CmoCh13G004230 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G004230
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Octicosapeptide/Phox/Bem1p domain-containing protein / tetratricopeptide repeat-containing protein
Location	Cmo_Chr13 : 5266262 .. 5266686 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

TGGAAAAGGGGGTTGCATTTTCGCTTTATCTGTTTGGGGAAATCTGGGACTCGAAAAAAGAAGGGTAGTTCGAATCATGCTTGTTCGGATGTTAATTCGACTCCAAATGCTAATAGGGGTGTTGATTTGGATTCTTCTATCGTTTTGAAAAGAGCCCATGAGTTTGAAGAAGATGGGAATAAAAGGTTCCGGAGTTATGATTTTGTTGGTGCTCTTGAGCAGTATGAAATGCACTTCGTCTTACTCCCAAAACCCACCCTGATCGAGCTGTGTTTCATAGCAATAGAGCGGCTTGTTTGATGCAATTGAAACCAATTGATCATGATACTGCTATTGCTGAGTGTACCATGGACCTCCAGCTCCAGCCCCAATTTGTTCGTGCTCTCCTTTGGAGGGCTCGTGCTTTTGAGGCCATTGGGAATTGA

mRNA sequence

TGGAAAAGGGGGTTGCATTTTCGCTTTATCTGTTTGGGGAAATCTGGGACTCGAAAAAAGAAGGGTAGTTCGAATCATGCTTGTTCGGATGTTAATTCGACTCCAAATGCTAATAGGGGTGTTGATTTGGATTCTTCTATCGTTTTGAAAAGAGCCCATGAGTTTGAAGAAGATGGGAATAAAAGGTTCCGGAGTTATGATTTTGTTGGTGCTCTTGAGCAGTATGAAATGCACTTCGTCTTACTCCCAAAACCCACCCTGATCGAGCTAGCGGCTTGTTTGATGCAATTGAAACCAATTGATCATGATACTGCTATTGCTGAGTGTACCATGGACCTCCAGCTCCAGCCCCAATTTGTTCGTGCTCTCCTTTGGAGGGCTCGTGCTTTTGAGGCCATTGGGAATTGA

Coding sequence (CDS)

TGGAAAAGGGGGTTGCATTTTCGCTTTATCTGTTTGGGGAAATCTGGGACTCGAAAAAAGAAGGGTAGTTCGAATCATGCTTGTTCGGATGTTAATTCGACTCCAAATGCTAATAGGGGTGTTGATTTGGATTCTTCTATCGTTTTGAAAAGAGCCCATGAGTTTGAAGAAGATGGGAATAAAAGGTTCCGGAGTTATGATTTTGTTGGTGCTCTTGAGCAGTATGAAATGCACTTCGTCTTACTCCCAAAACCCACCCTGATCGAGCTAGCGGCTTGTTTGATGCAATTGAAACCAATTGATCATGATACTGCTATTGCTGAGTGTACCATGGACCTCCAGCTCCAGCCCCAATTTGTTCGTGCTCTCCTTTGGAGGGCTCGTGCTTTTGAGGCCATTGGGAATTGA

Homology

[Close]

BLAST of CmoCh13G004230 vs. TrEMBL
Match: A0A0A0M0N6_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699630 PE=4 SV=1)

HSP 1 Score: 162.5 bits (410), Expect = 3.5e-37
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGA 71
           +GKSG+RKKKG+S+HA S VNSTP AN GVDLDSSI LKRAHE +E+GNKRF++ D+VGA
Sbjct: 1   MGKSGSRKKKGASSHASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGA 60

Query: 72  LEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLW 131
           LEQYE    L PK            AACLMQ+KPID+DT I+ECTM LQ+QP+FVRALL 
Sbjct: 61  LEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYDTVISECTMALQVQPRFVRALLR 120

Query: 132 RARAFEAIG 135
           RARA+EAIG
Sbjct: 121 RARAYEAIG 129

[Close]

BLAST of CmoCh13G004230 vs. TrEMBL
Match: W9QM65_9ROSA (Tetratricopeptide repeat protein 1 OS=Morus notabilis GN=L484_013661 PE=4 SV=1)

HSP 1 Score: 153.7 bits (387), Expect = 1.6e-34
Identity = 85/130 (65.38%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNST-PNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVG 71
           +GKSG RKKKG SN    D NST P+AN GVDLDSSI LKRAHE +E+GNKRF++ D+VG
Sbjct: 1   MGKSGGRKKKGGSNQVSGDNNSTTPSANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVG 60

Query: 72  ALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALL 131
           ALEQY+    L PK            AACLMQ+KPID++T IAEC+M LQ+QPQFVRALL
Sbjct: 61  ALEQYDSALRLTPKTHPDRAVFHSNRAACLMQMKPIDYETVIAECSMALQVQPQFVRALL 120

Query: 132 WRARAFEAIG 135
            RARAFEAIG
Sbjct: 121 RRARAFEAIG 130

[Close]

BLAST of CmoCh13G004230 vs. TrEMBL
Match: M5X9V9_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001748mg PE=4 SV=1)

HSP 1 Score: 151.8 bits (382), Expect = 6.2e-34
Identity = 83/129 (64.34%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGA 71
           +GKSG RKKKG+SN    D NS+P AN GVDLDSSI LKRA E +E+GNKRF+S D+VGA
Sbjct: 1   MGKSGGRKKKGASNQVSIDGNSSPMANGGVDLDSSIFLKRAQELKEEGNKRFQSKDYVGA 60

Query: 72  LEQYEMHFVLLPK--PTLI----ELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLW 131
           LEQY+    L PK  P         AACLMQ+KPID++T +AECTM LQ+QP++VRALL 
Sbjct: 61  LEQYDNALKLTPKIHPDRAVFHSNRAACLMQMKPIDYETVVAECTMALQVQPRYVRALLR 120

Query: 132 RARAFEAIG 135
           RARAFEAIG
Sbjct: 121 RARAFEAIG 129

[Close]

BLAST of CmoCh13G004230 vs. TrEMBL
Match: B9RXE4_RICCO (Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis GN=RCOM_0903110 PE=4 SV=1)

HSP 1 Score: 144.8 bits (364), Expect = 7.5e-32
Identity = 82/139 (58.99%), Postives = 98/139 (70.50%), Query Frame = 1


Query: 12  LGKSGTRKKKGSS----------NHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNK 71
           +GKSG RKKKGS+          N + S+  +TPNAN  VD DSSI LKRAHE +E+GNK
Sbjct: 1   MGKSGGRKKKGSAGLNQVLSTGDNGSSSNSTTTPNANGAVDFDSSIFLKRAHELKEEGNK 60

Query: 72  RFRSYDFVGALEQYEMHFVLLPKPTLIEL------AACLMQLKPIDHDTAIAECTMDLQL 131
           RF++ D+VGALEQY+    L PK            AACLMQ+KPID+DT IAECT+ LQ+
Sbjct: 61  RFQNKDYVGALEQYDNALRLTPKTHPDRAVFHSNRAACLMQMKPIDYDTVIAECTLALQV 120

Query: 132 QPQFVRALLWRARAFEAIG 135
           QP+FVRALL RARAFEAIG
Sbjct: 121 QPRFVRALLRRARAFEAIG 139

[Close]

BLAST of CmoCh13G004230 vs. TrEMBL
Match: A0A067JL16_JATCU (Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21161 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 4.9e-31
Identity = 85/136 (62.50%), Postives = 97/136 (71.32%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSN-HACSD----VNST--PNANRGVDLDSSIVLKRAHEFEEDGNKRFR 71
           +GKSG RKKKGS   +  SD     NST  PNAN  VD DSSI LKRAHE +E+GNKRF+
Sbjct: 1   MGKSGGRKKKGSGGLNQVSDGGKISNSTTVPNANGAVDFDSSIFLKRAHELKEEGNKRFQ 60

Query: 72  SYDFVGALEQYEMHFVLLPKPTLIEL------AACLMQLKPIDHDTAIAECTMDLQLQPQ 131
           + D+VGALEQY+    L PK            AACLMQ+KPID+DT IAECTM LQ+QP+
Sbjct: 61  NKDYVGALEQYDSALRLTPKTHPDRAVFHSNRAACLMQMKPIDYDTVIAECTMALQVQPR 120

Query: 132 FVRALLWRARAFEAIG 135
           FVRALL RARAFEAIG
Sbjct: 121 FVRALLRRARAFEAIG 136

[Close]

BLAST of CmoCh13G004230 vs. TAIR10
Match: AT1G62390.1 (AT1G62390.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 129.0 bits (323), Expect = 2.2e-30
Identity = 75/139 (53.96%), Postives = 94/139 (67.63%), Query Frame = 1


Query: 12  LGKSGTRKKK-GSSNHACSDVNSTPNA---------NRGVDLDSSIVLKRAHEFEEDGNK 71
           +GKSG RKKK G SN   S VNS+  +         N GVD D+SI LKRAHE +E+GNK
Sbjct: 1   MGKSGGRKKKSGGSNSNSSQVNSSETSGLSKPSTIVNGGVDFDASIFLKRAHELKEEGNK 60

Query: 72  RFRSYDFVGALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQL 131
           +F++ D+VGALEQYE    L+PK            AACLMQ+KPID+++ I+EC+M L+ 
Sbjct: 61  KFQARDYVGALEQYENGIKLIPKSHPDRAVFHSNRAACLMQMKPIDYESVISECSMALKS 120

Query: 132 QPQFVRALLWRARAFEAIG 135
           QP F RALL RARAFEA+G
Sbjct: 121 QPGFTRALLRRARAFEAVG 139

[Close]

BLAST of CmoCh13G004230 vs. TAIR10
Match: AT2G25290.1 (AT2G25290.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 69.3 bits (168), Expect = 2.0e-12
Identity = 38/104 (36.54%), Postives = 61/104 (58.65%), Query Frame = 1


Query: 36  NANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKP------TLIE 95
           +A +  D D +I + RA E +E+GNK F+  D+ GA+ +Y+    LLP+           
Sbjct: 36  SATKSFDDDMTIFINRALELKEEGNKLFQKRDYEGAMFRYDKAVKLLPRDHGDVAYLRTS 95

Query: 96  LAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWRARAFEAI 134
           +A+C MQ+   ++  AI EC + L+  P+F +ALL RAR +EA+
Sbjct: 96  MASCYMQMGLGEYPNAINECNLALEASPRFSKALLKRARCYEAL 139

[Close]

BLAST of CmoCh13G004230 vs. TAIR10
Match: AT4G32070.1 (AT4G32070.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 63.9 bits (154), Expect = 8.5e-11
Identity = 40/127 (31.50%), Postives = 66/127 (51.97%), Query Frame = 1


Query: 13  GKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGAL 72
           G  G   K G + H         + +R  D D  I + RA E +E+GNK F+  D  GA+
Sbjct: 20  GGGGGGGKSGKTYHR--------STSRVFDEDMEIFISRALELKEEGNKLFQKRDHEGAM 79

Query: 73  EQYEMHFVLLPKPTL------IELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLWR 132
             ++    LLPK  +        +A+C MQ+   ++  AI+EC + L+  P++ +AL+ R
Sbjct: 80  LSFDKALKLLPKDHIDVAYLRTSMASCYMQMGLGEYPNAISECNLALEASPRYSKALVRR 138

Query: 133 ARAFEAI 134
           +R +EA+
Sbjct: 140 SRCYEAL 138

[Close]

BLAST of CmoCh13G004230 vs. TAIR10
Match: AT5G20360.1 (AT5G20360.1 Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein)

HSP 1 Score: 58.5 bits (140), Expect = 3.6e-09
Identity = 33/91 (36.26%), Postives = 52/91 (57.14%), Query Frame = 1


Query: 49  LKRAHEFEEDGNKRFRSYDFVGALEQYEMHFVLLPKPTL------IELAACLMQLKPIDH 108
           + +A   +E+GNK F+  D+ GA+ +Y     +LPK  +        +A+C MQL+P + 
Sbjct: 123 VSKAQGLKEEGNKLFQKRDYDGAMFKYGEAIKILPKDHVEVSHVRANVASCYMQLEPGEF 182

Query: 109 DTAIAECTMDLQLQPQFVRALLWRARAFEAI 134
             AI EC + L + P   +ALL RAR +EA+
Sbjct: 183 AKAIHECDLALSVTPDHNKALLKRARCYEAL 213

[Close]

BLAST of CmoCh13G004230 vs. NCBI nr
Match: gi|659118187|ref|XP_008458988.1| (PREDICTED: uncharacterized protein LOC103498240 [Cucumis melo])

HSP 1 Score: 164.1 bits (414), Expect = 1.7e-37
Identity = 88/129 (68.22%), Postives = 101/129 (78.29%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGA 71
           +GKSG+RKKKG SNHA S VNSTP AN GVDLDSSI LKRAHE +E+GNKRF++ D+VGA
Sbjct: 1   MGKSGSRKKKGGSNHASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGA 60

Query: 72  LEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLW 131
           LEQYE    L PK            AACLMQ+KPID+DT I+ECTM LQ+QP+FVRALL 
Sbjct: 61  LEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYDTVISECTMALQVQPRFVRALLR 120

Query: 132 RARAFEAIG 135
           RARA+EAIG
Sbjct: 121 RARAYEAIG 129

[Close]

BLAST of CmoCh13G004230 vs. NCBI nr
Match: gi|449455373|ref|XP_004145427.1| (PREDICTED: uncharacterized protein LOC101214983 [Cucumis sativus])

HSP 1 Score: 162.5 bits (410), Expect = 5.0e-37
Identity = 87/129 (67.44%), Postives = 102/129 (79.07%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGA 71
           +GKSG+RKKKG+S+HA S VNSTP AN GVDLDSSI LKRAHE +E+GNKRF++ D+VGA
Sbjct: 1   MGKSGSRKKKGASSHASSAVNSTPIANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVGA 60

Query: 72  LEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLW 131
           LEQYE    L PK            AACLMQ+KPID+DT I+ECTM LQ+QP+FVRALL 
Sbjct: 61  LEQYESALRLTPKTHPDRAVFHSNRAACLMQMKPIDYDTVISECTMALQVQPRFVRALLR 120

Query: 132 RARAFEAIG 135
           RARA+EAIG
Sbjct: 121 RARAYEAIG 129

[Close]

BLAST of CmoCh13G004230 vs. NCBI nr
Match: gi|645236421|ref|XP_008224729.1| (PREDICTED: uncharacterized protein LOC103324451 [Prunus mume])

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-34
Identity = 84/129 (65.12%), Postives = 99/129 (76.74%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGA 71
           +GKSG RKKKG+SN   SD NS+P AN GVDLDSSI LKRA E +E+GNKRF+S D+VGA
Sbjct: 1   MGKSGGRKKKGASNQVSSDGNSSPMANGGVDLDSSIFLKRAQELKEEGNKRFQSKDYVGA 60

Query: 72  LEQYEMHFVLLPK--PTLI----ELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLW 131
           LEQY+    L PK  P         AACLMQ+KPID++T +AECTM LQ+QP++VRALL 
Sbjct: 61  LEQYDNALKLTPKIHPDRAVFHSNRAACLMQMKPIDYETVVAECTMALQVQPRYVRALLR 120

Query: 132 RARAFEAIG 135
           RARAFEAIG
Sbjct: 121 RARAFEAIG 129

[Close]

BLAST of CmoCh13G004230 vs. NCBI nr
Match: gi|703078845|ref|XP_010090999.1| (Tetratricopeptide repeat protein 1 [Morus notabilis])

HSP 1 Score: 153.7 bits (387), Expect = 2.3e-34
Identity = 85/130 (65.38%), Postives = 98/130 (75.38%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNST-PNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVG 71
           +GKSG RKKKG SN    D NST P+AN GVDLDSSI LKRAHE +E+GNKRF++ D+VG
Sbjct: 1   MGKSGGRKKKGGSNQVSGDNNSTTPSANGGVDLDSSIFLKRAHELKEEGNKRFQNKDYVG 60

Query: 72  ALEQYEMHFVLLPKP------TLIELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALL 131
           ALEQY+    L PK            AACLMQ+KPID++T IAEC+M LQ+QPQFVRALL
Sbjct: 61  ALEQYDSALRLTPKTHPDRAVFHSNRAACLMQMKPIDYETVIAECSMALQVQPQFVRALL 120

Query: 132 WRARAFEAIG 135
            RARAFEAIG
Sbjct: 121 RRARAFEAIG 130

[Close]

BLAST of CmoCh13G004230 vs. NCBI nr
Match: gi|595914012|ref|XP_007214641.1| (hypothetical protein PRUPE_ppa001748mg [Prunus persica])

HSP 1 Score: 151.8 bits (382), Expect = 8.8e-34
Identity = 83/129 (64.34%), Postives = 98/129 (75.97%), Query Frame = 1


Query: 12  LGKSGTRKKKGSSNHACSDVNSTPNANRGVDLDSSIVLKRAHEFEEDGNKRFRSYDFVGA 71
           +GKSG RKKKG+SN    D NS+P AN GVDLDSSI LKRA E +E+GNKRF+S D+VGA
Sbjct: 1   MGKSGGRKKKGASNQVSIDGNSSPMANGGVDLDSSIFLKRAQELKEEGNKRFQSKDYVGA 60

Query: 72  LEQYEMHFVLLPK--PTLI----ELAACLMQLKPIDHDTAIAECTMDLQLQPQFVRALLW 131
           LEQY+    L PK  P         AACLMQ+KPID++T +AECTM LQ+QP++VRALL 
Sbjct: 61  LEQYDNALKLTPKIHPDRAVFHSNRAACLMQMKPIDYETVVAECTMALQVQPRYVRALLR 120

Query: 132 RARAFEAIG 135
           RARAFEAIG
Sbjct: 121 RARAFEAIG 129

The following BLAST results are available for this feature:

BLAST of CmoCh13G004230 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G004230 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0N6_CUCSA	3.5e-37	67.44	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G699630 PE=4 SV=1	[more]
W9QM65_9ROSA	1.6e-34	65.38	Tetratricopeptide repeat protein 1 OS=Morus notabilis GN=L484_013661 PE=4 SV=1	[more]
M5X9V9_PRUPE	6.2e-34	64.34	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa001748mg PE=4 SV=1	[more]
B9RXE4_RICCO	7.5e-32	58.99	Heat shock protein 70 (HSP70)-interacting protein, putative OS=Ricinus communis ...	[more]
A0A067JL16_JATCU	4.9e-31	62.50	Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21161 PE=4 SV=1	[more]

BLAST of CmoCh13G004230 vs. TAIR10


Match Name	E-value	Identity	Description
AT1G62390.1	2.2e-30	53.96	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratr...	[more]
AT2G25290.1	2.0e-12	36.54	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratr...	[more]
AT4G32070.1	8.5e-11	31.50	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratr...	[more]
AT5G20360.1	3.6e-09	36.26	Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratr...	[more]

BLAST of CmoCh13G004230 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659118187\|ref\|XP_008458988.1\|	1.7e-37	68.22	PREDICTED: uncharacterized protein LOC103498240 [Cucumis melo]	[more]
gi\|449455373\|ref\|XP_004145427.1\|	5.0e-37	67.44	PREDICTED: uncharacterized protein LOC101214983 [Cucumis sativus]	[more]
gi\|645236421\|ref\|XP_008224729.1\|	1.8e-34	65.12	PREDICTED: uncharacterized protein LOC103324451 [Prunus mume]	[more]
gi\|703078845\|ref\|XP_010090999.1\|	2.3e-34	65.38	Tetratricopeptide repeat protein 1 [Morus notabilis]	[more]
gi\|595914012\|ref\|XP_007214641.1\|	8.8e-34	64.34	hypothetical protein PRUPE_ppa001748mg [Prunus persica]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR011990	TPR-like_helical_dom_sf

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0005515	protein binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G004230.1	CmoCh13G004230.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain	GENE3D	G3DSA:1.25.40.10		coord: 51..135 score: 3.0
IPR011990	Tetratricopeptide-like helical domain	unknown	SSF48452	TPR-like	coord: 52..135 score: 2.7
None	No IPR available	PANTHER	PTHR22904	TPR REPEAT CONTAINING PROTEIN	coord: 47..134 score: 1.7
None	No IPR available	PANTHER	PTHR22904:SF331	CARBOXYLATE CLAMP-TETRATRICOPEPTIDE REPEAT PROTEIN	coord: 47..134 score: 1.7

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G004230	Cla97C01G009990	Watermelon (97103) v2	cmowmbB200

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G004230	Cucumber (Chinese Long) v3	cmocucB0228
CmoCh13G004230	Watermelon (97103) v2	cmowmbB195
CmoCh13G004230	Wax gourd	cmowgoB0246
CmoCh13G004230	Wax gourd	cmowgoB0255
CmoCh13G004230	Wax gourd	cmowgoB0271
CmoCh13G004230	Cucurbita moschata (Rifu)	cmocmoB168
CmoCh13G004230	Cucurbita moschata (Rifu)	cmocmoB170
CmoCh13G004230	Cucurbita maxima (Rimu)	cmacmoB398
CmoCh13G004230	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G004230	Wild cucumber (PI 183967)	cmocpiB200
CmoCh13G004230	Cucumber (Chinese Long) v2	cmocuB196
CmoCh13G004230	Melon (DHL92) v3.5.1	cmomeB179
CmoCh13G004230	Watermelon (Charleston Gray)	cmowcgB177
CmoCh13G004230	Watermelon (97103) v1	cmowmB184
CmoCh13G004230	Watermelon (97103) v1	cmowmB192
CmoCh13G004230	Cucurbita pepo (Zucchini)	cmocpeB182
CmoCh13G004230	Cucurbita pepo (Zucchini)	cmocpeB201
CmoCh13G004230	Bottle gourd (USVL1VR-Ls)	cmolsiB196
CmoCh13G004230	Bottle gourd (USVL1VR-Ls)	cmolsiB197
CmoCh13G004230	Cucumber (Gy14) v2	cgybcmoB065
CmoCh13G004230	Melon (DHL92) v3.6.1	cmomedB201
CmoCh13G004230	Silver-seed gourd	carcmoB1390