHLNE--IVRELEADGKFSKHEGKVMLADISHKLGKVQNSLDENS 624

[Close]
BLAST of CmoCh13G009420 vs. NCBI nr
Match: gi|659067126|ref|XP_008437788.1| (PREDICTED: uncharacterized protein LOC103483117 isoform X1 [Cucumis melo])

HSP 1 Score: 67.8 bits (164), Expect = 1.6e-08
Identity = 37/57 (64.91%), Postives = 45/57 (78.95%), Query Frame = 1 

Query: 3   GKGR--ALTRKLSHLNEFKIMRVLKADNEISKHEGKVSLAETSHNLGKPQNLVDQNN 58
           GKGR  ALTR+LSHLNE  I+R L+AD + SKHEGKV LA+ SH LGK Q L+D+N+
Sbjct: 575 GKGRTSALTRELSHLNE--IVRALEADGKFSKHEGKVILADISHKLGKLQTLLDENS 629

The following BLAST results are available for this feature:
BLAST of CmoCh13G009420 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G009420 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0LU10_CUCSA1.1e-0864.91Uncharacterized protein OS=Cucumis sativus GN=Csa_1G045700 PE=4 SV=1[more]
BLAST of CmoCh13G009420 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G009420 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|778657665|ref|XP_011651300.1|1.6e-0864.91PREDICTED: probable myosin-binding protein 5 isoform X1 [Cucumis sativus][more]
gi|659067126|ref|XP_008437788.1|1.6e-0864.91PREDICTED: uncharacterized protein LOC103483117 isoform X1 [Cucumis melo][more]
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003674 molecular_function
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G009420.1CmoCh13G009420.1mRNA


Synteny
The following gene(s) are orthologous to this gene:
GeneOrthologueOrganismBlock
CmoCh13G009420MELO3C002225.2Melon (DHL92) v3.6.1cmomedB202
CmoCh13G009420Cla97C01G013240Watermelon (97103) v2cmowmbB191
The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G009420Wax gourdcmowgoB0231
CmoCh13G009420Wax gourdcmowgoB0258
CmoCh13G009420Wax gourdcmowgoB0276
CmoCh13G009420Cucurbita moschata (Rifu)cmocmoB051
CmoCh13G009420Cucurbita moschata (Rifu)cmocmoB087
CmoCh13G009420Cucurbita moschata (Rifu)cmocmoB171
CmoCh13G009420Cucurbita moschata (Rifu)cmocmoB185
CmoCh13G009420Cucumber (Gy14) v1cgycmoB0203
CmoCh13G009420Cucumber (Gy14) v1cgycmoB0437
CmoCh13G009420Cucumber (Gy14) v1cgycmoB0582
CmoCh13G009420Cucurbita maxima (Rimu)cmacmoB399
CmoCh13G009420Cucurbita maxima (Rimu)cmacmoB081
CmoCh13G009420Cucurbita maxima (Rimu)cmacmoB128
CmoCh13G009420Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G009420Wild cucumber (PI 183967)cmocpiB197
CmoCh13G009420Wild cucumber (PI 183967)cmocpiB204
CmoCh13G009420Wild cucumber (PI 183967)cmocpiB216
CmoCh13G009420Cucumber (Chinese Long) v2cmocuB194
CmoCh13G009420Cucumber (Chinese Long) v2cmocuB202
CmoCh13G009420Melon (DHL92) v3.5.1cmomeB180
CmoCh13G009420Melon (DHL92) v3.5.1cmomeB193
CmoCh13G009420Watermelon (Charleston Gray)cmowcgB170
CmoCh13G009420Watermelon (Charleston Gray)cmowcgB197
CmoCh13G009420Watermelon (97103) v1cmowmB172
CmoCh13G009420Watermelon (97103) v1cmowmB187
CmoCh13G009420Watermelon (97103) v1cmowmB204
CmoCh13G009420Cucurbita pepo (Zucchini)cmocpeB183
CmoCh13G009420Cucurbita pepo (Zucchini)cmocpeB197
CmoCh13G009420Cucurbita pepo (Zucchini)cmocpeB201
CmoCh13G009420Cucurbita pepo (Zucchini)cmocpeB214
CmoCh13G009420Bottle gourd (USVL1VR-Ls)cmolsiB198
CmoCh13G009420Bottle gourd (USVL1VR-Ls)cmolsiB208
CmoCh13G009420Cucumber (Gy14) v2cgybcmoB062
CmoCh13G009420Cucumber (Gy14) v2cgybcmoB067
CmoCh13G009420Cucumber (Gy14) v2cgybcmoB278
CmoCh13G009420Melon (DHL92) v3.6.1cmomedB215
CmoCh13G009420Silver-seed gourdcarcmoB0496
CmoCh13G009420Silver-seed gourdcarcmoB0671
CmoCh13G009420Silver-seed gourdcarcmoB0839
CmoCh13G009420Silver-seed gourdcarcmoB1349
CmoCh13G009420Cucumber (Chinese Long) v3cmocucB0227
CmoCh13G009420Cucumber (Chinese Long) v3cmocucB0234
CmoCh13G009420Cucumber (Chinese Long) v3cmocucB0250
CmoCh13G009420Watermelon (97103) v2cmowmbB201
CmoCh13G009420Watermelon (97103) v2cmowmbB224
CmoCh13G009420Watermelon (97103) v2cmowmbB226