CmoCh13G003750 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003750
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Short-chain dehydrogenase/reductase
Location	Cmo_Chr13 : 4763337 .. 4764933 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTAATTTTAATCGGTCACTTGAATATCTACGACCACTTCACTATTTGGTGCACTACTAGGCTAGAAGGCAAAGTGGCAGTAATCACAGGTGCGGCCAGCGGAATTTGGGAGTCCACAGCAAAACTCTTCTTTAAGCATGGAGCCAAAGTGGTGCTTGCAGACATCCTACACGATGTCGGTCACTCTCTTTCCCGCCATCTCTGTTCTTCGTCATCTTCATTCGTCCACTGCGATGTAACGAAAGAGAAAGAGATTGAAGATGCGGTTAACACAGCTATTTCTAAGTATGGAAAGTTAGACATCATGTTGAACAGCGCAGGCATTTCTAGAACTCTAAAATTCAACATTCTTGAAAACGAATTATCAAAGTTGAAGCCAGAAGATATAGCCGAAGCTGCTTTGTATTTAGCAAGTGATGCATCGAGATTTGTGAGTGGACATAACTTAATTGTTGATGGAGGCTTCACCGCAACAAACCAAGGTCTTTATTCCTACCAATAATAAAGTTGAAACGAAGAACTACTTGTTTCAGACTTCAAGTTCTTTCCTAAACTTGATCATGAATTATGTCCTAATTTTATTTGTGTGGTTTTTGTCTCAATTGAGCTATGTCATATTTCTCAGGTTTAACATTATTATAAGAATATGAATTCTAATAATGCAATTTAATTTTTCGCTGCTTAATCTCTAATTTGGTTATTGTCTCAATCTCTAACTTGAGATAGCTTAGGTTTCCTCATTACGTAGAAGTACCGCCTAATGCTATATTAATTGATATGCTCACTTGAGTTGGAGCCTATAAAGTTATGAGATTGTAATCACGCCCTAATGGACGACAATGTCCTCATAATGACCTTTAAACCTTCGACAGGATGAAATGTCACTAAAAAAAAGGTGGGTAGCTCTAGAAGCATCCCAAGAATTAAAAACACGTTATTGGACATGAAATTCGAGGAAGTGTTCCCAAGAGAATGATAAGTTTTGGTAGACTTCACCATCCACAAGAGGATGTTCGTGAGTGGACACCTGTAGTCGCAGTTCAGTACAGTTATCACCGAACAACGTAGTAATTTAAGGAAAAGGGACAAGAGGATGTCCAACCGTGAAAATCAAGAGTAAAAAACTTTCATGGCCAAAATTTGTTAAGGAAGGGAGAATTTGTAATACTCGAGCCATAGCGGGATTAAATACCTAATTTTTTTTTCAAGCTCAAACTTTTGGGATTTTTATCTTATGAACCAGAAACCGAACCGAGTCACTTCGGGTTCAGAAAAAACAACTCAACCCAACCCAACCCTTACAATTCGGATTGGGTTGATCCAAGTTGTTGAGTTGTTGGATTGGATGTAATCACGAGTGGATTGGTATGTGAACTGAGTCGTCACTGCCAAAAGTCGAATTTGGTGGGCGACATTGCTGTTAGTAACTGTTGCAAAACATGAACCACTCACTCACACACTACCTTTCATTTCCTTCATTGTCCCACAAATGTCAAAATGATTACTTTGTTCTTGTCTTCTTTTTATAAATAAAATCCCTTTTCTTTTTTGTTTTTTTTTTTTTTCCTTTTTTGAAAATATTTTAGATGTTTAA

mRNA sequence

ATGCTTAATTTTAATCGGCTAGAAGGCAAAGTGGCAGTAATCACAGGTGCGGCCAGCGGAATTTGGGAGTCCACAGCAAAACTCTTCTTTAAGCATGGAGCCAAAGTGGTGCTTGCAGACATCCTACACGATGTCGGTCACTCTCTTTCCCGCCATCTCTGTTCTTCGTCATCTTCATTCGTCCACTGCGATGTAACGAAAGAGAAAGAGATTGAAGATGCGGTTAACACAGCTATTTCTAAGTATGGAAAGTTAGACATCATGTTGAACAGCGCAGGCATTTCTAGAACTCTAAAATTCAACATTCTTGAAAACGAATTATCAAAGTTGAAGCCAGAAGATATAGCCGAAGCTGCTTTGTATTTAGCAAGTGATGCATCGAGATTTGTGAGTGGACATAACTTAATTGTTGATGGAGGCTTCACCGCAACAAACCAAGATGTTTAA

Coding sequence (CDS)

ATGCTTAATTTTAATCGGCTAGAAGGCAAAGTGGCAGTAATCACAGGTGCGGCCAGCGGAATTTGGGAGTCCACAGCAAAACTCTTCTTTAAGCATGGAGCCAAAGTGGTGCTTGCAGACATCCTACACGATGTCGGTCACTCTCTTTCCCGCCATCTCTGTTCTTCGTCATCTTCATTCGTCCACTGCGATGTAACGAAAGAGAAAGAGATTGAAGATGCGGTTAACACAGCTATTTCTAAGTATGGAAAGTTAGACATCATGTTGAACAGCGCAGGCATTTCTAGAACTCTAAAATTCAACATTCTTGAAAACGAATTATCAAAGTTGAAGCCAGAAGATATAGCCGAAGCTGCTTTGTATTTAGCAAGTGATGCATCGAGATTTGTGAGTGGACATAACTTAATTGTTGATGGAGGCTTCACCGCAACAAACCAAGATGTTTAA

Homology

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BLAST of CmoCh13G003750 vs. Swiss-Prot
Match: SILD_FORIN (Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1)

HSP 1 Score: 115.9 bits (289), Expect = 3.7e-25
Identity = 55/101 (54.46%), Postives = 79/101 (78.22%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGKVA+ITG ASGI E+TAKLF +HGAKV +AD+  ++GHS+   + +S+S+++HCDV
Sbjct: 14  RLEGKVALITGGASGIGETTAKLFSQHGAKVAIADVQDELGHSVVEAIGTSNSTYIHCDV 73

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENE 107
           T E  +++AV+  +S YGKLDIM ++AGIS   +  I++NE
Sbjct: 74  TNEDGVKNAVDNTVSTYGKLDIMFSNAGISDPNRPRIIDNE 114

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BLAST of CmoCh13G003750 vs. Swiss-Prot
Match: SILD_PODPE (Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1)

HSP 1 Score: 107.5 bits (267), Expect = 1.3e-22
Identity = 60/127 (47.24%), Postives = 84/127 (66.14%), Query Frame = 1


Query: 5   NRLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSS-SSFVHC 64
           NRL+ KVA+ITG A GI E+TAKLF ++GAKVV+ADI  D G  +  ++ S    SFVHC
Sbjct: 12  NRLQDKVAIITGGAGGIGETTAKLFVRYGAKVVIADIADDHGQKVCNNIGSPDVISFVHC 71

Query: 65  DVTKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILE--NELSKLKPEDIAEAALY 124
           DVTK++++ + V+T I+K+GKLDIM  + G+  T  ++ILE  NE  K   +     A  
Sbjct: 72  DVTKDEDVRNLVDTTIAKHGKLDIMFGNVGVLSTTPYSILEAGNEDFKRVMDINVYGAFL 131

Query: 125 LASDASR 129
           +A  A+R
Sbjct: 132 VAKHAAR 138

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BLAST of CmoCh13G003750 vs. Swiss-Prot
Match: TPRL2_ERYCB (Tropinone reductase-like 2 OS=Erythroxylum coca PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.5e-22
Identity = 55/107 (51.40%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGKVA+ITG ASGI   TA+LF ++GAKVV+ADI  D+G +L+  L    + ++HCDV
Sbjct: 10  RLEGKVAIITGGASGIGACTAELFHENGAKVVIADIQDDLGQALATKL-GGKACYIHCDV 69

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGI--SRTLKFNILENELSKL 111
           +KE E+ + V+T ++KYG+LDIM N+AGI   + L  +++E+E S L
Sbjct: 70  SKEDEVINLVDTTVAKYGRLDIMFNNAGIIEGQGLPVSVVESEKSDL 115

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BLAST of CmoCh13G003750 vs. Swiss-Prot
Match: MOMAS_ORYSJ (Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 8.5e-22
Identity = 53/99 (53.54%), Postives = 72/99 (72.73%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           +L GKVAVITG ASGI   TA+LF KHGA+VV+ADI  ++G SL   L   +SS+VHCDV
Sbjct: 14  KLVGKVAVITGGASGIGACTARLFVKHGARVVVADIQDELGASLVAELGPDASSYVHCDV 73

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILE 105
           T E ++  AV+ A++++GKLD+M N+AG+S    F + E
Sbjct: 74  TNEGDVAAAVDHAVARFGKLDVMFNNAGVSGPPCFRMSE 112

[Close]

BLAST of CmoCh13G003750 vs. Swiss-Prot
Match: TPRL1_ERYCB (Tropinone reductase-like 1 OS=Erythroxylum coca PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 1.4e-21
Identity = 54/107 (50.47%), Postives = 79/107 (73.83%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGKVA+ITG ASGI   TA+LF ++GAKVV+ADI  D+G +L+  L    + ++HCDV
Sbjct: 10  RLEGKVAIITGGASGIGACTAELFHENGAKVVIADIQDDLGQALATKL-GGKACYIHCDV 69

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGI--SRTLKFNILENELSKL 111
           +KE ++ + V+T ++KYG+LDIM N+AGI   + L  +++E+E S L
Sbjct: 70  SKEDDVINLVDTTVAKYGRLDIMFNNAGIIEGQGLPVSVVESEKSDL 115

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BLAST of CmoCh13G003750 vs. TrEMBL
Match: A0A0A0LT69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168890 PE=4 SV=1)

HSP 1 Score: 146.4 bits (368), Expect = 2.8e-32
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGK A+ITG A GI ES AK FF  GAKVV+ADIL D+G+SLS HL SSS+SFVHC+V
Sbjct: 12  RLEGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNV 71

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELS 109
           TKE ++E+ VNTA+SKYGKLDIM N+AGI   LKFNILENE S
Sbjct: 72  TKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYS 114

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BLAST of CmoCh13G003750 vs. TrEMBL
Match: I3SBG4_MEDTR (Short-chain dehydrogenase/reductase OS=Medicago truncatula GN=MTR_4g052350 PE=2 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 69/106 (65.09%), Postives = 89/106 (83.96%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGKVA+ITG ASGI E+TA+LF  HGA+VV+ADI  D+GHS+ + L  SS+++VHCDV
Sbjct: 13  RLEGKVALITGGASGIGEATARLFSNHGAQVVIADIQDDIGHSICQELHKSSATYVHCDV 72

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLK 112
           TKEK+IE+AVNT +SK+GKLDIM N+AGI+   K NILEN+LS+ +
Sbjct: 73  TKEKDIENAVNTTVSKHGKLDIMFNNAGITGINKTNILENKLSEFQ 118

[Close]

BLAST of CmoCh13G003750 vs. TrEMBL
Match: A0A072UJ88_MEDTR (Short-chain dehydrogenase/reductase OS=Medicago truncatula GN=MTR_4g052300 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 76/121 (62.81%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 1   MLN-FNRLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSS 60
           MLN F RLEGKVA+ITG ASGI E+TA+LF +HGA+VV+ADI  D GHS+ + L  SSSS
Sbjct: 1   MLNSFTRLEGKVALITGGASGIGEATARLFSEHGAQVVIADIQDDKGHSICKELQKSSSS 60

Query: 61  FVHCDVTKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLKPEDIAEAA 120
           +V CDVTKE++IE+AVNT + KYGKLDIM N+AGIS   K  ILEN+LS+   ED+ +  
Sbjct: 61  YVRCDVTKEEDIENAVNTTVFKYGKLDIMFNNAGISGVNKTKILENKLSEF--EDVIKVN 119

[Close]

BLAST of CmoCh13G003750 vs. TrEMBL
Match: A0A072UVC6_MEDTR (Short-chain dehydrogenase/reductase OS=Medicago truncatula GN=MTR_4g052320 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.6e-30
Identity = 76/121 (62.81%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 1   MLN-FNRLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSS 60
           MLN F RLEGKVA+ITG ASGI E+TA+LF +HGA+VV+ADI  D GHS+ + L  SSSS
Sbjct: 1   MLNSFTRLEGKVALITGGASGIGEATARLFSEHGAQVVIADIQDDKGHSICKELQKSSSS 60

Query: 61  FVHCDVTKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLKPEDIAEAA 120
           +V CDVTKE++IE+AVNT + KYGKLDIM N+AGIS   K  ILEN+LS+   ED+ +  
Sbjct: 61  YVRCDVTKEEDIENAVNTTVFKYGKLDIMFNNAGISGVNKTKILENKLSEF--EDVIKVN 119

[Close]

BLAST of CmoCh13G003750 vs. TrEMBL
Match: U5GBK6_POPTR (Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s10820g PE=3 SV=1)

HSP 1 Score: 138.3 bits (347), Expect = 7.7e-30
Identity = 67/106 (63.21%), Postives = 87/106 (82.08%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGKVA+ITG +SGI ESTA+LF KHGAKVV+ADI  ++GHS+ + L    +SF+HCDV
Sbjct: 13  RLEGKVALITGGSSGIGESTARLFVKHGAKVVIADIQDELGHSVCKELEPEPASFIHCDV 72

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLK 112
           T+EK++E+AVNTA+SKYGKLDIM N+AG   T K NILEN+ ++ +
Sbjct: 73  TQEKDVENAVNTAVSKYGKLDIMFNNAGTGGTPKTNILENDKAEFE 118

[Close]

BLAST of CmoCh13G003750 vs. TAIR10
Match: AT3G26760.1 (AT3G26760.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 99.4 bits (246), Expect = 2.0e-21
Identity = 49/90 (54.44%), Postives = 70/90 (77.78%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           +LEGKVAVITG ASGI ++TA+ F   GA+V++ DI  + GH ++  L  S++ F+ CDV
Sbjct: 35  KLEGKVAVITGGASGIGKATAEEFVSQGAQVIIVDIDEEAGHMVATEL-GSAAHFLRCDV 94

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGIS 96
           T+E++I  AV TA++++GKLD+MLNSAGIS
Sbjct: 95  TEEEQIAKAVETAVTRHGKLDVMLNSAGIS 123

[Close]

BLAST of CmoCh13G003750 vs. TAIR10
Match: AT2G47120.1 (AT2G47120.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 95.1 bits (235), Expect = 3.8e-20
Identity = 43/94 (45.74%), Postives = 64/94 (68.09%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGK+ +ITG ASGI    A+LF  HGAKVV+ D+  ++G +++  +    +SF  CDV
Sbjct: 5   RLEGKIVIITGGASGIGADAARLFTDHGAKVVIVDVQEELGQNVAVLIGKDKASFYRCDV 64

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLK 100
           T E E+EDAV   + K+GKLD++ ++AG+   L+
Sbjct: 65  TNETEVEDAVKFTVEKHGKLDVLFSNAGVLEPLE 98

[Close]

BLAST of CmoCh13G003750 vs. TAIR10
Match: AT2G47130.1 (AT2G47130.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 94.7 bits (234), Expect = 5.0e-20
Identity = 42/89 (47.19%), Postives = 62/89 (69.66%), Query Frame = 1


Query: 6  RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
          RL+GK+A+ITG ASGI     +LF  HGAKVV+ D   ++G +++  +    +SF  CDV
Sbjct: 5  RLDGKIAIITGGASGIGAEAVRLFTDHGAKVVIVDFQEELGQNVAVSVGKDKASFYRCDV 64

Query: 66 TKEKEIEDAVNTAISKYGKLDIMLNSAGI 95
          T EKE+E+AV   + KYGKLD++ ++AG+
Sbjct: 65 TNEKEVENAVKFTVEKYGKLDVLFSNAGV 93

[Close]

BLAST of CmoCh13G003750 vs. TAIR10
Match: AT2G47140.1 (AT2G47140.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 94.4 bits (233), Expect = 6.5e-20
Identity = 43/105 (40.95%), Postives = 72/105 (68.57%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RL+GK+ +ITG ASGI   + +LF +HGA+VV+ D+  ++G +++  +    +S+ HCDV
Sbjct: 5   RLDGKIVIITGGASGIGAESVRLFTEHGARVVIVDVQDELGQNVAVSIGEDKASYYHCDV 64

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKL 111
           T E E+E+AV   + KYGKLD++ ++AG+      +IL+  L++L
Sbjct: 65  TNETEVENAVKFTVEKYGKLDVLFSNAGVIEPF-VSILDLNLNEL 108

[Close]

BLAST of CmoCh13G003750 vs. TAIR10
Match: AT3G51680.1 (AT3G51680.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 93.2 bits (230), Expect = 1.4e-19
Identity = 45/93 (48.39%), Postives = 67/93 (72.04%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSS----FV 65
           RLEGKVA+ITG A GI ++T  LF +HGA VV+AD+ +  G SL++ L S  +S    F+
Sbjct: 31  RLEGKVAIITGGAHGIGKATVMLFARHGATVVIADVDNVAGSSLAKSLSSHKTSPMVAFI 90

Query: 66  HCDVTKEKEIEDAVNTAISKYGKLDIMLNSAGI 95
            CDV+ E ++E+ VN  +++YG+LDI+ N+AG+
Sbjct: 91  SCDVSVEADVENLVNVTVARYGRLDILFNNAGV 123

[Close]

BLAST of CmoCh13G003750 vs. NCBI nr
Match: gi|449443650|ref|XP_004139590.1| (PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus])

HSP 1 Score: 146.4 bits (368), Expect = 4.1e-32
Identity = 74/103 (71.84%), Postives = 85/103 (82.52%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGK A+ITG A GI ES AK FF  GAKVV+ADIL D+G+SLS HL SSS+SFVHC+V
Sbjct: 12  RLEGKAAIITGGARGIGESIAKHFFNPGAKVVIADILDDLGNSLSNHLSSSSTSFVHCNV 71

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELS 109
           TKE ++E+ VNTA+SKYGKLDIM N+AGI   LKFNILENE S
Sbjct: 72  TKETDVENVVNTAVSKYGKLDIMFNNAGIPGALKFNILENEYS 114

[Close]

BLAST of CmoCh13G003750 vs. NCBI nr
Match: gi|502145851|ref|XP_004506207.1| (PREDICTED: secoisolariciresinol dehydrogenase-like [Cicer arietinum])

HSP 1 Score: 141.4 bits (355), Expect = 1.3e-30
Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 3   NFNRLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVH 62
           +  RLEGKVA+ITG ASGI E+T +LF KHGA+VV+ADI  ++GHS+ + L +SS+SFVH
Sbjct: 10  SLKRLEGKVALITGGASGIGEATVRLFSKHGAQVVIADIQDEMGHSICKDLNNSSASFVH 69

Query: 63  CDVTKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLK 112
           CD TKE ++E+AVNT +SKYGKLDIM N+AGIS   K NILEN+LS+ +
Sbjct: 70  CDTTKETDVENAVNTTVSKYGKLDIMFNNAGISGVNKTNILENKLSEFE 118

[Close]

BLAST of CmoCh13G003750 vs. NCBI nr
Match: gi|922367235|ref|XP_013455784.1| (short-chain dehydrogenase/reductase [Medicago truncatula])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 76/121 (62.81%), Postives = 94/121 (77.69%), Query Frame = 1


Query: 1   MLN-FNRLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSS 60
           MLN F RLEGKVA+ITG ASGI E+TA+LF +HGA+VV+ADI  D GHS+ + L  SSSS
Sbjct: 1   MLNSFTRLEGKVALITGGASGIGEATARLFSEHGAQVVIADIQDDKGHSICKELQKSSSS 60

Query: 61  FVHCDVTKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLKPEDIAEAA 120
           +V CDVTKE++IE+AVNT + KYGKLDIM N+AGIS   K  ILEN+LS+   ED+ +  
Sbjct: 61  YVRCDVTKEEDIENAVNTTVFKYGKLDIMFNNAGISGVNKTKILENKLSEF--EDVIKVN 119

[Close]

BLAST of CmoCh13G003750 vs. NCBI nr
Match: gi|922367241|ref|XP_013455787.1| (short-chain dehydrogenase/reductase [Medicago truncatula])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 69/106 (65.09%), Postives = 89/106 (83.96%), Query Frame = 1


Query: 6   RLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVHCDV 65
           RLEGKVA+ITG ASGI E+TA+LF  HGA+VV+ADI  D+GHS+ + L  SS+++VHCDV
Sbjct: 13  RLEGKVALITGGASGIGEATARLFSNHGAQVVIADIQDDIGHSICQELHKSSATYVHCDV 72

Query: 66  TKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLK 112
           TKEK+IE+AVNT +SK+GKLDIM N+AGI+   K NILEN+LS+ +
Sbjct: 73  TKEKDIENAVNTTVSKHGKLDIMFNNAGITGINKTNILENKLSEFQ 118

[Close]

BLAST of CmoCh13G003750 vs. NCBI nr
Match: gi|502145849|ref|XP_004506206.1| (PREDICTED: secoisolariciresinol dehydrogenase-like [Cicer arietinum])

HSP 1 Score: 140.6 bits (353), Expect = 2.2e-30
Identity = 69/109 (63.30%), Postives = 89/109 (81.65%), Query Frame = 1


Query: 3   NFNRLEGKVAVITGAASGIWESTAKLFFKHGAKVVLADILHDVGHSLSRHLCSSSSSFVH 62
           +  RLEGKVA+ITG ASGI E+TA+LF KHGA+VV+ADI  ++GHS+ + L  S++S+VH
Sbjct: 10  SLRRLEGKVALITGGASGIGEATARLFSKHGAQVVIADIQDEMGHSICKDLNKSTASYVH 69

Query: 63  CDVTKEKEIEDAVNTAISKYGKLDIMLNSAGISRTLKFNILENELSKLK 112
           CD TKEK+IE+AVNT +SKYGKLDIM N+AGI    K NILEN+LS+ +
Sbjct: 70  CDTTKEKDIENAVNTTVSKYGKLDIMFNNAGIVGVNKTNILENKLSEFE 118

The following BLAST results are available for this feature:

BLAST of CmoCh13G003750 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SILD_FORIN	3.7e-25	54.46	Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1	[more]
SILD_PODPE	1.3e-22	47.24	Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1	[more]
TPRL2_ERYCB	6.5e-22	51.40	Tropinone reductase-like 2 OS=Erythroxylum coca PE=2 SV=1	[more]
MOMAS_ORYSJ	8.5e-22	53.54	Momilactone A synthase OS=Oryza sativa subsp. japonica GN=Os04g0179200 PE=2 SV=1	[more]
TPRL1_ERYCB	1.4e-21	50.47	Tropinone reductase-like 1 OS=Erythroxylum coca PE=2 SV=1	[more]

BLAST of CmoCh13G003750 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT69_CUCSA	2.8e-32	71.84	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168890 PE=4 SV=1	[more]
I3SBG4_MEDTR	1.6e-30	65.09	Short-chain dehydrogenase/reductase OS=Medicago truncatula GN=MTR_4g052350 PE=2 ...	[more]
A0A072UJ88_MEDTR	1.6e-30	62.81	Short-chain dehydrogenase/reductase OS=Medicago truncatula GN=MTR_4g052300 PE=4 ...	[more]
A0A072UVC6_MEDTR	1.6e-30	62.81	Short-chain dehydrogenase/reductase OS=Medicago truncatula GN=MTR_4g052320 PE=4 ...	[more]
U5GBK6_POPTR	7.7e-30	63.21	Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0005s10820g P...	[more]

BLAST of CmoCh13G003750 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G26760.1	2.0e-21	54.44	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT2G47120.1	3.8e-20	45.74	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT2G47130.1	5.0e-20	47.19	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT2G47140.1	6.5e-20	40.95	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT3G51680.1	1.4e-19	48.39	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of CmoCh13G003750 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443650\|ref\|XP_004139590.1\|	4.1e-32	71.84	PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus]	[more]
gi\|502145851\|ref\|XP_004506207.1\|	1.3e-30	63.30	PREDICTED: secoisolariciresinol dehydrogenase-like [Cicer arietinum]	[more]
gi\|922367235\|ref\|XP_013455784.1\|	2.2e-30	62.81	short-chain dehydrogenase/reductase [Medicago truncatula]	[more]
gi\|922367241\|ref\|XP_013455787.1\|	2.2e-30	65.09	short-chain dehydrogenase/reductase [Medicago truncatula]	[more]
gi\|502145849\|ref\|XP_004506206.1\|	2.2e-30	63.30	PREDICTED: secoisolariciresinol dehydrogenase-like [Cicer arietinum]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR002347	SDR_fam
IPR016040	NAD(P)-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003750.1	CmoCh13G003750.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002347	Short-chain dehydrogenase/reductase SDR	PRINTS	PR00081	GDHRDH	coord: 83..94 score: 6.1E-8coord: 11..28 score: 6.
IPR002347	Short-chain dehydrogenase/reductase SDR	PANTHER	PTHR24322	FAMILY NOT NAMED	coord: 14..106 score: 4.6
IPR002347	Short-chain dehydrogenase/reductase SDR	PFAM	PF00106	adh_short	coord: 10..105 score: 2.3
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 111..144 score: 8.1E-11coord: 6..99 score: 1.4
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 3..143 score: 6.41
None	No IPR available	unknown	Coil	Coil	coord: 146..148 scor
None	No IPR available	PANTHER	PTHR24322:SF600	SUBFAMILY NOT NAMED	coord: 14..106 score: 4.6
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 110..142 score: 1.

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003750	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003750	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003750	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003750	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003750	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003750	Melon (DHL92) v3.5.1	cmomeB182
CmoCh13G003750	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003750	Watermelon (97103) v1	cmowmB189
CmoCh13G003750	Cucurbita pepo (Zucchini)	cmocpeB180
CmoCh13G003750	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003750	Cucumber (Gy14) v2	cgybcmoB072
CmoCh13G003750	Melon (DHL92) v3.6.1	cmomedB209
CmoCh13G003750	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003750	Watermelon (97103) v2	cmowmbB192
CmoCh13G003750	Wax gourd	cmowgoB0254
CmoCh13G003750	Cucurbita moschata (Rifu)	cmocmoB168