CmoCh13G003570 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003570
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Subtilisin-like protease
Location	Cmo_Chr13 : 4585035 .. 4585277 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAATTTCAATGACCCTGGTTCTGGTTCTATTTTAAACTTTAATTACCCTTCCATTGCAGAACTTAATTGGCAGTGTCACCCTTACTAGAAGGCTGAAGAATGTTGGCAGGCCGGGGGTTTATAGAGTCAGAGTTCGGCAGCCGGAAGGAGTTAAGGTTTCAGTGAAGCCAAGCGTTCTGAAGTTTTGGAAGATCGGAAAGGAGAAGAGGTTTGAATTGAGGATGACCGGAGCACTGCTG

mRNA sequence

ATGGCAATTTCAATGACCCTGGTTCTGAACTTAATTGGCAGTGTCACCCTTACTAGAAGGCTGAAGAATGTTGGCAGGCCGGGGGTTTATAGAGTCAGAGTTCGGCAGCCGGAAGGAGTTAAGGTTTCAGTGAAGCCAAGCGTTCTGAAGTTTTGGAAGATCGGAAAGGAGAAGAGGTTTGAATTGAGGATGACCGGAGCACTGCTG

Coding sequence (CDS)

ATGGCAATTTCAATGACCCTGGTTCTGAACTTAATTGGCAGTGTCACCCTTACTAGAAGGCTGAAGAATGTTGGCAGGCCGGGGGTTTATAGAGTCAGAGTTCGGCAGCCGGAAGGAGTTAAGGTTTCAGTGAAGCCAAGCGTTCTGAAGTTTTGGAAGATCGGAAAGGAGAAGAGGTTTGAATTGAGGATGACCGGAGCACTGCTG

Homology

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BLAST of CmoCh13G003570 vs. Swiss-Prot
Match: SBT54_ARATH (Subtilisin-like protease SBT5.4 OS=Arabidopsis thaliana GN=SBT5.4 PE=1 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 8.6e-09
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GS+T+TR+LKNVG P  Y  R R+P GV+VSV+P  L F K G+ K F++ +
Sbjct: 688 VPNLTGSITVTRKLKNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEVKIFQMTL 744

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BLAST of CmoCh13G003570 vs. Swiss-Prot
Match: AIR3_ARATH (Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1)

HSP 1 Score: 57.4 bits (137), Expect = 7.2e-08
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 8   VLNLIGS-VTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFEL 63
           V NL  S VT++R +KNVGRP +Y V+V  P+GV V+VKP+ L F K+G++K F++
Sbjct: 682 VPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGEQKTFKV 737

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BLAST of CmoCh13G003570 vs. TrEMBL
Match: A0A0A0LVY8_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171040 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.9e-13
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRMTG 67
           V NL GSVT+TR+LKNV  PGVY+ RVR P GVKV VKP VLKF ++G+EK FEL +TG
Sbjct: 667 VQNLTGSVTVTRKLKNVSTPGVYKGRVRHPNGVKVLVKPKVLKFERVGEEKSFELTITG 725

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BLAST of CmoCh13G003570 vs. TrEMBL
Match: G7J840_MEDTR (Subtilisin-like serine protease OS=Medicago truncatula GN=MTR_3g082200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GSVT+TR LKNVG PG Y V V+ P G+ +SVKP++L+F K+G+EKRFE+++
Sbjct: 682 VPNLSGSVTVTRTLKNVGAPGTYIVHVQSPSGITISVKPNILEFKKVGEEKRFEVKL 738

[Close]

BLAST of CmoCh13G003570 vs. TrEMBL
Match: A0A072V0H9_MEDTR (Subtilisin-like serine protease OS=Medicago truncatula GN=MTR_3g082200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GSVT+TR LKNVG PG Y V V+ P G+ +SVKP++L+F K+G+EKRFE+++
Sbjct: 559 VPNLSGSVTVTRTLKNVGAPGTYIVHVQSPSGITISVKPNILEFKKVGEEKRFEVKL 615

[Close]

BLAST of CmoCh13G003570 vs. TrEMBL
Match: A0A072VAJ3_MEDTR (Subtilisin-like serine protease OS=Medicago truncatula GN=MTR_3g082200 PE=4 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 1.1e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GSVT+TR LKNVG PG Y V V+ P G+ +SVKP++L+F K+G+EKRFE+++
Sbjct: 544 VPNLSGSVTVTRTLKNVGAPGTYIVHVQSPSGITISVKPNILEFKKVGEEKRFEVKL 600

[Close]

BLAST of CmoCh13G003570 vs. TrEMBL
Match: F6HJU6_VITVI (Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s0878g00010 PE=4 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.4e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GSVTLTRR+KNVG PG+Y   + QP GV V+V+PS+LKF +IG+EK+F++ +
Sbjct: 483 VPNLSGSVTLTRRVKNVGFPGIYAAHISQPTGVSVTVEPSILKFSRIGEEKKFKVTL 539

[Close]

BLAST of CmoCh13G003570 vs. TAIR10
Match: AT5G59810.1 (AT5G59810.1 Subtilase family protein)

HSP 1 Score: 60.5 bits (145), Expect = 4.8e-10
Identity = 30/57 (52.63%), Postives = 40/57 (70.18%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GS+T+TR+LKNVG P  Y  R R+P GV+VSV+P  L F K G+ K F++ +
Sbjct: 688 VPNLTGSITVTRKLKNVGPPATYNARFREPLGVRVSVEPKQLTFNKTGEVKIFQMTL 744

[Close]

BLAST of CmoCh13G003570 vs. TAIR10
Match: AT2G04160.1 (AT2G04160.1 Subtilisin-like serine endopeptidase family protein)

HSP 1 Score: 57.4 bits (137), Expect = 4.1e-09
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 1


Query: 8   VLNLIGS-VTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFEL 63
           V NL  S VT++R +KNVGRP +Y V+V  P+GV V+VKP+ L F K+G++K F++
Sbjct: 682 VPNLTSSKVTVSRTVKNVGRPSMYTVKVNNPQGVYVAVKPTSLNFTKVGEQKTFKV 737

[Close]

BLAST of CmoCh13G003570 vs. NCBI nr
Match: gi|659128687|ref|XP_008464322.1| (PREDICTED: subtilisin-like protease [Cucumis melo])

HSP 1 Score: 82.0 bits (201), Expect = 4.4e-13
Identity = 41/59 (69.49%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRMTG 67
           V NL GSVTLTR+LKNV  PGVY+ RV  P GVKV VKP VLKF ++G+EKRFEL +TG
Sbjct: 686 VQNLTGSVTLTRKLKNVSTPGVYKARVMHPNGVKVLVKPKVLKFERVGEEKRFELIITG 744

[Close]

BLAST of CmoCh13G003570 vs. NCBI nr
Match: gi|449443664|ref|XP_004139597.1| (PREDICTED: subtilisin-like protease SBT5.4 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRMTG 67
           V NL GSVT+TR+LKNV  PGVY+ RVR P GVKV VKP VLKF ++G+EK FEL +TG
Sbjct: 661 VQNLTGSVTVTRKLKNVSTPGVYKGRVRHPNGVKVLVKPKVLKFERVGEEKSFELTITG 719

[Close]

BLAST of CmoCh13G003570 vs. NCBI nr
Match: gi|700209886|gb|KGN64982.1| (hypothetical protein Csa_1G171040 [Cucumis sativus])

HSP 1 Score: 80.5 bits (197), Expect = 1.3e-12
Identity = 40/59 (67.80%), Postives = 47/59 (79.66%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRMTG 67
           V NL GSVT+TR+LKNV  PGVY+ RVR P GVKV VKP VLKF ++G+EK FEL +TG
Sbjct: 667 VQNLTGSVTVTRKLKNVSTPGVYKGRVRHPNGVKVLVKPKVLKFERVGEEKSFELTITG 725

[Close]

BLAST of CmoCh13G003570 vs. NCBI nr
Match: gi|659128619|ref|XP_008464289.1| (PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Cucumis melo])

HSP 1 Score: 74.3 bits (181), Expect = 9.2e-11
Identity = 36/61 (59.02%), Postives = 46/61 (75.41%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRMTGA 67
           V NL GSV++TR+LKNVG PGVYR ++  P GV VSVKP  LKF ++G+EK FEL + G 
Sbjct: 684 VQNLKGSVSVTRKLKNVGSPGVYRAQILHPNGVVVSVKPRFLKFERVGEEKSFELTLAGV 743

Query: 68  L 69
           +
Sbjct: 744 V 744

[Close]

BLAST of CmoCh13G003570 vs. NCBI nr
Match: gi|922381906|ref|XP_013461181.1| (subtilisin-like serine protease [Medicago truncatula])

HSP 1 Score: 73.6 bits (179), Expect = 1.6e-10
Identity = 34/57 (59.65%), Postives = 46/57 (80.70%), Query Frame = 1


Query: 8   VLNLIGSVTLTRRLKNVGRPGVYRVRVRQPEGVKVSVKPSVLKFWKIGKEKRFELRM 65
           V NL GSVT+TR LKNVG PG Y V V+ P G+ +SVKP++L+F K+G+EKRFE+++
Sbjct: 544 VPNLSGSVTVTRTLKNVGAPGTYIVHVQSPSGITISVKPNILEFKKVGEEKRFEVKL 600

The following BLAST results are available for this feature:

BLAST of CmoCh13G003570 vs. Swiss-Prot


Match Name	E-value	Identity	Description
SBT54_ARATH	8.6e-09	52.63	Subtilisin-like protease SBT5.4 OS=Arabidopsis thaliana GN=SBT5.4 PE=1 SV=1	[more]
AIR3_ARATH	7.2e-08	51.79	Subtilisin-like protease SBT5.3 OS=Arabidopsis thaliana GN=AIR3 PE=2 SV=1	[more]

BLAST of CmoCh13G003570 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVY8_CUCSA	8.9e-13	67.80	Uncharacterized protein OS=Cucumis sativus GN=Csa_1G171040 PE=4 SV=1	[more]
G7J840_MEDTR	1.1e-10	59.65	Subtilisin-like serine protease OS=Medicago truncatula GN=MTR_3g082200 PE=4 SV=1	[more]
A0A072V0H9_MEDTR	1.1e-10	59.65	Subtilisin-like serine protease OS=Medicago truncatula GN=MTR_3g082200 PE=4 SV=1	[more]
A0A072VAJ3_MEDTR	1.1e-10	59.65	Subtilisin-like serine protease OS=Medicago truncatula GN=MTR_3g082200 PE=4 SV=1	[more]
F6HJU6_VITVI	2.4e-10	59.65	Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VIT_00s0878g000...	[more]

BLAST of CmoCh13G003570 vs. TAIR10


Match Name	E-value	Identity	Description
AT5G59810.1	4.8e-10	52.63	Subtilase family protein	[more]
AT2G04160.1	4.1e-09	51.79	Subtilisin-like serine endopeptidase family protein	[more]

BLAST of CmoCh13G003570 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|659128687\|ref\|XP_008464322.1\|	4.4e-13	69.49	PREDICTED: subtilisin-like protease [Cucumis melo]	[more]
gi\|449443664\|ref\|XP_004139597.1\|	1.3e-12	67.80	PREDICTED: subtilisin-like protease SBT5.4 [Cucumis sativus]	[more]
gi\|700209886\|gb\|KGN64982.1\|	1.3e-12	67.80	hypothetical protein Csa_1G171040 [Cucumis sativus]	[more]
gi\|659128619\|ref\|XP_008464289.1\|	9.2e-11	59.02	PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Cucumis melo]	[more]
gi\|922381906\|ref\|XP_013461181.1\|	1.6e-10	59.65	subtilisin-like serine protease [Medicago truncatula]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR015500	Peptidase_S8_subtilisin-rel

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0019761	glucosinolate biosynthetic process
biological_process	GO:0006508	proteolysis
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0004252	serine-type endopeptidase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003570.1	CmoCh13G003570.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR015500	Peptidase S8, subtilisin-related	PANTHER	PTHR10795	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	coord: 8..65 score: 9.7
None	No IPR available	PANTHER	PTHR10795:SF3	SUBFAMILY NOT NAMED	coord: 8..65 score: 9.7

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003570	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003570	Watermelon (97103) v2	cmowmbB192
CmoCh13G003570	Wax gourd	cmowgoB0270
CmoCh13G003570	Cucurbita moschata (Rifu)	cmocmoB167
CmoCh13G003570	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003570	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003570	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003570	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003570	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003570	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003570	Watermelon (97103) v1	cmowmB189
CmoCh13G003570	Cucurbita pepo (Zucchini)	cmocpeB180
CmoCh13G003570	Cucurbita pepo (Zucchini)	cmocpeB204
CmoCh13G003570	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003570	Cucumber (Gy14) v2	cgybcmoB072