CmoCh13G003710 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003710
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Short-chain dehydrogenase/reductase
Location	Cmo_Chr13 : 4730906 .. 4732946 (-)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGGTTAATTGCGTGTCGCCCCATGTAGTGCCCTCGCAGATGACTAGGGATCTATTTAAGCTTGAAGATGGCGATGAGTTTCCTAATGTTTATTCGCATTTCAAATGTGGAGATATTTTAAGGGCCGAAGATATAGCTGAAGCTGCTTTGTATTTAGCAAGTGATGCATCGAAATTTGTGAGTGGACATAACTTAATTGTTGATGGAGGCTTCACTTCAGCAAACCAAGGTCTTTGTTCCTACCAATAATAAAGTTGAAACGAAGAACTACTTGTTTCAGACTTCGGGTTCTTTTCTAAACTTGATCATGGATTATGTTTCTAGTTTTATTTTTATGGTTTGTGTCTCAATTGAACTATTTCAACTTTTGTTTGTTGCATATTTCTCGTGTTTAACATTATTATAAGAATATGAATTCTAATAATGTAATTTAATTTTTCGCTTTGGTTCTTGTCTCAATTGTGGTGTTGACATCATCTTCATCCATTTAAGTTGTCGAGTATTAGTAGTCTGAACAATAGTAGGGTTGGATCCTGCAATTACTGAGCATTTAGCTAGAGACATGGAAATTACTTTGTATTTTAGTAGAAAATCCATACCTAACACGACATTAAAGTCATCCATCTAGACAATCACAAAATCGACCTGATCATTCCAATTCTCCAGTTTGATTGGAGTTCCTTTTACAATTCTCTAGGTACACTTCGAGGGCTTGGCGTTAGCTGGCACACACTTGATATTGTCAATATCTTTCTTAGGTGATCTTTGTGATCCACCTCCACCTTGAAACGCTGATATACCATCAATGATGACAATAATGATCATATCAAGAAAGTCCTACGAACACTTGATTTGTTAGTTCTTTAAACTCGACAAGACAATAGTTAGGTCGAAGGACATAACGGTAATCTCTTAATTCTCTTATAGCTCCCGAATGAAACTTTTGGCATGTTCTTCTCTCTGATCCTTATTTGAATGTAACATGACCTTGACATGACCCTTGTGGTCCTTATTCTATTACCAAGGATAGCCTCATAGTTCCTTCTCATGTGACCAACTCGGGTTCTCATAGCGTGACACCCTGTCACTTGCTTGCTAGAGCACTATTACTTAGCTAAATTTTGTAGAGCCTAGTTGGGAGTAGCTAATCATTTCATGAGTCTTTTTGGTGTTTACCTAAGCTAGTTCTCATAATATCTCAAGGTTGGCCTAGTCGAGATTCCTGTAGCAATGATATCTCGTCACTGGCTCATCCAAACACATCAACCTCTTTGGTTCTTGTACTGGATCCTAGAGAACTCTCTGTAAGCTCAAGTGTGGTGGCTAGCTTTTTCTTAAGTTTTTTTATACTTCCTCTACAGATAGGTGTAACGTTCTATACCCAAGTTTCAAATCATAATTTAAATCTGGATTTAGTACCTAATGGCCCCGACCATCTCTTGGATCCCGTGTGACATACTATGTCTTCTGTTAGTCTTGTCTACTGGCTAGTCATGAATACTACCACCACCGAGGTTGTTCTTAAATCGTGTTATCTAGAGGCTCTCTTCTATCTGAGCTTGTTTCACAAGCATTTCATATGAAATCGTGCATTTGGAATTTGAGTTCAACTCTTCATGATCTAGATCACCTAAACGAGTGTAGGTTCTTATCATCGCAGCACCTAGTCACTCCTTTCTTTAGATGATGAAAGAGTGGGTCATAGCTTGACCCATTAGTATTGTCCTTCACTAGCCAACCATGAGGGTTCCCGACCTTGACTTTGTGAACATGCTTGTCTAATGTTGAGGACGGCTCAGGTCACAGTCATATAATCTTGATAACTACATGCTGCTACTAAGCTTGAACCTCTCCTCTAAAGTCTATAACAAATTCATCTCTTCTAAACCAAGGATGCTACTCGAAACAAGTACTTTTTGGGACTCTGTAGCTATTTCTATGTACTCCTATTGTAAATGAAAAAACATTTTGTTATCCTAAATTTTAATATTTTGACGACTTTATATATAAATTACCTTTTTTTTTTCAAGTTCATTGA

mRNA sequence

ATGAGGGTTAATTGCGTGTCGCCCCATGTAGTGCCCTCGCAGATGACTAGGGATCTATTTAAGCTTGAAGATGGCGATGAGTTTCCTAATGTTTATTCGCATTTCAAATGTGGAGATATTTTAAGGGCCGAAGATATAGCTGAAGCTGCTTTGTATTTAGCAAGTGATGCATCGAAATTTGTGAGTGGACATAACTTAATTGTTGATGGAGGCTTCACTTCAGCAAACCAAGTTCATTGA

Coding sequence (CDS)

ATGAGGGTTAATTGCGTGTCGCCCCATGTAGTGCCCTCGCAGATGACTAGGGATCTATTTAAGCTTGAAGATGGCGATGAGTTTCCTAATGTTTATTCGCATTTCAAATGTGGAGATATTTTAAGGGCCGAAGATATAGCTGAAGCTGCTTTGTATTTAGCAAGTGATGCATCGAAATTTGTGAGTGGACATAACTTAATTGTTGATGGAGGCTTCACTTCAGCAAACCAAGTTCATTGA

Homology

[Close]

BLAST of CmoCh13G003710 vs. Swiss-Prot
Match: SILD_PODPE (Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 1.3e-13
Identity = 37/78 (47.44%), Postives = 55/78 (70.51%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDG--DEFPNVYSHFKCGDILRAEDIAEAALYLASDAS 60
           +RVNCVSP++V S +  D+F ++    +E  +  ++ K G +LRAED+A+A  YLA D S
Sbjct: 190 IRVNCVSPYIVASPLLTDVFGVDSSRVEELAHQAANLK-GTLLRAEDVADAVAYLAGDES 249

Query: 61  KFVSGHNLIVDGGFTSAN 77
           K+VSG NL++DGG+T  N
Sbjct: 250 KYVSGLNLVIDGGYTRTN 266

[Close]

BLAST of CmoCh13G003710 vs. Swiss-Prot
Match: SDR2A_ARATH (Short-chain dehydrogenase reductase 2a OS=Arabidopsis thaliana GN=SDR2a PE=3 SV=1)

HSP 1 Score: 75.1 bits (183), Expect = 3.8e-13
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFK-----------LEDGDEFPNVYSHFKCGDILRAEDIAEA 60
           +RVNC+SP  V + M  + ++           +E+ +EF    ++ K G+ LRA DIAEA
Sbjct: 213 IRVNCISPFGVATSMLVNAWRKTSGGDVEDDDVEEMEEFVRSLANLK-GETLRANDIAEA 272

Query: 61  ALYLASDASKFVSGHNLIVDGGFTSA 76
           ALYLASD SK+V+GHNL+VDGG T+A
Sbjct: 273 ALYLASDESKYVNGHNLVVDGGVTTA 297

[Close]

BLAST of CmoCh13G003710 vs. Swiss-Prot
Match: SILD_FORIN (Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 6.6e-13
Identity = 36/80 (45.00%), Postives = 53/80 (66.25%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNV--YSHFKCGDILRAEDIAEAALYLASDAS 60
           +RVNC+SP  +P+ + +    +++ +EF NV  ++    G     ED+A AALYLASD +
Sbjct: 189 IRVNCLSPFGLPTALGKKFSGIKNEEEFENVINFAGNLKGPKFNVEDVANAALYLASDEA 248

Query: 61  KFVSGHNLIVDGGFTSANQV 79
           K+VSGHNL +DGGF+  N V
Sbjct: 249 KYVSGHNLFIDGGFSVCNSV 268

[Close]

BLAST of CmoCh13G003710 vs. Swiss-Prot
Match: ZERSY_ZINZE (Zerumbone synthase OS=Zingiber zerumbet GN=ZSD1 PE=1 SV=1)

HSP 1 Score: 63.5 bits (153), Expect = 1.2e-09
Identity = 34/84 (40.48%), Postives = 52/84 (61.90%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDE--------FPNVYSHFKCGDILRAEDIAEAALY 60
           +RVNCVSP+ VP++++       +  E        F    ++ K  D++   D+AEA LY
Sbjct: 178 IRVNCVSPYAVPTRLSMPYLPESEMQEDALRGFLTFVRSNANLKGVDLM-PNDVAEAVLY 237

Query: 61  LASDASKFVSGHNLIVDGGFTSAN 77
           LA++ SK+VSG NL++DGGF+ AN
Sbjct: 238 LATEESKYVSGLNLVIDGGFSIAN 260

[Close]

BLAST of CmoCh13G003710 vs. Swiss-Prot
Match: ABA2_ARATH (Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1)

HSP 1 Score: 59.3 bits (142), Expect = 2.2e-08
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDE--------FPNVYSHFKCGDILRAEDIAEAALY 60
           +RVNCVSP+ V +++       E+  E        F    ++ K G  L  +D+A A L+
Sbjct: 196 IRVNCVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLK-GVELTVDDVANAVLF 255

Query: 61  LASDASKFVSGHNLIVDGGFTSAN 77
           LASD S+++SG NL++DGGFT  N
Sbjct: 256 LASDDSRYISGDNLMIDGGFTCTN 278

[Close]

BLAST of CmoCh13G003710 vs. TrEMBL
Match: A0A0A0LT69_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168890 PE=4 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 1.3e-28
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSH-FKCGDILRAEDIAEAALYLASDASK 60
           ++VNCVSPHVVP+QMTR+ FKL+DGDEFP+VYSH FKCGDILR ED+AE  LYLASDAS+
Sbjct: 187 IKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASR 246

Query: 61  FVSGHNLIVDGGFTSANQ 78
           FVSGHN ++DGGFT+ NQ
Sbjct: 247 FVSGHNFVLDGGFTAGNQ 264

[Close]

BLAST of CmoCh13G003710 vs. TrEMBL
Match: Q94G10_CUCSA (CTA OS=Cucumis sativus GN=CTA PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP+VVP++M R LFK++DG EFP+ Y   K GDILR ED+ EA +YL SD SK 
Sbjct: 188 IRVNCVSPNVVPTEMGRKLFKVKDGGEFPSFYWSLKNGDILREEDVGEAVVYLGSDESKC 247

Query: 61  VSGHNLIVDGGFTSANQ 78
           VSG NLIVDGGFT  NQ
Sbjct: 248 VSGLNLIVDGGFTVVNQ 264

[Close]

BLAST of CmoCh13G003710 vs. TrEMBL
Match: Q94G09_CUCSA (TASSELSEED2-like protein OS=Cucumis sativus GN=CTS2 PE=2 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP+VVP++M R LFK++DG EFP+ Y   K GDILR ED+ EA +YL SD SK 
Sbjct: 188 IRVNCVSPNVVPTEMGRKLFKVKDGGEFPSFYWSLKNGDILREEDVGEAVVYLGSDESKC 247

Query: 61  VSGHNLIVDGGFTSANQ 78
           VSG NLIVDGGFT  NQ
Sbjct: 248 VSGLNLIVDGGFTVVNQ 264

[Close]

BLAST of CmoCh13G003710 vs. TrEMBL
Match: A0A0A0LVV9_CUCSA (TASSELSEED2-like protein OS=Cucumis sativus GN=Csa_1G168880 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.7e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP+VVP++M R LFK++DG EFP+ Y   K GDILR ED+ EA +YL SD SK 
Sbjct: 188 IRVNCVSPNVVPTEMGRKLFKVKDGGEFPSFYWSLKNGDILREEDVGEAVVYLGSDESKC 247

Query: 61  VSGHNLIVDGGFTSANQ 78
           VSG NLIVDGGFT  NQ
Sbjct: 248 VSGLNLIVDGGFTVVNQ 264

[Close]

BLAST of CmoCh13G003710 vs. TrEMBL
Match: M5W1I4_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017863mg PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 1.1e-17
Identity = 48/76 (63.16%), Postives = 60/76 (78.95%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP++V + + +D FKL+D D    VYS+ K G +L+AEDIAEAALYL SD SK+
Sbjct: 188 IRVNCVSPYIVATPLAKDFFKLDD-DGVHGVYSNLK-GGVLKAEDIAEAALYLGSDESKY 247

Query: 61  VSGHNLIVDGGFTSAN 77
           VSGHNL+VDGGFT  N
Sbjct: 248 VSGHNLLVDGGFTIVN 261

[Close]

BLAST of CmoCh13G003710 vs. TAIR10
Match: AT3G51680.1 (AT3G51680.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 75.1 bits (183), Expect = 2.2e-14
Identity = 41/86 (47.67%), Postives = 57/86 (66.28%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFK-----------LEDGDEFPNVYSHFKCGDILRAEDIAEA 60
           +RVNC+SP  V + M  + ++           +E+ +EF    ++ K G+ LRA DIAEA
Sbjct: 213 IRVNCISPFGVATSMLVNAWRKTSGGDVEDDDVEEMEEFVRSLANLK-GETLRANDIAEA 272

Query: 61  ALYLASDASKFVSGHNLIVDGGFTSA 76
           ALYLASD SK+V+GHNL+VDGG T+A
Sbjct: 273 ALYLASDESKYVNGHNLVVDGGVTTA 297

[Close]

BLAST of CmoCh13G003710 vs. TAIR10
Match: AT3G26760.1 (AT3G26760.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 64.7 bits (156), Expect = 2.9e-11
Identity = 35/82 (42.68%), Postives = 49/82 (59.76%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKL---------EDGDEFPNVYSHFKCGDILRAEDIAEAAL 60
           +R+NC+SP  +P+ +T  +F+          E      N     K G+     D+A+AAL
Sbjct: 210 LRINCISPAGIPTPLTLRMFREAFAGHSIREEQLLAIVNATGELK-GEKCEEIDVAKAAL 269

Query: 61  YLASDASKFVSGHNLIVDGGFT 74
           YLASD +KFV+GHNL+VDGGFT
Sbjct: 270 YLASDDAKFVTGHNLVVDGGFT 290

[Close]

BLAST of CmoCh13G003710 vs. TAIR10
Match: AT4G03140.1 (AT4G03140.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 63.2 bits (152), Expect = 8.5e-11
Identity = 33/80 (41.25%), Postives = 48/80 (60.00%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFK-----LEDGDEFPNVYSHFKC-GDILRAEDIAEAALYLA 60
           +RVNC+SP  + +    D  +     ++D      V S     G++    D+A AA+YLA
Sbjct: 251 IRVNCISPFAITTSFVMDEMRQIYPGVDDSRLIQIVQSTGVLNGEVCEPTDVANAAVYLA 310

Query: 61  SDASKFVSGHNLIVDGGFTS 75
           SD SK+V+GHNL+VDGGFT+
Sbjct: 311 SDDSKYVNGHNLVVDGGFTT 330

[Close]

BLAST of CmoCh13G003710 vs. TAIR10
Match: AT1G52340.1 (AT1G52340.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 59.3 bits (142), Expect = 1.2e-09
Identity = 33/84 (39.29%), Postives = 49/84 (58.33%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDE--------FPNVYSHFKCGDILRAEDIAEAALY 60
           +RVNCVSP+ V +++       E+  E        F    ++ K G  L  +D+A A L+
Sbjct: 196 IRVNCVSPYAVATKLALAHLPEEERTEDAFVGFRNFAAANANLK-GVELTVDDVANAVLF 255

Query: 61  LASDASKFVSGHNLIVDGGFTSAN 77
           LASD S+++SG NL++DGGFT  N
Sbjct: 256 LASDDSRYISGDNLMIDGGFTCTN 278

[Close]

BLAST of CmoCh13G003710 vs. TAIR10
Match: AT3G29250.1 (AT3G29250.1 NAD(P)-binding Rossmann-fold superfamily protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.7e-09
Identity = 33/75 (44.00%), Postives = 50/75 (66.67%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFK--LEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDAS 60
           +RVN V+P+ V + MT    +  ++  +E+     + K G +L+A  IAEAAL+LASD S
Sbjct: 218 IRVNGVAPYGVATGMTSAYNEEAVKMLEEYGEALGNLK-GVVLKARHIAEAALFLASDDS 277

Query: 61  KFVSGHNLIVDGGFT 74
            ++SG NL+VDGGF+
Sbjct: 278 VYISGQNLVVDGGFS 291

[Close]

BLAST of CmoCh13G003710 vs. NCBI nr
Match: gi|449443650|ref|XP_004139590.1| (PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus])

HSP 1 Score: 133.3 bits (334), Expect = 1.9e-28
Identity = 60/78 (76.92%), Postives = 71/78 (91.03%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSH-FKCGDILRAEDIAEAALYLASDASK 60
           ++VNCVSPHVVP+QMTR+ FKL+DGDEFP+VYSH FKCGDILR ED+AE  LYLASDAS+
Sbjct: 187 IKVNCVSPHVVPTQMTREHFKLKDGDEFPDVYSHNFKCGDILRKEDVAEVGLYLASDASR 246

Query: 61  FVSGHNLIVDGGFTSANQ 78
           FVSGHN ++DGGFT+ NQ
Sbjct: 247 FVSGHNFVLDGGFTAGNQ 264

[Close]

BLAST of CmoCh13G003710 vs. NCBI nr
Match: gi|15077028|gb|AAK83035.1|AF286650_1 (CTA [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP+VVP++M R LFK++DG EFP+ Y   K GDILR ED+ EA +YL SD SK 
Sbjct: 188 IRVNCVSPNVVPTEMGRKLFKVKDGGEFPSFYWSLKNGDILREEDVGEAVVYLGSDESKC 247

Query: 61  VSGHNLIVDGGFTSANQ 78
           VSG NLIVDGGFT  NQ
Sbjct: 248 VSGLNLIVDGGFTVVNQ 264

[Close]

BLAST of CmoCh13G003710 vs. NCBI nr
Match: gi|700209866|gb|KGN64962.1| (TASSELSEED2-like protein [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP+VVP++M R LFK++DG EFP+ Y   K GDILR ED+ EA +YL SD SK 
Sbjct: 188 IRVNCVSPNVVPTEMGRKLFKVKDGGEFPSFYWSLKNGDILREEDVGEAVVYLGSDESKC 247

Query: 61  VSGHNLIVDGGFTSANQ 78
           VSG NLIVDGGFT  NQ
Sbjct: 248 VSGLNLIVDGGFTVVNQ 264

[Close]

BLAST of CmoCh13G003710 vs. NCBI nr
Match: gi|821595256|ref|NP_001295763.1| (secoisolariciresinol dehydrogenase [Cucumis sativus])

HSP 1 Score: 106.3 bits (264), Expect = 2.5e-20
Identity = 51/77 (66.23%), Postives = 60/77 (77.92%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP+VVP++M R LFK++DG EFP+ Y   K GDILR ED+ EA +YL SD SK 
Sbjct: 188 IRVNCVSPNVVPTEMGRKLFKVKDGGEFPSFYWSLKNGDILREEDVGEAVVYLGSDESKC 247

Query: 61  VSGHNLIVDGGFTSANQ 78
           VSG NLIVDGGFT  NQ
Sbjct: 248 VSGLNLIVDGGFTVVNQ 264

[Close]

BLAST of CmoCh13G003710 vs. NCBI nr
Match: gi|645306387|ref|XP_008246119.1| (PREDICTED: secoisolariciresinol dehydrogenase-like, partial [Prunus mume])

HSP 1 Score: 99.4 bits (246), Expect = 3.0e-18
Identity = 48/76 (63.16%), Postives = 62/76 (81.58%), Query Frame = 1


Query: 1   MRVNCVSPHVVPSQMTRDLFKLEDGDEFPNVYSHFKCGDILRAEDIAEAALYLASDASKF 60
           +RVNCVSP++V + + +D FKL+D D    VYS+ K G++L+AEDIAEAALYL SD SK+
Sbjct: 175 IRVNCVSPYIVATPLAKDFFKLDD-DGVHGVYSNLK-GEVLKAEDIAEAALYLGSDESKY 234

Query: 61  VSGHNLIVDGGFTSAN 77
           VSGHNL+VDGGFT+ N
Sbjct: 235 VSGHNLLVDGGFTNVN 248

The following BLAST results are available for this feature:

BLAST of CmoCh13G003710 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SILD_PODPE	1.3e-13	47.44	Secoisolariciresinol dehydrogenase (Fragment) OS=Podophyllum peltatum PE=1 SV=1	[more]
SDR2A_ARATH	3.8e-13	47.67	Short-chain dehydrogenase reductase 2a OS=Arabidopsis thaliana GN=SDR2a PE=3 SV=...	[more]
SILD_FORIN	6.6e-13	45.00	Secoisolariciresinol dehydrogenase (Fragment) OS=Forsythia intermedia PE=1 SV=1	[more]
ZERSY_ZINZE	1.2e-09	40.48	Zerumbone synthase OS=Zingiber zerumbet GN=ZSD1 PE=1 SV=1	[more]
ABA2_ARATH	2.2e-08	39.29	Xanthoxin dehydrogenase OS=Arabidopsis thaliana GN=ABA2 PE=1 SV=1	[more]

BLAST of CmoCh13G003710 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LT69_CUCSA	1.3e-28	76.92	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G168890 PE=4 SV=1	[more]
Q94G10_CUCSA	1.7e-20	66.23	CTA OS=Cucumis sativus GN=CTA PE=2 SV=1	[more]
Q94G09_CUCSA	1.7e-20	66.23	TASSELSEED2-like protein OS=Cucumis sativus GN=CTS2 PE=2 SV=1	[more]
A0A0A0LVV9_CUCSA	1.7e-20	66.23	TASSELSEED2-like protein OS=Cucumis sativus GN=Csa_1G168880 PE=4 SV=1	[more]
M5W1I4_PRUPE	1.1e-17	63.16	Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa017863mg PE=4 SV=1	[more]

BLAST of CmoCh13G003710 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G51680.1	2.2e-14	47.67	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT3G26760.1	2.9e-11	42.68	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT4G03140.1	8.5e-11	41.25	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT1G52340.1	1.2e-09	39.29	NAD(P)-binding Rossmann-fold superfamily protein	[more]
AT3G29250.1	4.7e-09	44.00	NAD(P)-binding Rossmann-fold superfamily protein	[more]

BLAST of CmoCh13G003710 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|449443650\|ref\|XP_004139590.1\|	1.9e-28	76.92	PREDICTED: secoisolariciresinol dehydrogenase [Cucumis sativus]	[more]
gi\|15077028\|gb\|AAK83035.1\|AF286650_1	2.5e-20	66.23	CTA [Cucumis sativus]	[more]
gi\|700209866\|gb\|KGN64962.1\|	2.5e-20	66.23	TASSELSEED2-like protein [Cucumis sativus]	[more]
gi\|821595256\|ref\|NP_001295763.1\|	2.5e-20	66.23	secoisolariciresinol dehydrogenase [Cucumis sativus]	[more]
gi\|645306387\|ref\|XP_008246119.1\|	3.0e-18	63.16	PREDICTED: secoisolariciresinol dehydrogenase-like, partial [Prunus mume]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR016040	NAD(P)-bd_dom

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0016491	oxidoreductase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003710.1	CmoCh13G003710.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR016040	NAD(P)-binding domain	GENE3D	G3DSA:3.40.50.720		coord: 2..74 score: 3.3
IPR016040	NAD(P)-binding domain	unknown	SSF51735	NAD(P)-binding Rossmann-fold domains	coord: 2..73 score: 8.55
None	No IPR available	PANTHER	PTHR24321	FAMILY NOT NAMED	coord: 1..74 score: 6.4
None	No IPR available	PANTHER	PTHR24321:SF6	3-HYDROXYBUTYRATE DEHYDROGENASE TYPE 2	coord: 1..74 score: 6.4
None	No IPR available	PFAM	PF13561	adh_short_C2	coord: 1..73 score: 9.2

Synteny

The following gene(s) are orthologous to this gene:


Gene	Orthologue	Organism	Block
CmoCh13G003710	CsaV3_1G015140	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003710	Cla97C01G011310	Watermelon (97103) v2	cmowmbB192
CmoCh13G003710	Bhi08G000017	Wax gourd	cmowgoB0254
CmoCh13G003710	CsGy1G014810	Cucumber (Gy14) v2	cgybcmoB072

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003710	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003710	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003710	Melon (DHL92) v3.5.1	cmomeB182
CmoCh13G003710	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003710	Watermelon (97103) v1	cmowmB189
CmoCh13G003710	Cucurbita pepo (Zucchini)	cmocpeB180
CmoCh13G003710	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003710	Melon (DHL92) v3.6.1	cmomedB209
CmoCh13G003710	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003710	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003710	Cucurbita maxima (Rimu)	cmacmoB395