CmoCh13G004990 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G004990
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Mitochondrial transcription termination factor-related family protein
Location	Cmo_Chr13 : 5940114 .. 5941475 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCGGGAAGAATCTTAATCAGAGCTTCTGCATTTCGCCGGTTGATTTCAACCTCAATTCTTACCTCCTCGTTTCAGAGAATCCACCATGTTGTTTCAGCTAAAGCAGCTTCCACCTTCTCCAATCATCTCAAAATTTCCCCGAATCAACCTGATCTCTTACACAAGATTGGATTCACGCAATCCCAAATCAGCAATTTCCTTTCGAAGAATCATCTCTTCTTGACGAATTCCAATTTGCTGGACATTGAAGCTTCTGTTGCGGTTCTTTTATCCTTCAAAATTCTCCCGAGGGATCTCGTTTCCATGGCGATCGACTGTCCTGCGGTTCTGGACTTGGAGTTTCTGAGGAAATGGGAGGCAAGTTTGTCGTTAATTGAATTACGCAATGTTTCTGTATTGATGATTCGGAGTATGCTGGTGTTATCTAAACGGTTTCAGCTGGATTCGTGTATTTTTATTACAACTGTAGATTTACTGAAACGTTTAGGGCTTAGTGATGCTACTGTGACTAGGGTTTTAGAGGATTACCCTGAAATAGTGTTCTCGAACGAGGAAGAAATCTTGCGAACGATTGAATTTCTGATGGGAATTGGAATTCGAAGGGGTGAAATTGATCGGATCATTTGTTTGATTCCCAAAGTTCTAGGATTTAGGGTTGATGGAAGATTGAAGAGTTTGATTGGTGAGTTCAACGAGTTGGGGTTTGATCAAAACGTGATTGTAAGAGAAATTGTCAGGGAACCGAGAATTTTAGCCACCGAATTAGGAGAAATTTCAAGGTGCCTCGAGTTGCTTAGCAATCTGAAATGCAGGAACTCAATCAAGGAGAAAATCTTTAGAGACGGTGCTTTAAGAGCTGCATTTGAAGTGAAACAGAGAGTTGATTGTTTATGTAAACATGGGCTGATTCGTACAGGAGCATTTAAATTGCTGTGGAAAGAACCGAGGTTGATCACTTACGAATTAGAGAACATTGAAAAGAAAATTGACTTCTTGACCCATAAGATGAAATTTGGTGTTGACTGTTTGATGGATGTTCCAGAATATCTGGGAATCAATTTCGAAAAACAGATTGTTCCTCGCTACCATGTGATTGAATATTTGGAATCAAAAGGATGGCTTGGTTCTCAGGTTGGATTGAGGGAAATTATCAAGCCTAGCAGGCTCAGGTTCTACAACCTTTTTGTTAAGCCTTATCCAGAATGTGGGAAGATGTTTGGGAAATTTGTAGGAGATAACAAAATGAAGAGCCCAAGGCGGCATCCTATTGGACTATGGAAGGTCTTCAAACCACAAAAACATCCAGAATCGAAAGAGGATACTAAAAACATGAAGTCGTTCATGGAATCTTTTATTTAG

mRNA sequence

ATGGCGGGAAGAATCTTAATCAGAGCTTCTGCATTTCGCCGGTTGATTTCAACCTCAATTCTTACCTCCTCGTTTCAGAGAATCCACCATGTTGTTTCAGCTAAAGCAGCTTCCACCTTCTCCAATCATCTCAAAATTTCCCCGAATCAACCTGATCTCTTACACAAGATTGGATTCACGCAATCCCAAATCAGCAATTTCCTTTCGAAGAATCATCTCTTCTTGACGAATTCCAATTTGCTGGACATTGAAGCTTCTGTTGCGGTTCTTTTATCCTTCAAAATTCTCCCGAGGGATCTCGTTTCCATGGCGATCGACTGTCCTGCGGTTCTGGACTTGGAGTTTCTGAGGAAATGGGAGGCAAGTTTGTCGTTAATTGAATTACGCAATGTTTCTGTATTGATGATTCGGAGTATGCTGGTGTTATCTAAACGGTTTCAGCTGGATTCGTGTATTTTTATTACAACTGTAGATTTACTGAAACGTTTAGGGCTTAGTGATGCTACTGTGACTAGGGTTTTAGAGGATTACCCTGAAATAGTGTTCTCGAACGAGGAAGAAATCTTGCGAACGATTGAATTTCTGATGGGAATTGGAATTCGAAGGGGTGAAATTGATCGGATCATTTGTTTGATTCCCAAAGTTCTAGGATTTAGGGTTGATGGAAGATTGAAGAGTTTGATTGGTGAGTTCAACGAGTTGGGGTTTGATCAAAACGTGATTGTAAGAGAAATTGTCAGGGAACCGAGAATTTTAGCCACCGAATTAGGAGAAATTTCAAGGTGCCTCGAGTTGCTTAGCAATCTGAAATGCAGGAACTCAATCAAGGAGAAAATCTTTAGAGACGGTGCTTTAAGAGCTGCATTTGAAGTGAAACAGAGAGTTGATTGTTTATGTAAACATGGGCTGATTCGTACAGGAGCATTTAAATTGCTGTGGAAAGAACCGAGGTTGATCACTTACGAATTAGAGAACATTGAAAAGAAAATTGACTTCTTGACCCATAAGATGAAATTTGGTGTTGACTGTTTGATGGATGTTCCAGAATATCTGGGAATCAATTTCGAAAAACAGATTGTTCCTCGCTACCATGTGATTGAATATTTGGAATCAAAAGGATGGCTTGGTTCTCAGGTTGGATTGAGGGAAATTATCAAGCCTAGCAGGCTCAGGTTCTACAACCTTTTTGTTAAGCCTTATCCAGAATGTGGGAAGATGTTTGGGAAATTTGTAGGAGATAACAAAATGAAGAGCCCAAGGCGGCATCCTATTGGACTATGGAAGGTCTTCAAACCACAAAAACATCCAGAATCGAAAGAGGATACTAAAAACATGAAGTCGTTCATGGAATCTTTTATTTAG

Coding sequence (CDS)

ATGGCGGGAAGAATCTTAATCAGAGCTTCTGCATTTCGCCGGTTGATTTCAACCTCAATTCTTACCTCCTCGTTTCAGAGAATCCACCATGTTGTTTCAGCTAAAGCAGCTTCCACCTTCTCCAATCATCTCAAAATTTCCCCGAATCAACCTGATCTCTTACACAAGATTGGATTCACGCAATCCCAAATCAGCAATTTCCTTTCGAAGAATCATCTCTTCTTGACGAATTCCAATTTGCTGGACATTGAAGCTTCTGTTGCGGTTCTTTTATCCTTCAAAATTCTCCCGAGGGATCTCGTTTCCATGGCGATCGACTGTCCTGCGGTTCTGGACTTGGAGTTTCTGAGGAAATGGGAGGCAAGTTTGTCGTTAATTGAATTACGCAATGTTTCTGTATTGATGATTCGGAGTATGCTGGTGTTATCTAAACGGTTTCAGCTGGATTCGTGTATTTTTATTACAACTGTAGATTTACTGAAACGTTTAGGGCTTAGTGATGCTACTGTGACTAGGGTTTTAGAGGATTACCCTGAAATAGTGTTCTCGAACGAGGAAGAAATCTTGCGAACGATTGAATTTCTGATGGGAATTGGAATTCGAAGGGGTGAAATTGATCGGATCATTTGTTTGATTCCCAAAGTTCTAGGATTTAGGGTTGATGGAAGATTGAAGAGTTTGATTGGTGAGTTCAACGAGTTGGGGTTTGATCAAAACGTGATTGTAAGAGAAATTGTCAGGGAACCGAGAATTTTAGCCACCGAATTAGGAGAAATTTCAAGGTGCCTCGAGTTGCTTAGCAATCTGAAATGCAGGAACTCAATCAAGGAGAAAATCTTTAGAGACGGTGCTTTAAGAGCTGCATTTGAAGTGAAACAGAGAGTTGATTGTTTATGTAAACATGGGCTGATTCGTACAGGAGCATTTAAATTGCTGTGGAAAGAACCGAGGTTGATCACTTACGAATTAGAGAACATTGAAAAGAAAATTGACTTCTTGACCCATAAGATGAAATTTGGTGTTGACTGTTTGATGGATGTTCCAGAATATCTGGGAATCAATTTCGAAAAACAGATTGTTCCTCGCTACCATGTGATTGAATATTTGGAATCAAAAGGATGGCTTGGTTCTCAGGTTGGATTGAGGGAAATTATCAAGCCTAGCAGGCTCAGGTTCTACAACCTTTTTGTTAAGCCTTATCCAGAATGTGGGAAGATGTTTGGGAAATTTGTAGGAGATAACAAAATGAAGAGCCCAAGGCGGCATCCTATTGGACTATGGAAGGTCTTCAAACCACAAAAACATCCAGAATCGAAAGAGGATACTAAAAACATGAAGTCGTTCATGGAATCTTTTATTTAG

Homology

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BLAST of CmoCh13G004990 vs. Swiss-Prot
Match: MTEFE_ARATH (Transcription termination factor MTERF15, mitochondrial OS=Arabidopsis thaliana GN=MTERF15 PE=2 SV=1)

HSP 1 Score: 406.0 bits (1042), Expect = 5.5e-112
Identity = 210/401 (52.37%), Postives = 281/401 (70.07%), Query Frame = 1


Query: 52  DLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVL 111
           +LL + GF  S + +FLS+N+  L NS+L++ E S+ +LLS KI  + LVS+  DCP VL
Sbjct: 46  NLLQRYGFPPSSLQHFLSRNN-HLLNSDLVETEISLGILLSLKIPQKSLVSLISDCPNVL 105

Query: 112 DLEFLRKWEASLSLIELRNV-SVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATV 171
             EFLRKW   LS      V S   I+S+L  S R  +    F   V +LK LG  D+TV
Sbjct: 106 RSEFLRKWRVPLSNCGKHGVVSSSAIKSVLEHSSRIGIGPDKFNECVRVLKSLGFCDSTV 165

Query: 172 TRVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGE 231
           +R+L  +P ++  NE EI R IEFL+GIGI R  I+R   + P+VLG   + RLK L+ E
Sbjct: 166 SRILSSFPGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHVFPEVLGIGTETRLKPLLDE 225

Query: 232 FNELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFE 291
           F ++GF ++ + +EI REPR+L  ELGE+ RCLEL++ LKCR  I+  I  +GA RA FE
Sbjct: 226 FMKMGFSKDDVKKEIAREPRVLGLELGELPRCLELINTLKCREVIRVSIISEGAFRAGFE 285

Query: 292 VKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEY 351
           VK RVDCLCK+GLIR  AFK++WKEPR+I YE+E+IEKKI+FLT++M F ++CL DVPEY
Sbjct: 286 VKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEY 345

Query: 352 LGINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKF 411
           LG+N +KQIVPRY+VI+YL+ KG LG  +GL+ +IKPS  RFYNL+V PYPEC ++FGK 
Sbjct: 346 LGVNLQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRFYNLYVMPYPECERIFGK- 405

Query: 412 VGDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMES 452
                ++  +RHP GLWK+ KP  +  +KED +NMKSF+ES
Sbjct: 406 -RKENVRVNKRHPAGLWKLMKPPSNLTTKEDVQNMKSFIES 443

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BLAST of CmoCh13G004990 vs. Swiss-Prot
Match: MTEF4_ARATH (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 72.8 bits (177), Expect = 1.1e-11
Identity = 59/210 (28.10%), Postives = 99/210 (47.14%), Query Frame = 1


Query: 157 VDLLKRLGLSDATVTRVLEDYPEIV-FSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKV 216
           V  L+ L +  + V RVLE YPE++ F  E  +  ++ +L+GIG+ R EI  I+   P++
Sbjct: 219 VKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEI 278

Query: 217 LGFRVDGRLKSLIGEFNELGFDQNVIVREIVREPRILATELGE-ISRCLELLSNLKCRNS 276
           LG RV   +K L+     LG  +    R I + P IL  EL + +   +++L +   R +
Sbjct: 279 LGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRET 338

Query: 277 IKEKIFRDGALRAAFEVKQRVD------CLCKHGLIRTGAFKLLWKEPRLITYELENIEK 336
               I          ++K ++D      C   H L       L+ + P+ ++     + K
Sbjct: 339 SLPSIIAQYPEIIGIDLKPKLDTQRKLLCSAIH-LNPEDLGSLIERMPQFVSLSESPMLK 398

Query: 337 KIDFLTHKMKFGVD----CLMDVPEYLGIN 355
            IDFLT K  F +D     ++  P+ L +N
Sbjct: 399 HIDFLT-KCGFSIDQTREMVIGCPQVLALN 426

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BLAST of CmoCh13G004990 vs. TrEMBL
Match: A0A0A0LW02_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542440 PE=4 SV=1)

HSP 1 Score: 709.1 bits (1829), Expect = 3.4e-201
Identity = 360/454 (79.30%), Postives = 402/454 (88.55%), Query Frame = 1


Query: 1   MAGRILIRASAF-RRLISTSILTSSFQRIHHVVSAKAASTFSNHLKISPNQPDLLHKIGF 60
           MAGRILI ++AF RR++STSIL+SSFQ IHH VSAK   T S+H +IS NQ +LL KIGF
Sbjct: 1   MAGRILIGSTAFLRRVVSTSILSSSFQEIHH-VSAKLVPTSSDHPQISLNQSNLLLKIGF 60

Query: 61  TQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVLDLEFLRKW 120
           TQSQI +FLS+NH F TNSNL DIE S+ +LLSFKI P+DLVS+  DCPAVLDL FL+KW
Sbjct: 61  TQSQIRDFLSQNHRFFTNSNLHDIEPSLPLLLSFKISPKDLVSIVFDCPAVLDLVFLKKW 120

Query: 121 EASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATVTRVLEDYPE 180
           + SLSLI+L NV+V MIRSMLVLS+RF LD  +F   VDLLKR G+SDA V RVLEDYPE
Sbjct: 121 KVSLSLIDLPNVTVSMIRSMLVLSQRFDLDPSLFRRAVDLLKRFGISDAAVIRVLEDYPE 180

Query: 181 IVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGEFNELGFDQN 240
           IVF+NEEEILRTIEFLMGIGIRR EIDR+IC IP+VLGFRV+GRL+SLI EFN LGFDQN
Sbjct: 181 IVFTNEEEILRTIEFLMGIGIRRDEIDRVICSIPRVLGFRVEGRLRSLICEFNGLGFDQN 240

Query: 241 VIVREIVREPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFEVKQRVDCLC 300
           VI REIVREPR LATELGEISRC+ELL NLKCRNSIKE+IFR+G+ RAAFEVKQRVDCLC
Sbjct: 241 VIAREIVREPRTLATELGEISRCVELLRNLKCRNSIKERIFREGSFRAAFEVKQRVDCLC 300

Query: 301 KHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQI 360
           KHGLIRT AFKLLWKEPRL+TYE+ENIEKKIDFL HKMKFGVD L+DVPEYLGINFEKQI
Sbjct: 301 KHGLIRTRAFKLLWKEPRLVTYEIENIEKKIDFLIHKMKFGVDSLIDVPEYLGINFEKQI 360

Query: 361 VPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFVGDNKMKSP 420
           VPRY+VIEYL+SKGWLGSQVGLREIIKPSRLRFYNLFVKPYP+CGKMFGKF GDN+ +SP
Sbjct: 361 VPRYNVIEYLDSKGWLGSQVGLREIIKPSRLRFYNLFVKPYPQCGKMFGKFAGDNRTESP 420

Query: 421 RRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
            RHP+GLWK FKP +HPESKED +NMKSFMES +
Sbjct: 421 SRHPLGLWKAFKPPRHPESKEDIENMKSFMESLV 453

[Close]

BLAST of CmoCh13G004990 vs. TrEMBL
Match: V4TQM5_9ROSI (Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020129mg PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 2.0e-129
Identity = 232/418 (55.50%), Postives = 313/418 (74.88%), Query Frame = 1


Query: 39  TFSN---HLKISPNQPDLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKI 98
           +FSN   + ++  +  +LL + GF  SQ+ +F+SKN   L ++NL D++ S+++LLSFKI
Sbjct: 35  SFSNEKTNYRMQISLANLLQRYGFPPSQLHSFISKNQFLLNSNNLNDLDKSLSILLSFKI 94

Query: 99  LPRDLVSMAIDCPAVLDLEFLRKWEASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFIT 158
             + LVS+  DCP VLD++FL+KWE  +       +S L++R+ L LS+RF++D      
Sbjct: 95  TQKSLVSLINDCPGVLDVQFLKKWEVGVLKFGDLGLSPLVVRNFLELSRRFEIDPDGVFH 154

Query: 159 TVDLLKRLGLSDATVTRVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKV 218
           T+ +LK LG S+ T+ RVLE++P ++  NE E+ R IEF  GIGI    I+RI    P V
Sbjct: 155 TMKVLKGLGFSEGTLNRVLEEFPRVILMNEGEVCRKIEFFEGIGISGEGIERIFSFFPAV 214

Query: 219 LGFRVDGRLKSLIGEFNELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSI 278
           +GF V+ RLK L+ EF   GF +++I +EIVREPR+L+ ELGE SRCLELL +LKCR  I
Sbjct: 215 IGFDVEDRLKPLLDEFCHWGFGEDMIRKEIVREPRVLSMELGEFSRCLELLRSLKCREPI 274

Query: 279 KEKIFRDGALRAAFEVKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTH 338
           K KIF +GA RA FEVK RVDCLCKHGLIR  AFK+LWKEPR++TY +E+IEKKI+FL H
Sbjct: 275 KWKIFGEGAFRAGFEVKLRVDCLCKHGLIRREAFKVLWKEPRVMTYRIEDIEKKIEFLVH 334

Query: 339 KMKFGVDCLMDVPEYLGINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNL 398
           +MKF V CL++VPE+LG+NF+K IVPRY+VI YL  KG LGS+VGL+++IKPSRLRFYNL
Sbjct: 335 RMKFNVHCLVEVPEFLGVNFDKHIVPRYNVIGYLRGKGGLGSEVGLKDLIKPSRLRFYNL 394

Query: 399 FVKPYPECGKMFGKFVGDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
           +VKPYPEC K++G+F G  ++KS  RHP+GLWK+FKP  +PESKED +NMK+FME+ +
Sbjct: 395 YVKPYPECEKLYGRFSG-GEVKS--RHPVGLWKLFKPPSYPESKEDVRNMKAFMETLV 449

[Close]

BLAST of CmoCh13G004990 vs. TrEMBL
Match: M5WC12_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019254mg PE=4 SV=1)

HSP 1 Score: 470.7 bits (1210), Expect = 2.0e-129
Identity = 243/444 (54.73%), Postives = 313/444 (70.50%), Query Frame = 1


Query: 27  RIHHVVSAKAASTFSNH----LKISPNQP---------------DLLHKIGFTQSQISNF 86
           R   + +AK   TFSN        +P +P                LL + GF  S + NF
Sbjct: 13  RFTEIFTAKRNPTFSNQSSQSFSTNPIKPRFSQQSQYRKQISLATLLQRYGFPSSLLHNF 72

Query: 87  LSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVLDLEFLRKWEASLSLIE 146
           LSKNH FL NSN+ ++E S+ +LLSFKI    LVS+  +CP VLD +FL+KWE  LS   
Sbjct: 73  LSKNH-FLLNSNIQELEKSLVILLSFKIPQNSLVSLICECPGVLDFQFLKKWEMGLSNFV 132

Query: 147 LRNVSVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATVTRVLEDYPEIVFSNEEE 206
           L + S LMI+ +L  SKRFQ+D   F  +V++L+ LG  D TV++VLE +P ++  N +E
Sbjct: 133 LLSSSPLMIKGVLEQSKRFQIDPDGFFKSVEVLRGLGFIDGTVSKVLEGFPGVILMNGKE 192

Query: 207 ILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGEFNELGFDQNVIVREIVR 266
           I R +EFL GIGI R  +DR++   P  +GF V+ RLK L+ EF + GF  +VI REI++
Sbjct: 193 IQRRLEFLAGIGIPRDGVDRVLRSFPGFIGFGVEDRLKPLLYEFKDFGFSVDVISREIIK 252

Query: 267 EPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFEVKQRVDCLCKHGLIRTG 326
           EPRIL+ ELGE S+CLE L  LKCR  IKEKIF +G  RA FEVK RVDCLC++GLIR  
Sbjct: 253 EPRILSMELGEFSQCLEFLRTLKCRVPIKEKIFSEGEFRAGFEVKLRVDCLCRYGLIRRE 312

Query: 327 AFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQIVPRYHVIE 386
           AF++LWKEPR I Y++  IE+KI+FL  +MKF   CL++VPEYLG+NFEKQI+PRY+VIE
Sbjct: 313 AFEVLWKEPRSIIYKVGEIERKIEFLIRRMKFNSRCLVEVPEYLGVNFEKQIIPRYNVIE 372

Query: 387 YLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFVGDNKMKSPRRHPIGLW 446
           YL SKG LG +VGL+ ++KPSRLRFYNL+VKPYP+C KMFG+F GD K++S  RHP+GLW
Sbjct: 373 YLRSKGGLGYEVGLKGLVKPSRLRFYNLYVKPYPDCAKMFGRFSGDVKVQS--RHPVGLW 432

Query: 447 KVFKPQKHPESKEDTKNMKSFMES 452
           K+FKPQ++PESKED KN K FMES
Sbjct: 433 KLFKPQRYPESKEDVKNTKLFMES 453

[Close]

BLAST of CmoCh13G004990 vs. TrEMBL
Match: A0A067FHW4_CITSI (Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047121mg PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 5.8e-129
Identity = 229/402 (56.97%), Postives = 305/402 (75.87%), Query Frame = 1


Query: 52  DLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVL 111
           +LL + GF  SQ+ +F+SKN   L ++NL D++ S+++LLSFKI  + LVS+  DCP VL
Sbjct: 7   NLLQRYGFPPSQLHSFISKNQFLLNSNNLNDLDKSLSILLSFKITQKSLVSLINDCPGVL 66

Query: 112 DLEFLRKWEASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATVT 171
           D++FL+KWE  +       +S L++R+ L LS+RF++D      T+ +LK LG S+ T+ 
Sbjct: 67  DVQFLKKWEVGVLKFGDLCLSPLVVRNFLELSRRFEIDPDGVFHTMKVLKGLGFSEGTLN 126

Query: 172 RVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGEF 231
           RVLE++P ++  NE E+ R IEF  GIGI    I+RI    P V+GF V+ RLK L+ EF
Sbjct: 127 RVLEEFPRVILMNEGEVCRKIEFFEGIGISGEGIERIFSFFPGVIGFDVEDRLKPLLDEF 186

Query: 232 NELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFEV 291
              GF +++I +EIVREPR+L+ ELGE SRCLELL +LKCR  IK KI  +GA RA FEV
Sbjct: 187 CHWGFGEDMIRKEIVREPRVLSMELGEFSRCLELLRSLKCREPIKWKILGEGAFRAGFEV 246

Query: 292 KQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYL 351
           K RVDCLCKHGLIR  AFK+LWKEPR++TY +E+IEKKI+FL H+MKF VDCL++VPE+L
Sbjct: 247 KLRVDCLCKHGLIRREAFKVLWKEPRVMTYRIEDIEKKIEFLVHRMKFNVDCLVEVPEFL 306

Query: 352 GINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFV 411
           G+NF+K IVPRY+VI YL  KG LGS+VGL+++IKPSRLRFYNL+VKPYPEC K++G+F 
Sbjct: 307 GVNFDKHIVPRYNVIGYLRGKGGLGSEVGLKDLIKPSRLRFYNLYVKPYPECEKLYGRFS 366

Query: 412 GDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
           G  ++KS  RHP+GLWK+FKP  +PESKED +NMK+FME+ +
Sbjct: 367 G-GEVKS--RHPVGLWKLFKPPSYPESKEDVRNMKAFMETLV 405

[Close]

BLAST of CmoCh13G004990 vs. TrEMBL
Match: D7SIL3_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05130 PE=4 SV=1)

HSP 1 Score: 469.2 bits (1206), Expect = 5.8e-129
Identity = 233/414 (56.28%), Postives = 310/414 (74.88%), Query Frame = 1


Query: 46  ISPNQP--------DLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILP 105
           ISP  P        +L  + GF  SQ+  FL KN +F  N NLL++E S+ +L SF+I  
Sbjct: 40  ISPQSPFRKQISLFNLFQRHGFPPSQLHGFLKKNQIF-QNYNLLELEKSLGILFSFQIPQ 99

Query: 106 RDLVSMAIDCPAVLDLEFLRKWEASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFITTV 165
           + ++S+  DCP +L+ EFL+KWE  ++ + +  VS LMIR++L  S+RF+LD       V
Sbjct: 100 KFILSLISDCPRLLEFEFLKKWEMGIAKLGVSGVSPLMIRNVLEFSRRFELDPDDVSRCV 159

Query: 166 DLLKRLGLSDATVTRVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLG 225
            +LK LG SD TV R+LE++P ++ SNE EI R I+FL+GIGI    ID I   +P +LG
Sbjct: 160 KVLKGLGFSDGTVDRILEEFPRVIMSNESEIQRKIQFLLGIGIPESGIDGIFHSLPGILG 219

Query: 226 FRVDGRLKSLIGEFNELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSIKE 285
             ++ RL+ L+ EF +LGF ++V+ REI REPR+L  ELGE+SRCLEL+  LKCR  IKE
Sbjct: 220 LGIEDRLEPLLDEFGKLGFSEDVVRREISREPRMLGMELGEMSRCLELVGTLKCRVPIKE 279

Query: 286 KIFRDGALRAAFEVKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKM 345
           KIFR+GALRA FEVK RVDCLC++GLIR  AF++LWKEPR+I YE+E+IE+KI+FL H+M
Sbjct: 280 KIFREGALRAGFEVKLRVDCLCRYGLIRREAFEVLWKEPRVIIYEIEDIEEKIEFLVHRM 339

Query: 346 KFGVDCLMDVPEYLGINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFV 405
           ++ V CL++VPEYLG+NF+KQIV R++VIEYL SKG LG +VGL+ +IKPSRLRFYNL+V
Sbjct: 340 RYNVGCLIEVPEYLGVNFDKQIVSRWNVIEYLRSKGGLGCKVGLKGLIKPSRLRFYNLYV 399

Query: 406 KPYPECGKMFGKFVGDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMES 452
           KPYPEC KMFG+F  D ++++  RHP+GLWK+ KPQKHPESK+D KNMK F+ES
Sbjct: 400 KPYPECEKMFGRFSRDVEVRN--RHPVGLWKLMKPQKHPESKDDVKNMKCFVES 450

[Close]

BLAST of CmoCh13G004990 vs. TAIR10
Match: AT1G74120.1 (AT1G74120.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 406.0 bits (1042), Expect = 3.1e-113
Identity = 210/401 (52.37%), Postives = 281/401 (70.07%), Query Frame = 1


Query: 52  DLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVL 111
           +LL + GF  S + +FLS+N+  L NS+L++ E S+ +LLS KI  + LVS+  DCP VL
Sbjct: 46  NLLQRYGFPPSSLQHFLSRNN-HLLNSDLVETEISLGILLSLKIPQKSLVSLISDCPNVL 105

Query: 112 DLEFLRKWEASLSLIELRNV-SVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATV 171
             EFLRKW   LS      V S   I+S+L  S R  +    F   V +LK LG  D+TV
Sbjct: 106 RSEFLRKWRVPLSNCGKHGVVSSSAIKSVLEHSSRIGIGPDKFNECVRVLKSLGFCDSTV 165

Query: 172 TRVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGE 231
           +R+L  +P ++  NE EI R IEFL+GIGI R  I+R   + P+VLG   + RLK L+ E
Sbjct: 166 SRILSSFPGVLLVNEIEIRRKIEFLVGIGIARDNIERFFHVFPEVLGIGTETRLKPLLDE 225

Query: 232 FNELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFE 291
           F ++GF ++ + +EI REPR+L  ELGE+ RCLEL++ LKCR  I+  I  +GA RA FE
Sbjct: 226 FMKMGFSKDDVKKEIAREPRVLGLELGELPRCLELINTLKCREVIRVSIISEGAFRAGFE 285

Query: 292 VKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEY 351
           VK RVDCLCK+GLIR  AFK++WKEPR+I YE+E+IEKKI+FLT++M F ++CL DVPEY
Sbjct: 286 VKLRVDCLCKYGLIRRDAFKVVWKEPRVILYEIEDIEKKIEFLTNRMGFHINCLADVPEY 345

Query: 352 LGINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKF 411
           LG+N +KQIVPRY+VI+YL+ KG LG  +GL+ +IKPS  RFYNL+V PYPEC ++FGK 
Sbjct: 346 LGVNLQKQIVPRYNVIDYLKLKGGLGCDIGLKGLIKPSMKRFYNLYVMPYPECERIFGK- 405

Query: 412 VGDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMES 452
                ++  +RHP GLWK+ KP  +  +KED +NMKSF+ES
Sbjct: 406 -RKENVRVNKRHPAGLWKLMKPPSNLTTKEDVQNMKSFIES 443

[Close]

BLAST of CmoCh13G004990 vs. TAIR10
Match: AT4G02990.1 (AT4G02990.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 72.8 bits (177), Expect = 6.2e-13
Identity = 59/210 (28.10%), Postives = 99/210 (47.14%), Query Frame = 1


Query: 157 VDLLKRLGLSDATVTRVLEDYPEIV-FSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKV 216
           V  L+ L +  + V RVLE YPE++ F  E  +  ++ +L+GIG+ R EI  I+   P++
Sbjct: 219 VKYLQGLDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEI 278

Query: 217 LGFRVDGRLKSLIGEFNELGFDQNVIVREIVREPRILATELGE-ISRCLELLSNLKCRNS 276
           LG RV   +K L+     LG  +    R I + P IL  EL + +   +++L +   R +
Sbjct: 279 LGMRVARIIKPLVEYLEVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRET 338

Query: 277 IKEKIFRDGALRAAFEVKQRVD------CLCKHGLIRTGAFKLLWKEPRLITYELENIEK 336
               I          ++K ++D      C   H L       L+ + P+ ++     + K
Sbjct: 339 SLPSIIAQYPEIIGIDLKPKLDTQRKLLCSAIH-LNPEDLGSLIERMPQFVSLSESPMLK 398

Query: 337 KIDFLTHKMKFGVD----CLMDVPEYLGIN 355
            IDFLT K  F +D     ++  P+ L +N
Sbjct: 399 HIDFLT-KCGFSIDQTREMVIGCPQVLALN 426

[Close]

BLAST of CmoCh13G004990 vs. TAIR10
Match: AT1G62010.1 (AT1G62010.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-09
Identity = 32/96 (33.33%), Postives = 56/96 (58.33%), Query Frame = 1


Query: 309 FKLLWKE-PRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQIVPRYHVIE 368
           F +++K  P  I Y  E ++KK +FL  +M + V  +  +P+ LG + EK+ VPR +VI+
Sbjct: 293 FMMMFKRFPPCIGYSTEAVKKKTEFLVKEMNWPVKAVASIPQVLGYSLEKRTVPRCNVIK 352

Query: 369 YLESKGWLGSQV-GLREIIKPSRLRFYNLFVKPYPE 403
            L SKG L S++  +  ++  +   F NL+V  + +
Sbjct: 353 VLMSKGLLESELPPMSSVLTSTSESFLNLYVSKHDD 388

[Close]

BLAST of CmoCh13G004990 vs. TAIR10
Match: AT5G23930.1 (AT5G23930.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 60.8 bits (146), Expect = 2.4e-09
Identity = 36/150 (24.00%), Postives = 69/150 (46.00%), Query Frame = 1


Query: 262 CLELLSNLKCRNSIKEKIFRDGALRAAFEVKQRVDCLCKHGLIRTGAFKLLWKEPRLITY 321
           CL +    +C  + +EKI +             V    + G  +     ++ + P+ I  
Sbjct: 308 CLVVKKYPECVGTSEEKIVKS------------VKTFLELGFTKDEVLMIIKRHPQCIGL 367

Query: 322 ELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQIVPRYHVIEYLESKGWLGSQVGL 381
             ++++KK +FL   M + +  +   P  LG + EK ++PR +VI+ L S G +G    +
Sbjct: 368 AADSVKKKTEFLVKTMGWPLKVVASTPIVLGFSLEKFVLPRCNVIKALMSNGLIGEMPAI 427

Query: 382 REIIKPSRLRFYNLFVKPY----PECGKMF 408
             ++   +L+F  LFV+ +    PE   +F
Sbjct: 428 SSVLTSPKLKFLKLFVEKHQDVLPELNSIF 445

[Close]

BLAST of CmoCh13G004990 vs. TAIR10
Match: AT1G62085.1 (AT1G62085.1 Mitochondrial transcription termination factor family protein)

HSP 1 Score: 59.3 bits (142), Expect = 7.1e-09
Identity = 46/187 (24.60%), Postives = 88/187 (47.06%), Query Frame = 1


Query: 234 LGFDQNVIVR--EIVREPRILATELGEISRCLELLSNL-KCRNSIKEKIFRDGALRAAFE 293
           L F +N IV+  E +++  +L  ++      L +L    +C N+ ++KI           
Sbjct: 290 LNFSENKIVQTWETLKKCGLLEDDV------LSVLKKFPQCINASEQKIMNS-------- 349

Query: 294 VKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEY 353
               ++     G  R     +  + P+ +    E ++KK +FL  KM + +  ++  P  
Sbjct: 350 ----IETFLGLGFSRDEVAMIAKRFPQCLILSAETVKKKTEFLVKKMNWPLKAVVSTPAV 409

Query: 354 LGINFEKQIVPRYHVIEYLESKGWLGSQV-GLREIIKPSRLRFYNLFVKPYPE---CGKM 413
           LG + EK+ +PR +VI+ L SKG LGS++ G+  ++  +   F   +VK + +     ++
Sbjct: 410 LGYSLEKRTIPRCNVIKALMSKGSLGSELPGMSSVLVCTNEEFLCRYVKNHDDKKIVPEL 458

[Close]

BLAST of CmoCh13G004990 vs. NCBI nr
Match: gi|659068719|ref|XP_008445802.1| (PREDICTED: uncharacterized protein LOC103488724 [Cucumis melo])

HSP 1 Score: 717.6 bits (1851), Expect = 1.4e-203
Identity = 365/454 (80.40%), Postives = 409/454 (90.09%), Query Frame = 1


Query: 1   MAGRILIRASAF-RRLISTSILTSSFQRIHHVVSAKAASTFSNHLKISPNQPDLLHKIGF 60
           MAGRILI ++AF RR+ISTSIL+SSFQ+IHH +SAK   T SNH +IS N  +LLHKIGF
Sbjct: 1   MAGRILIGSTAFLRRVISTSILSSSFQQIHH-ISAKPVPTSSNHPQISLNHSNLLHKIGF 60

Query: 61  TQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVLDLEFLRKW 120
           TQSQI +FLS+NHLF TNSN  DIEAS+ +LLSFKI P+DLVS+  DCPAVLDLEFL+KW
Sbjct: 61  TQSQICDFLSQNHLFFTNSNFHDIEASLPLLLSFKIPPKDLVSIVFDCPAVLDLEFLKKW 120

Query: 121 EASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATVTRVLEDYPE 180
           + SLSLI+L +V+V MIRSMLVLS+RF+LD  +F  TVDLLKR G+SDA V RVLEDYPE
Sbjct: 121 KVSLSLIDLPDVTVSMIRSMLVLSQRFELDPNLFRGTVDLLKRFGISDAAVIRVLEDYPE 180

Query: 181 IVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGEFNELGFDQN 240
           IVF++EEEILRTIEFLMGIGIRR EIDRIIC IP+VLGFRV+GRL+SLI EFN+LGF QN
Sbjct: 181 IVFTDEEEILRTIEFLMGIGIRRYEIDRIICSIPRVLGFRVEGRLRSLICEFNDLGFRQN 240

Query: 241 VIVREIVREPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFEVKQRVDCLC 300
           VIVREIVREPRILATELGEISRC+ELL NLKCRNSIKEKIFR+G+ RAAFEVKQRVDCLC
Sbjct: 241 VIVREIVREPRILATELGEISRCVELLRNLKCRNSIKEKIFREGSFRAAFEVKQRVDCLC 300

Query: 301 KHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQI 360
           KHGLIRT AFKLLWKEPRL+TYE+ENIEKKIDFL HKMK+GVD L+DVPEYLGINFEKQI
Sbjct: 301 KHGLIRTRAFKLLWKEPRLVTYEIENIEKKIDFLIHKMKYGVDSLIDVPEYLGINFEKQI 360

Query: 361 VPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFVGDNKMKSP 420
           VPRY+VIEYL+SKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKF GDN+ +SP
Sbjct: 361 VPRYNVIEYLDSKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFAGDNRTESP 420

Query: 421 RRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
            RHPIGLWK FKP ++PESKED +NMKSFMES +
Sbjct: 421 SRHPIGLWKAFKPPRYPESKEDIENMKSFMESLV 453

[Close]

BLAST of CmoCh13G004990 vs. NCBI nr
Match: gi|449435926|ref|XP_004135745.1| (PREDICTED: uncharacterized protein LOC101219782 [Cucumis sativus])

HSP 1 Score: 709.1 bits (1829), Expect = 4.8e-201
Identity = 360/454 (79.30%), Postives = 402/454 (88.55%), Query Frame = 1


Query: 1   MAGRILIRASAF-RRLISTSILTSSFQRIHHVVSAKAASTFSNHLKISPNQPDLLHKIGF 60
           MAGRILI ++AF RR++STSIL+SSFQ IHH VSAK   T S+H +IS NQ +LL KIGF
Sbjct: 1   MAGRILIGSTAFLRRVVSTSILSSSFQEIHH-VSAKLVPTSSDHPQISLNQSNLLLKIGF 60

Query: 61  TQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVLDLEFLRKW 120
           TQSQI +FLS+NH F TNSNL DIE S+ +LLSFKI P+DLVS+  DCPAVLDL FL+KW
Sbjct: 61  TQSQIRDFLSQNHRFFTNSNLHDIEPSLPLLLSFKISPKDLVSIVFDCPAVLDLVFLKKW 120

Query: 121 EASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATVTRVLEDYPE 180
           + SLSLI+L NV+V MIRSMLVLS+RF LD  +F   VDLLKR G+SDA V RVLEDYPE
Sbjct: 121 KVSLSLIDLPNVTVSMIRSMLVLSQRFDLDPSLFRRAVDLLKRFGISDAAVIRVLEDYPE 180

Query: 181 IVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGEFNELGFDQN 240
           IVF+NEEEILRTIEFLMGIGIRR EIDR+IC IP+VLGFRV+GRL+SLI EFN LGFDQN
Sbjct: 181 IVFTNEEEILRTIEFLMGIGIRRDEIDRVICSIPRVLGFRVEGRLRSLICEFNGLGFDQN 240

Query: 241 VIVREIVREPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFEVKQRVDCLC 300
           VI REIVREPR LATELGEISRC+ELL NLKCRNSIKE+IFR+G+ RAAFEVKQRVDCLC
Sbjct: 241 VIAREIVREPRTLATELGEISRCVELLRNLKCRNSIKERIFREGSFRAAFEVKQRVDCLC 300

Query: 301 KHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQI 360
           KHGLIRT AFKLLWKEPRL+TYE+ENIEKKIDFL HKMKFGVD L+DVPEYLGINFEKQI
Sbjct: 301 KHGLIRTRAFKLLWKEPRLVTYEIENIEKKIDFLIHKMKFGVDSLIDVPEYLGINFEKQI 360

Query: 361 VPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFVGDNKMKSP 420
           VPRY+VIEYL+SKGWLGSQVGLREIIKPSRLRFYNLFVKPYP+CGKMFGKF GDN+ +SP
Sbjct: 361 VPRYNVIEYLDSKGWLGSQVGLREIIKPSRLRFYNLFVKPYPQCGKMFGKFAGDNRTESP 420

Query: 421 RRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
            RHP+GLWK FKP +HPESKED +NMKSFMES +
Sbjct: 421 SRHPLGLWKAFKPPRHPESKEDIENMKSFMESLV 453

[Close]

BLAST of CmoCh13G004990 vs. NCBI nr
Match: gi|567896604|ref|XP_006440790.1| (hypothetical protein CICLE_v10020129mg [Citrus clementina])

HSP 1 Score: 470.7 bits (1210), Expect = 2.9e-129
Identity = 232/418 (55.50%), Postives = 313/418 (74.88%), Query Frame = 1


Query: 39  TFSN---HLKISPNQPDLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKI 98
           +FSN   + ++  +  +LL + GF  SQ+ +F+SKN   L ++NL D++ S+++LLSFKI
Sbjct: 35  SFSNEKTNYRMQISLANLLQRYGFPPSQLHSFISKNQFLLNSNNLNDLDKSLSILLSFKI 94

Query: 99  LPRDLVSMAIDCPAVLDLEFLRKWEASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFIT 158
             + LVS+  DCP VLD++FL+KWE  +       +S L++R+ L LS+RF++D      
Sbjct: 95  TQKSLVSLINDCPGVLDVQFLKKWEVGVLKFGDLGLSPLVVRNFLELSRRFEIDPDGVFH 154

Query: 159 TVDLLKRLGLSDATVTRVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKV 218
           T+ +LK LG S+ T+ RVLE++P ++  NE E+ R IEF  GIGI    I+RI    P V
Sbjct: 155 TMKVLKGLGFSEGTLNRVLEEFPRVILMNEGEVCRKIEFFEGIGISGEGIERIFSFFPAV 214

Query: 219 LGFRVDGRLKSLIGEFNELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSI 278
           +GF V+ RLK L+ EF   GF +++I +EIVREPR+L+ ELGE SRCLELL +LKCR  I
Sbjct: 215 IGFDVEDRLKPLLDEFCHWGFGEDMIRKEIVREPRVLSMELGEFSRCLELLRSLKCREPI 274

Query: 279 KEKIFRDGALRAAFEVKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTH 338
           K KIF +GA RA FEVK RVDCLCKHGLIR  AFK+LWKEPR++TY +E+IEKKI+FL H
Sbjct: 275 KWKIFGEGAFRAGFEVKLRVDCLCKHGLIRREAFKVLWKEPRVMTYRIEDIEKKIEFLVH 334

Query: 339 KMKFGVDCLMDVPEYLGINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNL 398
           +MKF V CL++VPE+LG+NF+K IVPRY+VI YL  KG LGS+VGL+++IKPSRLRFYNL
Sbjct: 335 RMKFNVHCLVEVPEFLGVNFDKHIVPRYNVIGYLRGKGGLGSEVGLKDLIKPSRLRFYNL 394

Query: 399 FVKPYPECGKMFGKFVGDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
           +VKPYPEC K++G+F G  ++KS  RHP+GLWK+FKP  +PESKED +NMK+FME+ +
Sbjct: 395 YVKPYPECEKLYGRFSG-GEVKS--RHPVGLWKLFKPPSYPESKEDVRNMKAFMETLV 449

[Close]

BLAST of CmoCh13G004990 vs. NCBI nr
Match: gi|595851345|ref|XP_007210098.1| (hypothetical protein PRUPE_ppa019254mg [Prunus persica])

HSP 1 Score: 470.7 bits (1210), Expect = 2.9e-129
Identity = 243/444 (54.73%), Postives = 313/444 (70.50%), Query Frame = 1


Query: 27  RIHHVVSAKAASTFSNH----LKISPNQP---------------DLLHKIGFTQSQISNF 86
           R   + +AK   TFSN        +P +P                LL + GF  S + NF
Sbjct: 13  RFTEIFTAKRNPTFSNQSSQSFSTNPIKPRFSQQSQYRKQISLATLLQRYGFPSSLLHNF 72

Query: 87  LSKNHLFLTNSNLLDIEASVAVLLSFKILPRDLVSMAIDCPAVLDLEFLRKWEASLSLIE 146
           LSKNH FL NSN+ ++E S+ +LLSFKI    LVS+  +CP VLD +FL+KWE  LS   
Sbjct: 73  LSKNH-FLLNSNIQELEKSLVILLSFKIPQNSLVSLICECPGVLDFQFLKKWEMGLSNFV 132

Query: 147 LRNVSVLMIRSMLVLSKRFQLDSCIFITTVDLLKRLGLSDATVTRVLEDYPEIVFSNEEE 206
           L + S LMI+ +L  SKRFQ+D   F  +V++L+ LG  D TV++VLE +P ++  N +E
Sbjct: 133 LLSSSPLMIKGVLEQSKRFQIDPDGFFKSVEVLRGLGFIDGTVSKVLEGFPGVILMNGKE 192

Query: 207 ILRTIEFLMGIGIRRGEIDRIICLIPKVLGFRVDGRLKSLIGEFNELGFDQNVIVREIVR 266
           I R +EFL GIGI R  +DR++   P  +GF V+ RLK L+ EF + GF  +VI REI++
Sbjct: 193 IQRRLEFLAGIGIPRDGVDRVLRSFPGFIGFGVEDRLKPLLYEFKDFGFSVDVISREIIK 252

Query: 267 EPRILATELGEISRCLELLSNLKCRNSIKEKIFRDGALRAAFEVKQRVDCLCKHGLIRTG 326
           EPRIL+ ELGE S+CLE L  LKCR  IKEKIF +G  RA FEVK RVDCLC++GLIR  
Sbjct: 253 EPRILSMELGEFSQCLEFLRTLKCRVPIKEKIFSEGEFRAGFEVKLRVDCLCRYGLIRRE 312

Query: 327 AFKLLWKEPRLITYELENIEKKIDFLTHKMKFGVDCLMDVPEYLGINFEKQIVPRYHVIE 386
           AF++LWKEPR I Y++  IE+KI+FL  +MKF   CL++VPEYLG+NFEKQI+PRY+VIE
Sbjct: 313 AFEVLWKEPRSIIYKVGEIERKIEFLIRRMKFNSRCLVEVPEYLGVNFEKQIIPRYNVIE 372

Query: 387 YLESKGWLGSQVGLREIIKPSRLRFYNLFVKPYPECGKMFGKFVGDNKMKSPRRHPIGLW 446
           YL SKG LG +VGL+ ++KPSRLRFYNL+VKPYP+C KMFG+F GD K++S  RHP+GLW
Sbjct: 373 YLRSKGGLGYEVGLKGLVKPSRLRFYNLYVKPYPDCAKMFGRFSGDVKVQS--RHPVGLW 432

Query: 447 KVFKPQKHPESKEDTKNMKSFMES 452
           K+FKPQ++PESKED KN K FMES
Sbjct: 433 KLFKPQRYPESKEDVKNTKLFMES 453

[Close]

BLAST of CmoCh13G004990 vs. NCBI nr
Match: gi|985447654|ref|XP_006477700.2| (PREDICTED: uncharacterized protein LOC102607736 [Citrus sinensis])

HSP 1 Score: 469.9 bits (1208), Expect = 4.9e-129
Identity = 232/418 (55.50%), Postives = 313/418 (74.88%), Query Frame = 1


Query: 39  TFSN---HLKISPNQPDLLHKIGFTQSQISNFLSKNHLFLTNSNLLDIEASVAVLLSFKI 98
           +FSN   + ++  +  +LL + GF  SQ+ +F+SKN   L ++NL D++ S+++LLSFKI
Sbjct: 84  SFSNEKTNYRMQISLANLLQRYGFPPSQLHSFISKNQFLLNSNNLNDLDKSLSILLSFKI 143

Query: 99  LPRDLVSMAIDCPAVLDLEFLRKWEASLSLIELRNVSVLMIRSMLVLSKRFQLDSCIFIT 158
             + LVS+  DCP VLD++FL+KWE  +       +S L++R+ L LS+RF++D      
Sbjct: 144 TQKSLVSLINDCPGVLDVQFLKKWEVGVLKFGDLCLSPLVVRNFLELSRRFEIDPDGVFQ 203

Query: 159 TVDLLKRLGLSDATVTRVLEDYPEIVFSNEEEILRTIEFLMGIGIRRGEIDRIICLIPKV 218
           T+ +LK LG S+ T+ RVLE++P ++  NE E+ R IEF  GIGI    I+RI    P V
Sbjct: 204 TMKVLKGLGFSEGTLNRVLEEFPRVILMNEGEVCRKIEFFEGIGISGEGIERIFSFFPGV 263

Query: 219 LGFRVDGRLKSLIGEFNELGFDQNVIVREIVREPRILATELGEISRCLELLSNLKCRNSI 278
           +GF V+ RLK L+ EF   GF +++I +EIVREPR+L+ ELGE SRCLELL +LKCR  I
Sbjct: 264 IGFDVEDRLKPLLDEFCHWGFGEDMIRKEIVREPRVLSMELGEFSRCLELLRSLKCREPI 323

Query: 279 KEKIFRDGALRAAFEVKQRVDCLCKHGLIRTGAFKLLWKEPRLITYELENIEKKIDFLTH 338
           K KI  +GA RA FEVK RVDCLCKHGLIR  AFK+LWKEPR++TY +E+IEKKI+FL H
Sbjct: 324 KWKILGEGAFRAGFEVKLRVDCLCKHGLIRREAFKVLWKEPRVMTYRIEDIEKKIEFLVH 383

Query: 339 KMKFGVDCLMDVPEYLGINFEKQIVPRYHVIEYLESKGWLGSQVGLREIIKPSRLRFYNL 398
           +MKF VDCL++VPE+LG+NF+K IVPRY+VI YL  KG LGS+VGL+++IKPSRLRFYNL
Sbjct: 384 RMKFNVDCLVEVPEFLGVNFDKHIVPRYNVIGYLRGKGGLGSEVGLKDLIKPSRLRFYNL 443

Query: 399 FVKPYPECGKMFGKFVGDNKMKSPRRHPIGLWKVFKPQKHPESKEDTKNMKSFMESFI 454
           +VKPYPEC K++G+F G  ++KS  RHP+GLWK+FKP  +PESKED +NMK+FME+ +
Sbjct: 444 YVKPYPECEKLYGRFSG-GEVKS--RHPVGLWKLFKPPSYPESKEDVRNMKAFMETLV 498

The following BLAST results are available for this feature:

BLAST of CmoCh13G004990 vs. Swiss-Prot


Match Name	E-value	Identity	Description
MTEFE_ARATH	5.5e-112	52.37	Transcription termination factor MTERF15, mitochondrial OS=Arabidopsis thaliana ...	[more]
MTEF4_ARATH	1.1e-11	28.10	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana G...	[more]

BLAST of CmoCh13G004990 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LW02_CUCSA	3.4e-201	79.30	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G542440 PE=4 SV=1	[more]
V4TQM5_9ROSI	2.0e-129	55.50	Uncharacterized protein OS=Citrus clementina GN=CICLE_v10020129mg PE=4 SV=1	[more]
M5WC12_PRUPE	2.0e-129	54.73	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa019254mg PE=4 SV=1	[more]
A0A067FHW4_CITSI	5.8e-129	56.97	Uncharacterized protein OS=Citrus sinensis GN=CISIN_1g047121mg PE=4 SV=1	[more]
D7SIL3_VITVI	5.8e-129	56.28	Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05130 PE=4 SV=...	[more]

BLAST of CmoCh13G004990 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G74120.1	3.1e-113	52.37	Mitochondrial transcription termination factor family protein	[more]
AT4G02990.1	6.2e-13	28.10	Mitochondrial transcription termination factor family protein	[more]
AT1G62010.1	1.9e-09	33.33	Mitochondrial transcription termination factor family protein	[more]
AT5G23930.1	2.4e-09	24.00	Mitochondrial transcription termination factor family protein	[more]
AT1G62085.1	7.1e-09	24.60	Mitochondrial transcription termination factor family protein	[more]

BLAST of CmoCh13G004990 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659068719\|ref\|XP_008445802.1\|	1.4e-203	80.40	PREDICTED: uncharacterized protein LOC103488724 [Cucumis melo]	[more]
gi\|449435926\|ref\|XP_004135745.1\|	4.8e-201	79.30	PREDICTED: uncharacterized protein LOC101219782 [Cucumis sativus]	[more]
gi\|567896604\|ref\|XP_006440790.1\|	2.9e-129	55.50	hypothetical protein CICLE_v10020129mg [Citrus clementina]	[more]
gi\|595851345\|ref\|XP_007210098.1\|	2.9e-129	54.73	hypothetical protein PRUPE_ppa019254mg [Prunus persica]	[more]
gi\|985447654\|ref\|XP_006477700.2\|	4.9e-129	55.50	PREDICTED: uncharacterized protein LOC102607736 [Citrus sinensis]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR003690	MTERF

Vocabulary: **Biological Process**
Term	Definition
GO:0006355	regulation of transcription, DNA-templated

Vocabulary: **Molecular Function**
Term	Definition
GO:0003690	double-stranded DNA binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation
cellular_component	GO:0005739	mitochondrion
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003723	RNA binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004990.1	CmoCh13G004990.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 155..225 score: 5.6E-11coord: 231..385 score: 6.6
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 242..272 score: 330.0coord: 341..375 score: 21.0coord: 309..340 score: 0.08coord: 206..237 score: 4.1coord: 171..201 score: 0
None	No IPR available	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 52..429 score: 1.5E
None	No IPR available	PANTHER	PTHR13068:SF23	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 52..429 score: 1.5E

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G004990	Cucsa.167430	Cucumber (Gy14) v1	cgycmoB0478
CmoCh13G004990	CmaCh13G004640	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G004990	Cla019750	Watermelon (97103) v1	cmowmB177
CmoCh13G004990	Csa1G542440	Cucumber (Chinese Long) v2	cmocuB205
CmoCh13G004990	MELO3C002869	Melon (DHL92) v3.5.1	cmomeB179
CmoCh13G004990	ClCG03G008530	Watermelon (Charleston Gray)	cmowcgB188
CmoCh13G004990	CSPI01G25290	Wild cucumber (PI 183967)	cmocpiB207
CmoCh13G004990	Lsi02G009910	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G004990	Cp4.1LG20g05780	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G004990	MELO3C002869.2	Melon (DHL92) v3.6.1	cmomedB201
CmoCh13G004990	CsaV3_1G037600	Cucumber (Chinese Long) v3	cmocucB0237
CmoCh13G004990	Cla97C03G059790	Watermelon (97103) v2	cmowmbB213
CmoCh13G004990	Bhi08G000816	Wax gourd	cmowgoB0246
CmoCh13G004990	CsGy1G024680	Cucumber (Gy14) v2	cgybcmoB070
CmoCh13G004990	Carg21421	Silver-seed gourd	carcmoB0536

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G004990	Cucumber (Gy14) v2	cgybcmoB710
CmoCh13G004990	Melon (DHL92) v3.6.1	cmomedB217
CmoCh13G004990	Silver-seed gourd	carcmoB0605
CmoCh13G004990	Silver-seed gourd	carcmoB0993
CmoCh13G004990	Cucumber (Chinese Long) v3	cmocucB0254
CmoCh13G004990	Watermelon (97103) v2	cmowmbB199
CmoCh13G004990	Wax gourd	cmowgoB0242
CmoCh13G004990	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh13G004990	Cucurbita moschata (Rifu)	cmocmoB183
CmoCh13G004990	Cucurbita moschata (Rifu)	cmocmoB190
CmoCh13G004990	Cucumber (Gy14) v1	cgycmoB0033
CmoCh13G004990	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G004990	Cucurbita maxima (Rimu)	cmacmoB847
CmoCh13G004990	Wild cucumber (PI 183967)	cmocpiB198
CmoCh13G004990	Wild cucumber (PI 183967)	cmocpiB218
CmoCh13G004990	Cucumber (Chinese Long) v2	cmocuB215
CmoCh13G004990	Melon (DHL92) v3.5.1	cmomeB195
CmoCh13G004990	Watermelon (Charleston Gray)	cmowcgB176
CmoCh13G004990	Watermelon (97103) v1	cmowmB188
CmoCh13G004990	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G004990	Cucurbita pepo (Zucchini)	cmocpeB186
CmoCh13G004990	Cucurbita pepo (Zucchini)	cmocpeB199