CmoCh13G003450 (gene) Cucurbita moschata (Rifu)
The following sequences are available for this feature:
Legend: five_prime_UTRexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.ATGCTAGTAGTTCTGCTTCAGATTAGCTCTTCATGTAAGTTACTAGTCAGTTTATCTGTTGTGTTTGAATTGTGTAAATTACATGAGTGTTGCTTGTATGCCTTAGGCTTCCGCCGTATGTATGCATGCGTTATTTTATGTGTAGAATTGAGTATGCCGGGTTTCGGGGGTTTGATGGACGAATTCGCCCCATTGAGCGCGAACTTCGTGCTCTGGGTGCTTGATGGAGGTCATCGCCCCGCTGAGCCGGTATGCCTAGTTTGCATGAATTACATACTATGATGTAGAAGAAGATTACATGCACCCTCTGTTAATTGCTAGGGCCCATTTCCTTGATAAGATTAGGGAATCTTGGATAGGAGCGAAATGCCGCTCCAGCCTGACTTAATCTTTCCCTAGGAACTTAGTGGTTTACCACGGTAAGAAGGTACCCCGGAGCGTTCATAGATTGCTAGCGTGTGAACGGTATCTATAGCTTCGTGGGAGGACCAAGGGGTCCCTGATCAGTCCTTACTGCTCTTAGCCATTTCGCATGGGAAATGTGTCCCCACGTCGTACAGCCCATTAGCTACATGGGAACGGGTTGGGTCGCGCCCCCCATAGAGGGACTAGATGGGCGTAGGGGTACTCAGCACACCCCTAGGCCAGGTACCATGTAGTCCCAGATAGCCATGTGGAGGTAGCACCTCATAGAGAGATACCGACCATATTAGCTTGGCATAAAGAACCTCTGGGCGTTTAATGAGAGAACGAAAAATCAGTGAAACCCAAGGGGCAAGCCCCAAGGGACCTAGATTGGAGCCAGTCGCCCTAGAACCGAAATAGGAAACCGTGGCAACCTATTAAATTAAGATGCGAAAAGAGCCTACAAGTAGGTGGCTTACTGAGTATAATTTTTATACTCATCCTTGCTATGTTTTCCTTGTTTTTTTTCAGGAGCGTGAGGCGTAGGTCAAGAGTGGGCGTGATCTGAAGGGAATTGTCACAGAGGAATGGGTTGTCCCGGGGCGTCAGTCCAGTCTTAGTCTTTATTTTTGTATTCGCATTCCTTTTAAATTTATTTTCCAAACGGTCTTGTGTTCTGTGTTTATCGTTCGAAAAACTTTATTGAAATTTGATGATTTTTGGCTACTTCATATTTAAATCTCTCGTGCGTCTGTGTCGTGTCGTTAGTCACTGTCCGTAGTAAAATATTGGGCTGTGACAAATTTGGTATCAGAGCCATCAGGTTATAGGTCCTGTAGACATTTAGGGTAGAGAGTCGTGTCCTCTGTGACTTCGCTCGTCAATCACATGCCGCTCACGACCAGACGTTCTCACGCGACGGAAACATGGAGACAAAGGTTAAGTTAGTATTTATAAAGCATACCATGACTGACTAGGGCATTATATCGCACATTACCTAGGAGATGTGTTGTGAATGAATTGTGACCCTAGTTTTTTGTTATCCTGGTAGATAATGGCACCAAAGAGACGCGAACCGTATGTAGGGCCAGGACCTAGAAGGGGAAGAAGAGAGGAAGTTCAGGACACCTCGGTTGCAACACCTGAAGAGGAACAACCTGAACTTCAGGAGGAGGTTGGGGATATGCCCCAAACTAGCGAGGGGACAGTACCACAGCCATCAAGGTCAAAAAGACGCCGAATGAAGGCCAAGGCCCGAAGGCGGCTCGAGACACCCCCTACTACTCCCTTCTCCGAGGAGGCCCCATCGGATCCAACCCCGTGTACAGCAGTCCCACTAAACCAGCCATTAGCCATGCCCTCAGCGGAGATGTTTCAGACGTTCATGATGACGTCGATGGAAAATCAGGCTCTGACGAACCAGATGATTCAGACCATGATGTCTAATCAGTCAACAGGGCAAGGGGGCAAGGATTCAGGGACTATGACTGTGGAGTCCCGCTACTTGAGAGATTTCCAAAGGCATAAACCGCCTTCCTTTGACGGAGGCAAGATGGATCCTATCGCCGCTGAGAATTGGCTAGAGGCCATAGAAACGGCTTTTCATTTTATGAACTGCCCACCAAAGTATGAAGTCCATTGTGGGACATATATGCTGAAAGGAGAAGCGCACTTCTGGTGGAAAGGTGCTCAGAAAACCATAGTACCACAAGGAGAGTTTATTACATGGTGTCAGTTTAAAGACGCATACCTCCACAAATACTACCCAATCACTGCCAGAGTGAAAATGCAGGCCGAGTTCCTCGCATTGAAACAGGGAGACAGATCAGTGGGGGATTATGACTTGGAGTTCAATAGGCTGGCAAGGTTTTCTCCAGCCTATGTTAGTTCTGAGGAGTTTAAGGGCGAACGATTTATCGCTGGCCTGAGGGAAGAACTAAGGGGGAATGTGGCATCCCAGTCATCCTTTGTCTATACGAAAGCCCTTCAGGTGGCGACCCTGCTCGACTCGCCCCGTACTGACAAGCTTCAGTTGGGAATAGCACAATCATCCCACACTGCGGCCCAGGGAAAGGGGGCATACCCTAGCCACCCCAGAACTGGCAGACCACCCCGTGGCCGCACTGATTGGCGAGGGAGAGCCCCGGTACGGAACATGACTTTGTGCCCTTATTGTCGGCGTCTTCACACGGGGGAATGCAGAGCAGGAACAGGCGCCTGCTACAGATGCGGTCAGGTAGGGCACTTTGCAGTGGATTGCCCTCAGAGAAACGATCAGCGTGTCAACCTGCCTGCAGTACAGCATCAGAGGGGCCAAGCCGGCCAACATCAGCAGGGGCGAGCTGTAGCCCATGCAACAACAGCCAGGCAAGCTGACCCGCCTGACGCGGTTGTCACAGGTACGCTACCCGTATTTGGGCATCTTGCATTAGTGTTGTTTGATTCGGGTTCGACGCATTCATTCGTATCTGAAGAGTTTGTAGAGCTAGCACAGCTAGAGAAAGAACTTTTAGAGAGTACCCTATCAGTGTCTACCCCTGCGCACAAGTTGTTGCTAGCTACCCATAGGGTTAAGGGAGGTGGAGTAACAATAGCAGGGCGTGTCATCGAAGCTACACTGATAGTGTTAAGTATGCAAGACTTCGATGTCATCTTGGGTATGGATTGGCTAGGCGAGAATCGCGTCTTGATAGACTGCGAGACCCGAATAGTGACTCTCAGGCTCCCGTCAGGGGACAGCTTTACCTACAAGGGAGCCACTTCCAAAGGTGTCCCGAGCGTCATAACCTCGCTAAGGGCTAAGAAGTTGATTCGTAGTGGCGCAATTGCATTCCTAGCCGGCGTGACCTTAGATAATAGTAACAAACAAAAACCCTCATCGGTACACATCGTCAGGGAGTTCGTAGATGTCTTTCCGGAGGATCTGTCGGGTTTGCCCCCAGCTAAGGAAGTCAATTTTGGGATCGATTTAGAACCAGGAACGGTGCCGATCTCCAAGGCACCTTACAGGATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTATAG ATGCTAGTAGTTCTGCTTCAGATTAGCTCTTCATAATTGAGTATGCCGGGTTTCGGGGGTTTGATGGACGAATTCGCCCCATTGAGCGCGAACTTCGTGCTCTGGGTGCTTGATGGAGGTCATCGCCCCGCTGAGCCGATAATGGCACCAAAGAGACGCGAACCGTATGTAGGGCCAGGACCTAGAAGGGGAAGAAGAGAGGAAGTTCAGGACACCTCGGTTGCAACACCTGAAGAGGAACAACCTGAACTTCAGGAGGAGGTTGGGGATATGCCCCAAACTAGCGAGGGGACAGTACCACAGCCATCAAGGTCAAAAAGACGCCGAATGAAGGCCAAGGCCCGAAGGCGGCTCGAGACACCCCCTACTACTCCCTTCTCCGAGGAGGCCCCATCGGATCCAACCCCGTGTACAGCAGTCCCACTAAACCAGCCATTAGCCATGCCCTCAGCGGAGATGTTTCAGACGTTCATGATGACGTCGATGGAAAATCAGGCTCTGACGAACCAGATGATTCAGACCATGATGTCTAATCAGTCAACAGGGCAAGGGGGCAAGGATTCAGGGACTATGACTGTGGAGTCCCGCTACTTGAGAGATTTCCAAAGGCATAAACCGCCTTCCTTTGACGGAGGCAAGATGGATCCTATCGCCGCTGAGAATTGGCTAGAGGCCATAGAAACGGCTTTTCATTTTATGAACTGCCCACCAAAGTATGAAGTCCATTGTGGGACATATATGCTGAAAGGAGAAGCGCACTTCTGGTGGAAAGGTGCTCAGAAAACCATAGTACCACAAGGAGAGTTTATTACATGGTGTCAGTTTAAAGACGCATACCTCCACAAATACTACCCAATCACTGCCAGAGTGAAAATGCAGGCCGAGTTCCTCGCATTGAAACAGGGAGACAGATCAGTGGGGGATTATGACTTGGAGTTCAATAGGCTGGCAAGGTTTTCTCCAGCCTATGTTAGTTCTGAGGAGTTTAAGGGCGAACGATTTATCGCTGGCCTGAGGGAAGAACTAAGGGGGAATGTGGCATCCCAGTCATCCTTTGTCTATACGAAAGCCCTTCAGGTGGCGACCCTGCTCGACTCGCCCCGTACTGACAAGCTTCAGTTGGGAATAGCACAATCATCCCACACTGCGGCCCAGGGAAAGGGGGCATACCCTAGCCACCCCAGAACTGGCAGACCACCCCGTGGCCGCACTGATTGGCGAGGGAGAGCCCCGGTACGGAACATGACTTTGTGCCCTTATTGTCGGCGTCTTCACACGGGGGAATGCAGAGCAGGAACAGGCGCCTGCTACAGATGCGGTCAGGTAGGGCACTTTGCAGTGGATTGCCCTCAGAGAAACGATCAGCGTGTCAACCTGCCTGCAGTACAGCATCAGAGGGGCCAAGCCGGCCAACATCAGCAGGGGCGAGCTGTAGCCCATGCAACAACAGCCAGGCAAGCTGACCCGCCTGACGCGGTTGTCACAGGTACGCTACCCGTATTTGGGCATCTTGCATTAGTGTTGTTTGATTCGGGTTCGACGCATTCATTCGTATCTGAAGAGTTTGTAGAGCTAGCACAGCTAGAGAAAGAACTTTTAGAGAGTACCCTATCAGTGTCTACCCCTGCGCACAAGTTGTTGCTAGCTACCCATAGGGTTAAGGGAGGTGGAGTAACAATAGCAGGGCGTGTCATCGAAGCTACACTGATAGTGTTAAGTATGCAAGACTTCGATGTCATCTTGGGTATGGATTGGCTAGGCGAGAATCGCGTCTTGATAGACTGCGAGACCCGAATAGTGACTCTCAGGCTCCCGTCAGGGGACAGCTTTACCTACAAGGGAGCCACTTCCAAAGGTGTCCCGAGCGTCATAACCTCGCTAAGGGCTAAGAAGTTGATTCGTAGTGGCGCAATTGCATTCCTAGCCGGCGTGACCTTAGATAATAGTAACAAACAAAAACCCTCATCGGTACACATCGTCAGGGAGTTCGTAGATGTCTTTCCGGAGGATCTGTCGGGTTTGCCCCCAGCTAAGGAAGTCAATTTTGGGATCGATTTAGAACCAGGAACGGTGCCGATCTCCAAGGCACCTTACAGGATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTATAG ATGCCGGGTTTCGGGGGTTTGATGGACGAATTCGCCCCATTGAGCGCGAACTTCGTGCTCTGGGTGCTTGATGGAGGTCATCGCCCCGCTGAGCCGATAATGGCACCAAAGAGACGCGAACCGTATGTAGGGCCAGGACCTAGAAGGGGAAGAAGAGAGGAAGTTCAGGACACCTCGGTTGCAACACCTGAAGAGGAACAACCTGAACTTCAGGAGGAGGTTGGGGATATGCCCCAAACTAGCGAGGGGACAGTACCACAGCCATCAAGGTCAAAAAGACGCCGAATGAAGGCCAAGGCCCGAAGGCGGCTCGAGACACCCCCTACTACTCCCTTCTCCGAGGAGGCCCCATCGGATCCAACCCCGTGTACAGCAGTCCCACTAAACCAGCCATTAGCCATGCCCTCAGCGGAGATGTTTCAGACGTTCATGATGACGTCGATGGAAAATCAGGCTCTGACGAACCAGATGATTCAGACCATGATGTCTAATCAGTCAACAGGGCAAGGGGGCAAGGATTCAGGGACTATGACTGTGGAGTCCCGCTACTTGAGAGATTTCCAAAGGCATAAACCGCCTTCCTTTGACGGAGGCAAGATGGATCCTATCGCCGCTGAGAATTGGCTAGAGGCCATAGAAACGGCTTTTCATTTTATGAACTGCCCACCAAAGTATGAAGTCCATTGTGGGACATATATGCTGAAAGGAGAAGCGCACTTCTGGTGGAAAGGTGCTCAGAAAACCATAGTACCACAAGGAGAGTTTATTACATGGTGTCAGTTTAAAGACGCATACCTCCACAAATACTACCCAATCACTGCCAGAGTGAAAATGCAGGCCGAGTTCCTCGCATTGAAACAGGGAGACAGATCAGTGGGGGATTATGACTTGGAGTTCAATAGGCTGGCAAGGTTTTCTCCAGCCTATGTTAGTTCTGAGGAGTTTAAGGGCGAACGATTTATCGCTGGCCTGAGGGAAGAACTAAGGGGGAATGTGGCATCCCAGTCATCCTTTGTCTATACGAAAGCCCTTCAGGTGGCGACCCTGCTCGACTCGCCCCGTACTGACAAGCTTCAGTTGGGAATAGCACAATCATCCCACACTGCGGCCCAGGGAAAGGGGGCATACCCTAGCCACCCCAGAACTGGCAGACCACCCCGTGGCCGCACTGATTGGCGAGGGAGAGCCCCGGTACGGAACATGACTTTGTGCCCTTATTGTCGGCGTCTTCACACGGGGGAATGCAGAGCAGGAACAGGCGCCTGCTACAGATGCGGTCAGGTAGGGCACTTTGCAGTGGATTGCCCTCAGAGAAACGATCAGCGTGTCAACCTGCCTGCAGTACAGCATCAGAGGGGCCAAGCCGGCCAACATCAGCAGGGGCGAGCTGTAGCCCATGCAACAACAGCCAGGCAAGCTGACCCGCCTGACGCGGTTGTCACAGGTACGCTACCCGTATTTGGGCATCTTGCATTAGTGTTGTTTGATTCGGGTTCGACGCATTCATTCGTATCTGAAGAGTTTGTAGAGCTAGCACAGCTAGAGAAAGAACTTTTAGAGAGTACCCTATCAGTGTCTACCCCTGCGCACAAGTTGTTGCTAGCTACCCATAGGGTTAAGGGAGGTGGAGTAACAATAGCAGGGCGTGTCATCGAAGCTACACTGATAGTGTTAAGTATGCAAGACTTCGATGTCATCTTGGGTATGGATTGGCTAGGCGAGAATCGCGTCTTGATAGACTGCGAGACCCGAATAGTGACTCTCAGGCTCCCGTCAGGGGACAGCTTTACCTACAAGGGAGCCACTTCCAAAGGTGTCCCGAGCGTCATAACCTCGCTAAGGGCTAAGAAGTTGATTCGTAGTGGCGCAATTGCATTCCTAGCCGGCGTGACCTTAGATAATAGTAACAAACAAAAACCCTCATCGGTACACATCGTCAGGGAGTTCGTAGATGTCTTTCCGGAGGATCTGTCGGGTTTGCCCCCAGCTAAGGAAGTCAATTTTGGGATCGATTTAGAACCAGGAACGGTGCCGATCTCCAAGGCACCTTACAGGATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTATAG
BLAST of CmoCh13G003450 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1) HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104 Identity = 251/670 (37.46%), Postives = 339/670 (50.60%), Query Frame = 1
BLAST of CmoCh13G003450 vs. TrEMBL
Match: M5X787_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1) HSP 1 Score: 263.1 bits (671), Expect = 9.8e-67 Identity = 188/572 (32.87%), Postives = 260/572 (45.45%), Query Frame = 1
BLAST of CmoCh13G003450 vs. TrEMBL
Match: Q338U7_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g24460 PE=4 SV=2) HSP 1 Score: 260.0 bits (663), Expect = 8.3e-66 Identity = 201/591 (34.01%), Postives = 285/591 (48.22%), Query Frame = 1
BLAST of CmoCh13G003450 vs. TrEMBL
Match: Q8SB47_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0091O09.12 PE=4 SV=1) HSP 1 Score: 256.9 bits (655), Expect = 7.0e-65 Identity = 198/584 (33.90%), Postives = 279/584 (47.77%), Query Frame = 1
BLAST of CmoCh13G003450 vs. TrEMBL
Match: A2I5E5_BETVU (Retrotransposon protein OS=Beta vulgaris PE=4 SV=1) HSP 1 Score: 253.4 bits (646), Expect = 7.8e-64 Identity = 181/548 (33.03%), Postives = 261/548 (47.63%), Query Frame = 1
BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|307135903|gb|ADN33767.1| (gag protease polyprotein [Cucumis melo subsp. melo]) HSP 1 Score: 387.9 bits (995), Expect = 3.8e-104 Identity = 251/670 (37.46%), Postives = 339/670 (50.60%), Query Frame = 1
BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|985452009|ref|XP_015386531.1| (PREDICTED: uncharacterized protein LOC107177356 [Citrus sinensis]) HSP 1 Score: 327.4 bits (838), Expect = 6.1e-86 Identity = 211/581 (36.32%), Postives = 299/581 (51.46%), Query Frame = 1
BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|985458836|ref|XP_015387942.1| (PREDICTED: uncharacterized protein LOC107177914 [Citrus sinensis]) HSP 1 Score: 322.4 bits (825), Expect = 2.0e-84 Identity = 194/518 (37.45%), Postives = 273/518 (52.70%), Query Frame = 1
BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|702252073|ref|XP_010064348.1| (PREDICTED: uncharacterized protein LOC104451368 [Eucalyptus grandis]) HSP 1 Score: 320.1 bits (819), Expect = 9.7e-84 Identity = 197/569 (34.62%), Postives = 285/569 (50.09%), Query Frame = 1
BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|731340581|ref|XP_010681479.1| (PREDICTED: uncharacterized protein LOC104896426 [Beta vulgaris subsp. vulgaris]) HSP 1 Score: 305.1 bits (780), Expect = 3.2e-79 Identity = 194/541 (35.86%), Postives = 285/541 (52.68%), Query Frame = 1
The following BLAST results are available for this feature:
The following terms have been associated with this gene:
GO Assignments
This gene is annotated with the following GO terms.
The following mRNA feature(s) are a part of this gene:
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
The following gene(s) are orthologous to this gene: None The following gene(s) are paralogous to this gene: None The following block(s) are covering this gene:
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