CmoCh13G003700 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003700
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Transposon Ty1-OR Gag-Pol polyprotein
Location	Cmo_Chr13 : 4721726 .. 4722346 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGGCATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTGTTAGTGATTATGATAAATTGCATGTGTTTGGGTGTCTTGCTTATTATCATGTGACAGACTCAAAGCTGGATCCTAGAGCAAAAAAAAGCCAAGTTTATGGGCTTTAGCAAAGGTGTGAAGGGCTATAGGTTATGGTGTCCAGAAACAGTAAGATTGTTAATAGTCGAGATGTGACATTCGATGAGTCTGAAATGTTTTTGCAGAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG

mRNA sequence

ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGGCATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG

Coding sequence (CDS)

ATGGGAGAGAACCAGACGGACAGGAAAATCAAAAAGTTGAGATCAGACAACGGGGGAGAATATACTTATGATTCATTCCTTAAAGTATGCCGAGATGAAGGGATCGTTCGACACTTCACTGTTCCTGGTAAACCACAACAAAATGGAGTTGCAGAGAGAATGAACCAGACATTAATAGAGAAGGTTCGACGCATATTGTCTCAAGTAGGATTGAGTAAGGCATTTTGTGCTGAGGCTCTCAGTTATGCAGTTCACTTGTTTAATCGTTTACCTGTTTCTAGAAATGGTGGGAGAACTTCGCTTGATGTATGGTCAGGTAGTCCTAAAATTGAAAATAATGACGAGGCATTGAAGCAGGTGGAGAAAGTGGTGTTCTCTCCTGATATGGTTGCTCCTATTGAAGAACCTATTGATTAG

Homology

[Close]

BLAST of CmoCh13G003700 vs. Swiss-Prot
Match: POLX_TOBAC (Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 2.0e-20
Identity = 49/89 (55.06%), Postives = 60/89 (67.42%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           E +T RK+K+LRSDNGGEYT   F + C   GI    TVPG PQ NGVAERMN+T++EKV
Sbjct: 537 ERETGRKLKRLRSDNGGEYTSREFEEYCSSHGIRHEKTVPGTPQHNGVAERMNRTIVEKV 596

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLP 92
           R +L    L K+F  EA+  A +L NR P
Sbjct: 597 RSMLRMAKLPKSFWGEAVQTACYLINRSP 625

[Close]

BLAST of CmoCh13G003700 vs. Swiss-Prot
Match: COPIA_DROME (Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3)

HSP 1 Score: 74.7 bits (182), Expect = 8.8e-13
Identity = 39/98 (39.80%), Postives = 56/98 (57.14%), Query Frame = 1


Query: 9   KIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKVRRILSQ 68
           K+  L  DNG EY  +   + C  +GI  H TVP  PQ NGV+ERM +T+ EK R ++S 
Sbjct: 543 KVVYLYIDNGREYLSNEMRQFCVKKGISYHLTVPHTPQLNGVSERMIRTITEKARTMVSG 602

Query: 69  VGLSKAFCAEALSYAVHLFNRLPVSR--NGGRTSLDVW 105
             L K+F  EA+  A +L NR+P     +  +T  ++W
Sbjct: 603 AKLDKSFWGEAVLTATYLINRIPSRALVDSSKTPYEMW 640

[Close]

BLAST of CmoCh13G003700 vs. Swiss-Prot
Match: YL21B_YEAST (Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-LR1 PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 35/122 (28.69%), Postives = 57/122 (46.72%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   
Sbjct: 719 KNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 778

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------GGRTSLDVWS----GSPKIE 114
           R +L   GL       A+ ++  + N L   +N        G   LD+ +    G P I 
Sbjct: 779 RTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIV 838

[Close]

BLAST of CmoCh13G003700 vs. Swiss-Prot
Match: YC21B_YEAST (Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-C PE=3 SV=2)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 35/122 (28.69%), Postives = 57/122 (46.72%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   
Sbjct: 719 KNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 778

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------GGRTSLDVWS----GSPKIE 114
           R +L   GL       A+ ++  + N L   +N        G   LD+ +    G P I 
Sbjct: 779 RTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIV 838

[Close]

BLAST of CmoCh13G003700 vs. Swiss-Prot
Match: YB21B_YEAST (Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=TY2B-B PE=3 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 1.6e-06
Identity = 35/122 (28.69%), Postives = 57/122 (46.72%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           +NQ + ++  ++ D G EYT  +  K   + GI   +T     + +GVAER+N+TL+   
Sbjct: 719 KNQFNARVLVIQMDRGSEYTNKTLHKFFTNRGITACYTTTADSRAHGVAERLNRTLLNDC 778

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRN-------GGRTSLDVWS----GSPKIE 114
           R +L   GL       A+ ++  + N L   +N        G   LD+ +    G P I 
Sbjct: 779 RTLLHCSGLPNHLWFSAVEFSTIIRNSLVSPKNDKSARQHAGLAGLDITTILPFGQPVIV 838

[Close]

BLAST of CmoCh13G003700 vs. TrEMBL
Match: A0A151RYL1_CAJCA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanus cajan GN=KK1_030746 PE=4 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 1.4e-30
Identity = 69/106 (65.09%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           E QT RKIK  R+DNGGEYT D F K C + GIVRHFTV   PQQNGVAERMN+TL+EKV
Sbjct: 321 ETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAERMNRTLLEKV 380

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           R +LS  GL K F AEA+ YA HL NRLP S  GG+T L+ W G P
Sbjct: 381 RCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKP 426

[Close]

BLAST of CmoCh13G003700 vs. TrEMBL
Match: G8DCX4_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.9e-30
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           ENQT RKIK LR+DNGGEY  D FLKVC+D GI+RHFT+   PQQNGV+ERMN+ L+EKV
Sbjct: 526 ENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIRKTPQQNGVSERMNKILVEKV 585

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           R +LS   L + F AEA++YA HL NRLP S   G+T L+VWSG P
Sbjct: 586 RCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKP 631

[Close]

BLAST of CmoCh13G003700 vs. TrEMBL
Match: A0A068VDJ5_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010516001 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 1.6e-29
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           ENQT RKIK LR+DNGGEY  D F K+C++ GIVRHF V   PQQNGV+E MN+TL+EKV
Sbjct: 558 ENQTGRKIKILRTDNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEKV 617

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSPKIENNDEALKQVEK 122
           R +LS  GL + F AEA++YA HL NRLP S  GG+T L+VWSG  K+  + ++L+  + 
Sbjct: 618 RCMLSNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSG--KLATDYDSLRIFDS 677

Query: 123 VVF 126
             +
Sbjct: 678 TAY 678

[Close]

BLAST of CmoCh13G003700 vs. TrEMBL
Match: A0A077SK66_PHAVU (Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 8.0e-29
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           EN T RKIK L++DNGGEY  D FL VC+D GIVRHFTV   PQQNGV+ERMN+TL+EKV
Sbjct: 472 ENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKV 531

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
             +LS   L + F AEA++YA HL NRLP S   G+T L+VWSG P
Sbjct: 532 CCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKP 577

[Close]

BLAST of CmoCh13G003700 vs. TrEMBL
Match: A0A068VB18_COFCA (Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010517001 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 6.7e-28
Identity = 65/106 (61.32%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           ENQT RKIK LR+DNGGEY  D F K+ ++ GIV+HFTV   PQQNGV+ERMN+TL+EKV
Sbjct: 166 ENQTGRKIKILRTDNGGEYKSDPFQKIGQECGIVQHFTVRKTPQQNGVSERMNKTLVEKV 225

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
             +LS   L + F AE ++YA HL NRLP S  GG+T L+VWSG P
Sbjct: 226 HCMLSNARLGRKFWAETVTYAQHLVNRLPSSAIGGKTPLEVWSGKP 271

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: gi|1012336336|gb|KYP47640.1| (Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus cajan])

HSP 1 Score: 140.6 bits (353), Expect = 2.1e-30
Identity = 69/106 (65.09%), Postives = 77/106 (72.64%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           E QT RKIK  R+DNGGEYT D F K C + GIVRHFTV   PQQNGVAERMN+TL+EKV
Sbjct: 321 ETQTGRKIKHFRTDNGGEYTSDPFKKACEESGIVRHFTVKHTPQQNGVAERMNRTLLEKV 380

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           R +LS  GL K F AEA+ YA HL NRLP S  GG+T L+ W G P
Sbjct: 381 RCMLSNAGLGKQFWAEAVVYASHLINRLPSSAIGGKTPLEKWFGKP 426

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: gi|657965254|ref|XP_008374274.1| (PREDICTED: lysosomal alpha-mannosidase-like [Malus domestica])

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-30
Identity = 68/108 (62.96%), Postives = 81/108 (75.00%), Query Frame = 1


Query: 1   MGENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIE 60
           M ENQT RKIK LR DNGGEYT D F KV   EGIVRHF+V G PQQNGVA+R+N TL+E
Sbjct: 1   MVENQTGRKIKILRXDNGGEYTXDXFFKVXXXEGIVRHFSVRGTPQQNGVAZRLNXTLLE 60

Query: 61  KVRRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           KVR +LSQ  LSK+F  EA++YA H+ NRLP +   G+T ++VW G P
Sbjct: 61  KVRCMLSQSXLSKSFWXEAVNYACHIINRLPSAAXQGKTPMEVWXGKP 108

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: gi|353685482|gb|AER13159.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 140.2 bits (352), Expect = 2.7e-30
Identity = 68/106 (64.15%), Postives = 81/106 (76.42%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           ENQT RKIK LR+DNGGEY  D FLKVC+D GI+RHFT+   PQQNGV+ERMN+ L+EKV
Sbjct: 526 ENQTGRKIKVLRTDNGGEYKSDPFLKVCQDCGIIRHFTIRKTPQQNGVSERMNKILVEKV 585

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
           R +LS   L + F AEA++YA HL NRLP S   G+T L+VWSG P
Sbjct: 586 RCMLSNAELGRKFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKP 631

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: gi|661878516|emb|CDP17738.1| (unnamed protein product [Coffea canephora])

HSP 1 Score: 137.1 bits (344), Expect = 2.3e-29
Identity = 69/123 (56.10%), Postives = 89/123 (72.36%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           ENQT RKIK LR+DNGGEY  D F K+C++ GIVRHF V   PQQNGV+E MN+TL+EKV
Sbjct: 558 ENQTGRKIKILRTDNGGEYKSDPFQKICQECGIVRHFIVRKIPQQNGVSEHMNKTLVEKV 617

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSPKIENNDEALKQVEK 122
           R +LS  GL + F AEA++YA HL NRLP S  GG+T L+VWSG  K+  + ++L+  + 
Sbjct: 618 RCMLSNAGLGRKFWAEAVTYAQHLVNRLPSSAIGGKTPLEVWSG--KLATDYDSLRIFDS 677

Query: 123 VVF 126
             +
Sbjct: 678 TAY 678

[Close]

BLAST of CmoCh13G003700 vs. NCBI nr
Match: gi|670449696|emb|CDN96898.1| (putative Ty-1 copia retrotransposon [Phaseolus vulgaris])

HSP 1 Score: 134.8 bits (338), Expect = 1.1e-28
Identity = 67/106 (63.21%), Postives = 79/106 (74.53%), Query Frame = 1


Query: 3   ENQTDRKIKKLRSDNGGEYTYDSFLKVCRDEGIVRHFTVPGKPQQNGVAERMNQTLIEKV 62
           EN T RKIK L++DNGGEY  D FL VC+D GIVRHFTV   PQQNGV+ERMN+TL+EKV
Sbjct: 472 ENHTGRKIKVLQTDNGGEYKSDPFLNVCQDCGIVRHFTVRKTPQQNGVSERMNKTLVEKV 531

Query: 63  RRILSQVGLSKAFCAEALSYAVHLFNRLPVSRNGGRTSLDVWSGSP 109
             +LS   L + F AEA++YA HL NRLP S   G+T L+VWSG P
Sbjct: 532 CCMLSNAELGREFWAEAVTYAQHLVNRLPSSAIDGKTPLEVWSGKP 577

The following BLAST results are available for this feature:

BLAST of CmoCh13G003700 vs. Swiss-Prot


Match Name	E-value	Identity	Description
POLX_TOBAC	2.0e-20	55.06	Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum...	[more]
COPIA_DROME	8.8e-13	39.80	Copia protein OS=Drosophila melanogaster GN=GIP PE=1 SV=3	[more]
YL21B_YEAST	1.6e-06	28.69	Transposon Ty2-LR1 Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC ...	[more]
YC21B_YEAST	1.6e-06	28.69	Transposon Ty2-C Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]
YB21B_YEAST	1.6e-06	28.69	Transposon Ty2-B Gag-Pol polyprotein OS=Saccharomyces cerevisiae (strain ATCC 20...	[more]

BLAST of CmoCh13G003700 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A151RYL1_CAJCA	1.4e-30	65.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) OS=Cajanu...	[more]
G8DCX4_PHAVU	1.9e-30	64.15	Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1	[more]
A0A068VDJ5_COFCA	1.6e-29	56.10	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010516001 PE=4 SV=1	[more]
A0A077SK66_PHAVU	8.0e-29	63.21	Putative Ty-1 copia retrotransposon OS=Phaseolus vulgaris PE=4 SV=1	[more]
A0A068VB18_COFCA	6.7e-28	61.32	Uncharacterized protein OS=Coffea canephora GN=GSCOC_T00010517001 PE=4 SV=1	[more]

BLAST of CmoCh13G003700 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh13G003700 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012336336\|gb\|KYP47640.1\|	2.1e-30	65.09	Retrovirus-related Pol polyprotein from transposon TNT 1-94, partial [Cajanus ca...	[more]
gi\|657965254\|ref\|XP_008374274.1\|	2.7e-30	62.96	PREDICTED: lysosomal alpha-mannosidase-like [Malus domestica]	[more]
gi\|353685482\|gb\|AER13159.1\|	2.7e-30	64.15	putative Ty-1 copia retrotransposon [Phaseolus vulgaris]	[more]
gi\|661878516\|emb\|CDP17738.1\|	2.3e-29	56.10	unnamed protein product [Coffea canephora]	[more]
gi\|670449696\|emb\|CDN96898.1\|	1.1e-28	63.21	putative Ty-1 copia retrotransposon [Phaseolus vulgaris]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR001584	Integrase_cat-core
IPR012337	RNaseH-like_sf

Vocabulary: **Biological Process**
Term	Definition
GO:0015074	DNA integration

Vocabulary: **Molecular Function**
Term	Definition
GO:0003676	nucleic acid binding

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0015074	DNA integration
biological_process	GO:0006310	DNA recombination
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003676	nucleic acid binding

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003700.1	CmoCh13G003700.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001584	Integrase, catalytic core	PFAM	PF00665	rve	coord: 5..59 score: 5.1
IPR001584	Integrase, catalytic core	PROFILE	PS50994	INTEGRASE	coord: 1..108 score: 16
IPR012337	Ribonuclease H-like domain	GENE3D	G3DSA:3.30.420.10		coord: 9..98 score: 1.3
IPR012337	Ribonuclease H-like domain	unknown	SSF53098	Ribonuclease H-like	coord: 8..107 score: 3.41
None	No IPR available	PANTHER	PTHR11439	GAG-POL-RELATED RETROTRANSPOSON	coord: 3..108 score: 2.9
None	No IPR available	PANTHER	PTHR11439:SF192	SUBFAMILY NOT NAMED	coord: 3..108 score: 2.9

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003700	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003700	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003700	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003700	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003700	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003700	Melon (DHL92) v3.5.1	cmomeB182
CmoCh13G003700	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003700	Watermelon (97103) v1	cmowmB189
CmoCh13G003700	Cucurbita pepo (Zucchini)	cmocpeB180
CmoCh13G003700	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003700	Cucumber (Gy14) v2	cgybcmoB072
CmoCh13G003700	Melon (DHL92) v3.6.1	cmomedB209
CmoCh13G003700	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003700	Watermelon (97103) v2	cmowmbB192