CmoCh13G003450 (gene) Cucurbita moschata (Rifu)

NameCmoCh13G003450
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr13 : 4421043 .. 4424499 (-)
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: five_prime_UTRexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTAGTAGTTCTGCTTCAGATTAGCTCTTCATGTAAGTTACTAGTCAGTTTATCTGTTGTGTTTGAATTGTGTAAATTACATGAGTGTTGCTTGTATGCCTTAGGCTTCCGCCGTATGTATGCATGCGTTATTTTATGTGTAGAATTGAGTATGCCGGGTTTCGGGGGTTTGATGGACGAATTCGCCCCATTGAGCGCGAACTTCGTGCTCTGGGTGCTTGATGGAGGTCATCGCCCCGCTGAGCCGGTATGCCTAGTTTGCATGAATTACATACTATGATGTAGAAGAAGATTACATGCACCCTCTGTTAATTGCTAGGGCCCATTTCCTTGATAAGATTAGGGAATCTTGGATAGGAGCGAAATGCCGCTCCAGCCTGACTTAATCTTTCCCTAGGAACTTAGTGGTTTACCACGGTAAGAAGGTACCCCGGAGCGTTCATAGATTGCTAGCGTGTGAACGGTATCTATAGCTTCGTGGGAGGACCAAGGGGTCCCTGATCAGTCCTTACTGCTCTTAGCCATTTCGCATGGGAAATGTGTCCCCACGTCGTACAGCCCATTAGCTACATGGGAACGGGTTGGGTCGCGCCCCCCATAGAGGGACTAGATGGGCGTAGGGGTACTCAGCACACCCCTAGGCCAGGTACCATGTAGTCCCAGATAGCCATGTGGAGGTAGCACCTCATAGAGAGATACCGACCATATTAGCTTGGCATAAAGAACCTCTGGGCGTTTAATGAGAGAACGAAAAATCAGTGAAACCCAAGGGGCAAGCCCCAAGGGACCTAGATTGGAGCCAGTCGCCCTAGAACCGAAATAGGAAACCGTGGCAACCTATTAAATTAAGATGCGAAAAGAGCCTACAAGTAGGTGGCTTACTGAGTATAATTTTTATACTCATCCTTGCTATGTTTTCCTTGTTTTTTTTCAGGAGCGTGAGGCGTAGGTCAAGAGTGGGCGTGATCTGAAGGGAATTGTCACAGAGGAATGGGTTGTCCCGGGGCGTCAGTCCAGTCTTAGTCTTTATTTTTGTATTCGCATTCCTTTTAAATTTATTTTCCAAACGGTCTTGTGTTCTGTGTTTATCGTTCGAAAAACTTTATTGAAATTTGATGATTTTTGGCTACTTCATATTTAAATCTCTCGTGCGTCTGTGTCGTGTCGTTAGTCACTGTCCGTAGTAAAATATTGGGCTGTGACAAATTTGGTATCAGAGCCATCAGGTTATAGGTCCTGTAGACATTTAGGGTAGAGAGTCGTGTCCTCTGTGACTTCGCTCGTCAATCACATGCCGCTCACGACCAGACGTTCTCACGCGACGGAAACATGGAGACAAAGGTTAAGTTAGTATTTATAAAGCATACCATGACTGACTAGGGCATTATATCGCACATTACCTAGGAGATGTGTTGTGAATGAATTGTGACCCTAGTTTTTTGTTATCCTGGTAGATAATGGCACCAAAGAGACGCGAACCGTATGTAGGGCCAGGACCTAGAAGGGGAAGAAGAGAGGAAGTTCAGGACACCTCGGTTGCAACACCTGAAGAGGAACAACCTGAACTTCAGGAGGAGGTTGGGGATATGCCCCAAACTAGCGAGGGGACAGTACCACAGCCATCAAGGTCAAAAAGACGCCGAATGAAGGCCAAGGCCCGAAGGCGGCTCGAGACACCCCCTACTACTCCCTTCTCCGAGGAGGCCCCATCGGATCCAACCCCGTGTACAGCAGTCCCACTAAACCAGCCATTAGCCATGCCCTCAGCGGAGATGTTTCAGACGTTCATGATGACGTCGATGGAAAATCAGGCTCTGACGAACCAGATGATTCAGACCATGATGTCTAATCAGTCAACAGGGCAAGGGGGCAAGGATTCAGGGACTATGACTGTGGAGTCCCGCTACTTGAGAGATTTCCAAAGGCATAAACCGCCTTCCTTTGACGGAGGCAAGATGGATCCTATCGCCGCTGAGAATTGGCTAGAGGCCATAGAAACGGCTTTTCATTTTATGAACTGCCCACCAAAGTATGAAGTCCATTGTGGGACATATATGCTGAAAGGAGAAGCGCACTTCTGGTGGAAAGGTGCTCAGAAAACCATAGTACCACAAGGAGAGTTTATTACATGGTGTCAGTTTAAAGACGCATACCTCCACAAATACTACCCAATCACTGCCAGAGTGAAAATGCAGGCCGAGTTCCTCGCATTGAAACAGGGAGACAGATCAGTGGGGGATTATGACTTGGAGTTCAATAGGCTGGCAAGGTTTTCTCCAGCCTATGTTAGTTCTGAGGAGTTTAAGGGCGAACGATTTATCGCTGGCCTGAGGGAAGAACTAAGGGGGAATGTGGCATCCCAGTCATCCTTTGTCTATACGAAAGCCCTTCAGGTGGCGACCCTGCTCGACTCGCCCCGTACTGACAAGCTTCAGTTGGGAATAGCACAATCATCCCACACTGCGGCCCAGGGAAAGGGGGCATACCCTAGCCACCCCAGAACTGGCAGACCACCCCGTGGCCGCACTGATTGGCGAGGGAGAGCCCCGGTACGGAACATGACTTTGTGCCCTTATTGTCGGCGTCTTCACACGGGGGAATGCAGAGCAGGAACAGGCGCCTGCTACAGATGCGGTCAGGTAGGGCACTTTGCAGTGGATTGCCCTCAGAGAAACGATCAGCGTGTCAACCTGCCTGCAGTACAGCATCAGAGGGGCCAAGCCGGCCAACATCAGCAGGGGCGAGCTGTAGCCCATGCAACAACAGCCAGGCAAGCTGACCCGCCTGACGCGGTTGTCACAGGTACGCTACCCGTATTTGGGCATCTTGCATTAGTGTTGTTTGATTCGGGTTCGACGCATTCATTCGTATCTGAAGAGTTTGTAGAGCTAGCACAGCTAGAGAAAGAACTTTTAGAGAGTACCCTATCAGTGTCTACCCCTGCGCACAAGTTGTTGCTAGCTACCCATAGGGTTAAGGGAGGTGGAGTAACAATAGCAGGGCGTGTCATCGAAGCTACACTGATAGTGTTAAGTATGCAAGACTTCGATGTCATCTTGGGTATGGATTGGCTAGGCGAGAATCGCGTCTTGATAGACTGCGAGACCCGAATAGTGACTCTCAGGCTCCCGTCAGGGGACAGCTTTACCTACAAGGGAGCCACTTCCAAAGGTGTCCCGAGCGTCATAACCTCGCTAAGGGCTAAGAAGTTGATTCGTAGTGGCGCAATTGCATTCCTAGCCGGCGTGACCTTAGATAATAGTAACAAACAAAAACCCTCATCGGTACACATCGTCAGGGAGTTCGTAGATGTCTTTCCGGAGGATCTGTCGGGTTTGCCCCCAGCTAAGGAAGTCAATTTTGGGATCGATTTAGAACCAGGAACGGTGCCGATCTCCAAGGCACCTTACAGGATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTATAG

mRNA sequence

ATGCTAGTAGTTCTGCTTCAGATTAGCTCTTCATAATTGAGTATGCCGGGTTTCGGGGGTTTGATGGACGAATTCGCCCCATTGAGCGCGAACTTCGTGCTCTGGGTGCTTGATGGAGGTCATCGCCCCGCTGAGCCGATAATGGCACCAAAGAGACGCGAACCGTATGTAGGGCCAGGACCTAGAAGGGGAAGAAGAGAGGAAGTTCAGGACACCTCGGTTGCAACACCTGAAGAGGAACAACCTGAACTTCAGGAGGAGGTTGGGGATATGCCCCAAACTAGCGAGGGGACAGTACCACAGCCATCAAGGTCAAAAAGACGCCGAATGAAGGCCAAGGCCCGAAGGCGGCTCGAGACACCCCCTACTACTCCCTTCTCCGAGGAGGCCCCATCGGATCCAACCCCGTGTACAGCAGTCCCACTAAACCAGCCATTAGCCATGCCCTCAGCGGAGATGTTTCAGACGTTCATGATGACGTCGATGGAAAATCAGGCTCTGACGAACCAGATGATTCAGACCATGATGTCTAATCAGTCAACAGGGCAAGGGGGCAAGGATTCAGGGACTATGACTGTGGAGTCCCGCTACTTGAGAGATTTCCAAAGGCATAAACCGCCTTCCTTTGACGGAGGCAAGATGGATCCTATCGCCGCTGAGAATTGGCTAGAGGCCATAGAAACGGCTTTTCATTTTATGAACTGCCCACCAAAGTATGAAGTCCATTGTGGGACATATATGCTGAAAGGAGAAGCGCACTTCTGGTGGAAAGGTGCTCAGAAAACCATAGTACCACAAGGAGAGTTTATTACATGGTGTCAGTTTAAAGACGCATACCTCCACAAATACTACCCAATCACTGCCAGAGTGAAAATGCAGGCCGAGTTCCTCGCATTGAAACAGGGAGACAGATCAGTGGGGGATTATGACTTGGAGTTCAATAGGCTGGCAAGGTTTTCTCCAGCCTATGTTAGTTCTGAGGAGTTTAAGGGCGAACGATTTATCGCTGGCCTGAGGGAAGAACTAAGGGGGAATGTGGCATCCCAGTCATCCTTTGTCTATACGAAAGCCCTTCAGGTGGCGACCCTGCTCGACTCGCCCCGTACTGACAAGCTTCAGTTGGGAATAGCACAATCATCCCACACTGCGGCCCAGGGAAAGGGGGCATACCCTAGCCACCCCAGAACTGGCAGACCACCCCGTGGCCGCACTGATTGGCGAGGGAGAGCCCCGGTACGGAACATGACTTTGTGCCCTTATTGTCGGCGTCTTCACACGGGGGAATGCAGAGCAGGAACAGGCGCCTGCTACAGATGCGGTCAGGTAGGGCACTTTGCAGTGGATTGCCCTCAGAGAAACGATCAGCGTGTCAACCTGCCTGCAGTACAGCATCAGAGGGGCCAAGCCGGCCAACATCAGCAGGGGCGAGCTGTAGCCCATGCAACAACAGCCAGGCAAGCTGACCCGCCTGACGCGGTTGTCACAGGTACGCTACCCGTATTTGGGCATCTTGCATTAGTGTTGTTTGATTCGGGTTCGACGCATTCATTCGTATCTGAAGAGTTTGTAGAGCTAGCACAGCTAGAGAAAGAACTTTTAGAGAGTACCCTATCAGTGTCTACCCCTGCGCACAAGTTGTTGCTAGCTACCCATAGGGTTAAGGGAGGTGGAGTAACAATAGCAGGGCGTGTCATCGAAGCTACACTGATAGTGTTAAGTATGCAAGACTTCGATGTCATCTTGGGTATGGATTGGCTAGGCGAGAATCGCGTCTTGATAGACTGCGAGACCCGAATAGTGACTCTCAGGCTCCCGTCAGGGGACAGCTTTACCTACAAGGGAGCCACTTCCAAAGGTGTCCCGAGCGTCATAACCTCGCTAAGGGCTAAGAAGTTGATTCGTAGTGGCGCAATTGCATTCCTAGCCGGCGTGACCTTAGATAATAGTAACAAACAAAAACCCTCATCGGTACACATCGTCAGGGAGTTCGTAGATGTCTTTCCGGAGGATCTGTCGGGTTTGCCCCCAGCTAAGGAAGTCAATTTTGGGATCGATTTAGAACCAGGAACGGTGCCGATCTCCAAGGCACCTTACAGGATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTATAG

Coding sequence (CDS)

ATGCCGGGTTTCGGGGGTTTGATGGACGAATTCGCCCCATTGAGCGCGAACTTCGTGCTCTGGGTGCTTGATGGAGGTCATCGCCCCGCTGAGCCGATAATGGCACCAAAGAGACGCGAACCGTATGTAGGGCCAGGACCTAGAAGGGGAAGAAGAGAGGAAGTTCAGGACACCTCGGTTGCAACACCTGAAGAGGAACAACCTGAACTTCAGGAGGAGGTTGGGGATATGCCCCAAACTAGCGAGGGGACAGTACCACAGCCATCAAGGTCAAAAAGACGCCGAATGAAGGCCAAGGCCCGAAGGCGGCTCGAGACACCCCCTACTACTCCCTTCTCCGAGGAGGCCCCATCGGATCCAACCCCGTGTACAGCAGTCCCACTAAACCAGCCATTAGCCATGCCCTCAGCGGAGATGTTTCAGACGTTCATGATGACGTCGATGGAAAATCAGGCTCTGACGAACCAGATGATTCAGACCATGATGTCTAATCAGTCAACAGGGCAAGGGGGCAAGGATTCAGGGACTATGACTGTGGAGTCCCGCTACTTGAGAGATTTCCAAAGGCATAAACCGCCTTCCTTTGACGGAGGCAAGATGGATCCTATCGCCGCTGAGAATTGGCTAGAGGCCATAGAAACGGCTTTTCATTTTATGAACTGCCCACCAAAGTATGAAGTCCATTGTGGGACATATATGCTGAAAGGAGAAGCGCACTTCTGGTGGAAAGGTGCTCAGAAAACCATAGTACCACAAGGAGAGTTTATTACATGGTGTCAGTTTAAAGACGCATACCTCCACAAATACTACCCAATCACTGCCAGAGTGAAAATGCAGGCCGAGTTCCTCGCATTGAAACAGGGAGACAGATCAGTGGGGGATTATGACTTGGAGTTCAATAGGCTGGCAAGGTTTTCTCCAGCCTATGTTAGTTCTGAGGAGTTTAAGGGCGAACGATTTATCGCTGGCCTGAGGGAAGAACTAAGGGGGAATGTGGCATCCCAGTCATCCTTTGTCTATACGAAAGCCCTTCAGGTGGCGACCCTGCTCGACTCGCCCCGTACTGACAAGCTTCAGTTGGGAATAGCACAATCATCCCACACTGCGGCCCAGGGAAAGGGGGCATACCCTAGCCACCCCAGAACTGGCAGACCACCCCGTGGCCGCACTGATTGGCGAGGGAGAGCCCCGGTACGGAACATGACTTTGTGCCCTTATTGTCGGCGTCTTCACACGGGGGAATGCAGAGCAGGAACAGGCGCCTGCTACAGATGCGGTCAGGTAGGGCACTTTGCAGTGGATTGCCCTCAGAGAAACGATCAGCGTGTCAACCTGCCTGCAGTACAGCATCAGAGGGGCCAAGCCGGCCAACATCAGCAGGGGCGAGCTGTAGCCCATGCAACAACAGCCAGGCAAGCTGACCCGCCTGACGCGGTTGTCACAGGTACGCTACCCGTATTTGGGCATCTTGCATTAGTGTTGTTTGATTCGGGTTCGACGCATTCATTCGTATCTGAAGAGTTTGTAGAGCTAGCACAGCTAGAGAAAGAACTTTTAGAGAGTACCCTATCAGTGTCTACCCCTGCGCACAAGTTGTTGCTAGCTACCCATAGGGTTAAGGGAGGTGGAGTAACAATAGCAGGGCGTGTCATCGAAGCTACACTGATAGTGTTAAGTATGCAAGACTTCGATGTCATCTTGGGTATGGATTGGCTAGGCGAGAATCGCGTCTTGATAGACTGCGAGACCCGAATAGTGACTCTCAGGCTCCCGTCAGGGGACAGCTTTACCTACAAGGGAGCCACTTCCAAAGGTGTCCCGAGCGTCATAACCTCGCTAAGGGCTAAGAAGTTGATTCGTAGTGGCGCAATTGCATTCCTAGCCGGCGTGACCTTAGATAATAGTAACAAACAAAAACCCTCATCGGTACACATCGTCAGGGAGTTCGTAGATGTCTTTCCGGAGGATCTGTCGGGTTTGCCCCCAGCTAAGGAAGTCAATTTTGGGATCGATTTAGAACCAGGAACGGTGCCGATCTCCAAGGCACCTTACAGGATGGCACCTGCAGAACTCAGGGAATTGAAGGAACAGTTATAG
BLAST of CmoCh13G003450 vs. TrEMBL
Match: E5GBB7_CUCME (Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 387.9 bits (995), Expect = 2.6e-104
Identity = 251/670 (37.46%), Postives = 339/670 (50.60%), Query Frame = 1

Query: 47  PRRGRREEVQDTSVATPEEEQPELQEEVGDMPQTSEGTVPQPSRSKRRRMKAKARRRLET 106
           PRRG R   +          QPE+Q              P P+        A   +R   
Sbjct: 233 PRRGARRGGRGGRGRGAGRVQPEVQPVA---------QAPDPAAPVTHADLAAMEQRFRD 292

Query: 107 PPTTPFSEEAPSDPTPCTA---VPLNQPLAMPSAEMFQTFMMTSMENQALTNQMIQTMMS 166
                  ++ P+ PTP  A   VP   P  +P A  F    +++                
Sbjct: 293 MIMQMREQQKPASPTPAPAPAPVPAPAPAPVPVAPQFVPDQLSA---------------- 352

Query: 167 NQSTGQGGKDSGTMTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPP 226
                           E+++LRDF+++ P +FDG   DP  A+ WL ++ET F +M CP 
Sbjct: 353 ----------------EAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPE 412

Query: 227 KYEVHCGTYMLKGEAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFL 286
             +V C  +ML      WW+  ++ +      ITW QFK+++  K++  + R   + EFL
Sbjct: 413 DQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFL 472

Query: 287 ALKQGDRSVGDYDLEFNRLARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTKA 346
            L+QGD +V  YD EF+ L+RF+P  +++E  + ++F+ GLR +++G V +     +  A
Sbjct: 473 NLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADA 532

Query: 347 LQVATLLDSPRTDKLQLGIAQSSHTAAQGKGAYPSHPRTGRP---------PRG------ 406
           L++A  L            A SS TA +G  +        +P         P G      
Sbjct: 533 LRLAVDLSLQER-------ANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQ 592

Query: 407 RTDWRGRAPVRNMTLCPYCRRLHTGECRAGTGACYRCGQVGHFAVDCPQRNDQRVNLPAV 466
           +  +      R   LC  C + H G C  GT  C++C Q GH A  CP R       P  
Sbjct: 593 QKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLR-------PTG 652

Query: 467 QHQRGQAGQHQQGRAVAHATTARQADPPDAVVTGTLPVFGHLALVLFDSGSTHSFVSEEF 526
             Q   AG   QGR  A  T   +A+    VVTGTLPV GH ALVLFDSGS+HSF+S  F
Sbjct: 653 IAQNQGAGAPLQGRVFA--TNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAF 712

Query: 527 VELAQLEKELLESTLSVSTPAHKLLLATHRVKGGGVTIAGRVIEATLIVLSMQDFDVILG 586
           V  A+LE E L   LSVSTP+ + +L+  +VK   + IAG VIE TLIVL M DFDVILG
Sbjct: 713 VSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLIVLDMLDFDVILG 772

Query: 587 MDWLGENRVLIDCETRIVTLRLPSGDSFTYKGATSKGVPSVITSLRAKKLIRSGAIAFLA 646
           MDWL  N   IDC  + VT   PS  SF +KG  SK +P VI+++RA KL+  G    LA
Sbjct: 773 MDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILA 832

Query: 647 GVTLDNSNKQKPSSVHIVREFVDVFPEDLSGLPPAKEVNFGIDLEPGTVPISKAPYRMAP 699
            V          SS  +VR++ DVFPE+L GLPP +EV F I+LEPGTVPIS+APYRMAP
Sbjct: 833 SVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAP 845

BLAST of CmoCh13G003450 vs. TrEMBL
Match: M5X787_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1)

HSP 1 Score: 263.1 bits (671), Expect = 9.8e-67
Identity = 188/572 (32.87%), Postives = 260/572 (45.45%), Query Frame = 1

Query: 183 YLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKGEAHFWW 242
           Y    +R     FDG    P  A+ W+E +E     M  P    V   TY L   A  WW
Sbjct: 88  YANQVKRVGATDFDGDGT-PAVAKEWIEKMERIMEVMAVPQNSRVTLATYFLIKHARHWW 147

Query: 243 KGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGDYDLEFNRL 302
              ++        ITW  F  A+  +YYP   +     EFL L+QG  +V +Y+ +F+ L
Sbjct: 148 DSVKRRY-RDPLAITWQVFIAAFDSQYYPQAYQNLKMQEFLQLEQGMMTVLEYEKKFHDL 207

Query: 303 ARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTKALQVATLLDS------PRTD 362
           +++    V  E  K + F  GL+  +R  V SQ    +   +  A+L++S      PR +
Sbjct: 208 SKYCLPLVEDESKKCQLFTMGLKASIRDIVISQRLTNFGDVVMSASLIESSQMMARPRGE 267

Query: 363 --KLQLGIAQSSHTAAQGKGAYPSHPRTGR------------------PPRGRTDWRGRA 422
             + Q  I   S  +++ +G+Y S   +GR                     G     G A
Sbjct: 268 LRRQQFEIGGPSQGSSK-RGSYSSGSSSGRSYGGYRPGFSSSGGSNQSSSSGNRSGVGTA 327

Query: 423 PVRNMTLCPY-----------CRRLHTGECRAGTGACYRCGQVGHFAVDCP----QRNDQ 482
                 L              C R H+G C+ GT  CY CGQ GHF  DCP     R   
Sbjct: 328 RGAGRQLLSGSGRRSRPQCARCGRYHSGPCQQGTTGCYYCGQPGHFQKDCPLFPQTRETT 387

Query: 483 RVNLPAVQHQRGQA--------GQHQQGRAVAHATTAR-------QADPPDAVVTGTLPV 542
               P      G A           Q+GR      T R       +A     V+TG LPV
Sbjct: 388 DAPTPGTASSSGGAQTSVASHGSSQQRGRGGRSRATGRVYNMSQQEAHASPEVITGILPV 447

Query: 543 FGHLALVLFDSGSTHSFVSEEFVELAQLEKELLESTLSVSTPAHKLLLATHRVKGGGVTI 602
           FG  A VL D G+THSFV+  F   A +    L++ L++S P  ++       +   V +
Sbjct: 448 FGIPARVLIDPGATHSFVTPSFAHNANVRLSALQTELAISVPTGEIFRVGTVYRDSTVLV 507

Query: 603 AGRVIEATLIVLSMQDFDVILGMDWLGENRVLIDCETRIVTLRLPSGDSFTYKGATSKGV 662
                EA LI L M D DVILGMDWL  +R  +DC  + V  R P     T+ G      
Sbjct: 508 GNVFFEADLIPLGMVDLDVILGMDWLARHRASVDCFRKEVVFRSPGRPEVTFYGKRRVLP 567

Query: 663 PSVITSLRAKKLIRSGAIAFLAGVTLDNSNKQKPSSVHIVREFVDVFPEDLSGLPPAKEV 699
             +I+++ AK+L+R G   ++A V     N+ +   + +V++F DVFPEDL GLPP +E+
Sbjct: 568 SYLISAMTAKRLLRKGCSGYIAHVIDTRDNELRLEDIPVVQDFSDVFPEDLPGLPPHREI 627

BLAST of CmoCh13G003450 vs. TrEMBL
Match: Q338U7_ORYSJ (Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. japonica GN=LOC_Os10g24460 PE=4 SV=2)

HSP 1 Score: 260.0 bits (663), Expect = 8.3e-66
Identity = 201/591 (34.01%), Postives = 285/591 (48.22%), Query Frame = 1

Query: 117 PSDPTPCTAVPLNQPLAMPSAEMFQTFMMTSM--ENQALTNQMIQTMMSNQSTGQGGKDS 176
           PS  +     PL + L +      QT MM +M  + Q    QM Q MM  Q   Q  +  
Sbjct: 286 PSSDSGNGPPPLPENLTLAQVMAHQTQMMAAMMQQMQQQHQQMHQRMM--QHAEQQHQQF 345

Query: 177 GTMTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYML 236
           G    +S+ L +F R +PP+F     +PI A +WL AIE   + + C  + +V   T+ L
Sbjct: 346 GPPPPQSK-LPEFLRVRPPTFSS-TTNPIEANDWLHAIEKKLNLLQCNDQEKVAFATHQL 405

Query: 237 KGEAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGD 296
           +G A  WW     T  P G  +TW +F  ++     P     + + EF AL QG+R+V +
Sbjct: 406 QGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTE 465

Query: 297 YDLEFNRLARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTKALQVATLLDSPR 356
           Y  EFNRLAR++P  V ++  K E+F+AGL +EL   + S     + + +  A   +  R
Sbjct: 466 YLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQLISGDYADFERLVDKAIRQEDQR 525

Query: 357 TD----KLQLGIAQSSHTAA---QGKGAYPSHPRTGRPPRGRTDWRGRAPVRNMTLCPYC 416
                 +     A  S TA    QG     +H   G+P RG       AP ++    P  
Sbjct: 526 NKMDRKRKSPEAALHSRTAGNFHQGSSGSQNH-HGGQPNRGAAPRPPMAPAQSGP--PAQ 585

Query: 417 RRLHTGECRAGTGACYRCGQVGHFAVDCPQRNDQRVNLPAVQHQRGQAGQHQQGRAVAHA 476
            +  TG   A  G+C+ CG++GHFA  CP+                +AG       V HA
Sbjct: 586 AKKETG---AKPGSCFNCGELGHFADKCPKPR--------------RAGPRFIQARVNHA 645

Query: 477 TTARQADPPDAVVTGTLPVFGHLALVLFDSGSTHSFVSEEFVELAQLEKELLESTLSVST 536
           + A +A     VV GT PV    A VLFDSG+THSF+S++FV +  L KE L + + V T
Sbjct: 646 S-AEEAQTAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHT 705

Query: 537 PAHKLLLATHRVKGGGVTIAGRVIEATLIVLSMQDFDVILGMDWLGENRVLIDCETRIVT 596
           P +     +       + I      A LI+L  +D DVILGMDWL +   +IDC  R VT
Sbjct: 706 PGNSSTSVSFS-PSVLIEIQRLPFLANLILLESKDLDVILGMDWLTKFNGVIDCANRTVT 765

Query: 597 LRLPSGDSFTYKGATSKGVPSVITSLRAKKLIRSGAIAFLAGVTLDNSNKQKPSSVHIVR 656
           L    G++  YK                K+ +    I     V  +  N +K   + IV 
Sbjct: 766 LTNEKGETVVYKSLAPP-----------KQGVSLNQIEMEVPVVTEEKNLKKLEDIPIVS 825

Query: 657 EFVDVFPEDLSGLPPAKEVNFGIDLEPGTVPISKAPYRMAPAELRELKEQL 699
           E+ +VFPEDL+ +PP +E+ F IDL PGT PI K PYRMA  EL E+K+Q+
Sbjct: 826 EYPEVFPEDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 838

BLAST of CmoCh13G003450 vs. TrEMBL
Match: Q8SB47_ORYSJ (Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0091O09.12 PE=4 SV=1)

HSP 1 Score: 256.9 bits (655), Expect = 7.0e-65
Identity = 198/584 (33.90%), Postives = 279/584 (47.77%), Query Frame = 1

Query: 117 PSDPTPCTAVPLNQPLAMPSAEMFQTFMMTSM--ENQALTNQMIQTMMSNQSTGQGGKDS 176
           PS  +     PL + L +      QT MM +M  + Q    QM Q MM  Q   Q  +  
Sbjct: 286 PSSDSGNGPPPLPENLTLAQVMAHQTQMMAAMMQQMQQQHQQMHQRMM--QHAEQQHQQF 345

Query: 177 GTMTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYML 236
           G    +S+ L +F R +PP+F     +PI A +WL AIE   + + C  + +V   T+ L
Sbjct: 346 GPPPPQSK-LPEFLRVRPPTFSS-TTNPIEANDWLHAIEKKLNLLQCNDQEKVAFATHQL 405

Query: 237 KGEAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGD 296
           +G A  WW     T  P G  +TW +F  ++     P     + + EF AL QG+R+V +
Sbjct: 406 QGPASAWWDNHMATR-PPGTEVTWAEFCRSFRKAQVPDGVVAQKKREFRALHQGNRTVTE 465

Query: 297 YDLEFNRLARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTKALQVATLLDSPR 356
           Y  EFNRLAR++P  V ++  K E+F+AGL +EL                    L+    
Sbjct: 466 YLHEFNRLARYAPEDVRTDAEKQEKFMAGLDDELTNQ-----------------LISGDY 525

Query: 357 TDKLQLGIAQSSHTAAQGKGAYPSHPRTGRPPRGRTDWRGRAPVRNMTLCPYCRRLHTGE 416
            D  +L    +S    QG     +H   G+P RG       AP ++    P   +  TG 
Sbjct: 526 ADFERLHRPFNSSNFHQGSSGSQNH-HGGQPNRGAAPRPPMAPAQSGP--PAQAKKETG- 585

Query: 417 CRAGTGACYRCGQVGHFAVDCPQRNDQRVNLPAVQHQRGQAGQHQQGRAVAHATTARQAD 476
             A  G+C+ CG++GHFA  CP+                +AG       V HA+ A +A 
Sbjct: 586 --AKPGSCFNCGELGHFADKCPKPR--------------RAGPRFIQARVNHAS-AEEAQ 645

Query: 477 PPDAVVTGTLPVFGHLALVLFDSGSTHSFVSEEFVELAQLEKELLESTLSVSTPAHKLLL 536
               VV GT PV    A VLFDSG+THSF+S++FV +  L KE L + + V TP +    
Sbjct: 646 TAPEVVLGTFPVNSIPATVLFDSGATHSFISKKFVGMYGLRKEELSTPMRVHTPGNSSTS 705

Query: 537 ATHRVKGGGVTIAGRVIEATLIVLSMQDFDVILGMDWLGENRVLIDCETRIVTLRLPSGD 596
            +       + I      A LI+L  +D DVILGMDWL +   +IDC  R VTL    G+
Sbjct: 706 VSFS-PSVLIEIQRLPFLANLILLESKDLDVILGMDWLTKFNGVIDCANRTVTLTNEKGE 765

Query: 597 SFTYKGATSKGVPSVITSLRAKKLIRSGAIAFLAGVTLDNSNKQKPSSVHIVREFVDVFP 656
           +  YK                K+ +    I     V  +  N +K   + IV E+ +VFP
Sbjct: 766 TVVYKSLAPP-----------KQGVSLNQIEMEVPVVTEEKNLKKLEDIPIVSEYPEVFP 814

Query: 657 EDLSGLPPAKEVNFGIDLEPGTVPISKAPYRMAPAELRELKEQL 699
           EDL+ +PP +E+ F IDL PGT PI K PYRMA  EL E+K+Q+
Sbjct: 826 EDLTTMPPKREIEFRIDLAPGTAPIYKRPYRMAANELAEVKKQV 814

BLAST of CmoCh13G003450 vs. TrEMBL
Match: A2I5E5_BETVU (Retrotransposon protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 7.8e-64
Identity = 181/548 (33.03%), Postives = 261/548 (47.63%), Query Frame = 1

Query: 191 KPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKGEAHFWWK--GAQKT 250
           KPP F G + DP   ENW+   E  F  +NCP    V      LK EA  WW+  GA+  
Sbjct: 40  KPPYFKG-QADPTFLENWIREFEKLFEVVNCPADMRVGQAVLYLKDEADLWWRENGAR-- 99

Query: 251 IVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGDYDLEFNRLARFSPA 310
            +   E   W  F      K+YP   R +   EF+ L+ G  ++ +Y  +F  L+RF+P 
Sbjct: 100 -LSAAEGFNWEAFVIVLRGKFYPAFMRKQKAQEFINLRMGSMTISEYYSKFIALSRFAPE 159

Query: 311 YVSSEEFKGERFIAGLREELR----GNVASQSSFVYTKALQVATLLDSPRTDKLQLGIAQ 370
            V++EE K +RF  GL +E++    G   +    VY +A  +  L  S R  K  +   +
Sbjct: 160 VVATEELKAQRFEQGLTDEIQLGLGGETFTSLDVVYGRASHIYGL-QSRRDKKAGIVGEK 219

Query: 371 SSHTAAQGKGAYPSHPRTGR---PPRGRTDWRGRAPVRNMTLCPYCRRLHTG-ECRAGTG 430
               +  G        R G      R   D R +     + +C +C + H G +C+    
Sbjct: 220 RKEVSTGGNQNNFKKNRNGNGNFQGRNNQDNRSQGRPERVHICKFCDKNHPGKDCKGELV 279

Query: 431 ACYRCGQVGHFAVDCPQR-----------NDQRVNLPAVQHQR----GQAGQHQQGRAVA 490
            C+ C + GH   +C  +           N  R     + +Q     GQ  Q    R  A
Sbjct: 280 TCHYCQKKGHREYECYTKHGKGLKIQGNGNQARPGSNQIGNQGPKPGGQNNQGNHSRPAA 339

Query: 491 HATTAR-------------QADPPDAVVTGTLPVFGHLALVLFDSGSTHSFVSEEFVE-L 550
           +  +A+             +A+    VVTG   +       LFDSG+T+SF+S   ++ L
Sbjct: 340 NDNSAQNKPAGKVFVMSHNEAERSADVVTGNFSINSVFVKTLFDSGATYSFISPSVLKSL 399

Query: 551 AQLEKELLESTLSVSTPAHKLLLATHRVKGGGVTIAGRVIEATLIVLSMQDFDVILGMDW 610
             +E E ++  LSVS P  +++  T   K   + I G V  + LI  ++ D DVILGM+W
Sbjct: 400 GLVEHESID--LSVSIPTGEVVKCTKLFKNLPLKIGGSVFPSELIEFNLGDLDVILGMNW 459

Query: 611 LGENRVLIDCETRIVTLRLPSGDSFTYKGATSKGVPSVITSLRAKKLIRSGAIAFLAGVT 670
           L   +  IDCE + V LR PSG   +Y+         VI++L+ +KL+R G   F   V 
Sbjct: 460 LSLYKARIDCEVQKVVLRNPSGKFTSYRRFGKPKNFGVISALQVQKLMRKGCELFFCSVQ 519

Query: 671 -LDNSNKQKPSSVHIVREFVDVFPEDLSGLPPAKEVNFGIDLEPGTVPISKAPYRMAPAE 699
            +    + K   V IV EF+DVFP ++SG+PPA+ V F IDL PGT PISKAPYRMAP E
Sbjct: 520 DVSKEAELKLEDVSIVNEFMDVFPSEISGMPPARAVEFTIDLVPGTAPISKAPYRMAPPE 579

BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|307135903|gb|ADN33767.1| (gag protease polyprotein [Cucumis melo subsp. melo])

HSP 1 Score: 387.9 bits (995), Expect = 3.8e-104
Identity = 251/670 (37.46%), Postives = 339/670 (50.60%), Query Frame = 1

Query: 47  PRRGRREEVQDTSVATPEEEQPELQEEVGDMPQTSEGTVPQPSRSKRRRMKAKARRRLET 106
           PRRG R   +          QPE+Q              P P+        A   +R   
Sbjct: 233 PRRGARRGGRGGRGRGAGRVQPEVQPVA---------QAPDPAAPVTHADLAAMEQRFRD 292

Query: 107 PPTTPFSEEAPSDPTPCTA---VPLNQPLAMPSAEMFQTFMMTSMENQALTNQMIQTMMS 166
                  ++ P+ PTP  A   VP   P  +P A  F    +++                
Sbjct: 293 MIMQMREQQKPASPTPAPAPAPVPAPAPAPVPVAPQFVPDQLSA---------------- 352

Query: 167 NQSTGQGGKDSGTMTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPP 226
                           E+++LRDF+++ P +FDG   DP  A+ WL ++ET F +M CP 
Sbjct: 353 ----------------EAKHLRDFRKYNPTTFDGSLEDPTRAQMWLSSLETIFRYMKCPE 412

Query: 227 KYEVHCGTYMLKGEAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFL 286
             +V C  +ML      WW+  ++ +      ITW QFK+++  K++  + R   + EFL
Sbjct: 413 DQKVQCAVFMLTDRGTAWWETTERMLGGDVSQITWQQFKESFYAKFFSASLRDAKRQEFL 472

Query: 287 ALKQGDRSVGDYDLEFNRLARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTKA 346
            L+QGD +V  YD EF+ L+RF+P  +++E  + ++F+ GLR +++G V +     +  A
Sbjct: 473 NLEQGDMTVEQYDAEFDMLSRFAPEMIATEAARADKFVRGLRLDIQGLVRAFRPATHADA 532

Query: 347 LQVATLLDSPRTDKLQLGIAQSSHTAAQGKGAYPSHPRTGRP---------PRG------ 406
           L++A  L            A SS TA +G  +        +P         P G      
Sbjct: 533 LRLAVDLSLQER-------ANSSKTAGRGSTSGQKRKAEQQPVPVPQRNFRPGGEFRSFQ 592

Query: 407 RTDWRGRAPVRNMTLCPYCRRLHTGECRAGTGACYRCGQVGHFAVDCPQRNDQRVNLPAV 466
           +  +      R   LC  C + H G C  GT  C++C Q GH A  CP R       P  
Sbjct: 593 QKPFEAGEAARGKPLCTTCGKHHLGRCLFGTRTCFKCRQEGHTADRCPLR-------PTG 652

Query: 467 QHQRGQAGQHQQGRAVAHATTARQADPPDAVVTGTLPVFGHLALVLFDSGSTHSFVSEEF 526
             Q   AG   QGR  A  T   +A+    VVTGTLPV GH ALVLFDSGS+HSF+S  F
Sbjct: 653 IAQNQGAGAPLQGRVFA--TNRTEAEKAGTVVTGTLPVLGHYALVLFDSGSSHSFISSAF 712

Query: 527 VELAQLEKELLESTLSVSTPAHKLLLATHRVKGGGVTIAGRVIEATLIVLSMQDFDVILG 586
           V  A+LE E L   LSVSTP+ + +L+  +VK   + IAG VIE TLIVL M DFDVILG
Sbjct: 713 VSHARLEVEPLHHVLSVSTPSGECMLSKEKVKACQIEIAGHVIEVTLIVLDMLDFDVILG 772

Query: 587 MDWLGENRVLIDCETRIVTLRLPSGDSFTYKGATSKGVPSVITSLRAKKLIRSGAIAFLA 646
           MDWL  N   IDC  + VT   PS  SF +KG  SK +P VI+++RA KL+  G    LA
Sbjct: 773 MDWLAANHASIDCSRKEVTFNPPSMASFKFKGGGSKSLPQVISAIRASKLLSQGTWGILA 832

Query: 647 GVTLDNSNKQKPSSVHIVREFVDVFPEDLSGLPPAKEVNFGIDLEPGTVPISKAPYRMAP 699
            V          SS  +VR++ DVFPE+L GLPP +EV F I+LEPGTVPIS+APYRMAP
Sbjct: 833 SVVDTREADVSLSSEPVVRDYPDVFPEELPGLPPHREVEFAIELEPGTVPISRAPYRMAP 845

BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|985452009|ref|XP_015386531.1| (PREDICTED: uncharacterized protein LOC107177356 [Citrus sinensis])

HSP 1 Score: 327.4 bits (838), Expect = 6.1e-86
Identity = 211/581 (36.32%), Postives = 299/581 (51.46%), Query Frame = 1

Query: 144 MMTSMENQALTNQMIQTMMSNQSTGQ---------GGKDSGTMTVESRYLRDFQRHKPPS 203
           M+  ME Q+   ++IQ M   +   Q         G +D G M      L  F++  PP+
Sbjct: 41  MLRLMEQQS---KLIQDMARGRVGAQENVPVERQGGARDHGAMV----NLERFKKLGPPT 100

Query: 204 FDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKGEAHFWWKGAQKTIVP--Q 263
           F G   DP+ AE WL+ +E  F  M C     V   +++L+GEA  WW    + I    Q
Sbjct: 101 FQG-TADPMVAEAWLKQMEKIFVAMGCNDDQRVILASFVLQGEADHWWDAKSRLIRAGLQ 160

Query: 264 GEFITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGDYDLEFNRLARFSPAYVSS 323
              ITW  F +A+  KY+P   R +M+A+FL L QG +SV +Y+ +F  L+RF+   V++
Sbjct: 161 DAPITWELFLEAFHEKYFPERVRHQMEADFLRLTQGTKSVAEYEEQFTALSRFAHTLVAN 220

Query: 324 EEFKGERFIAGLREELRGNVASQSSFVYTKALQVATLLDSPRTDKLQLGIAQSSHTAAQG 383
           E  K  +F+ GLR  ++G +       Y   +  A L +    D L+  + +        
Sbjct: 221 EGSKCRKFLEGLRPNIKGRLTILKINNYADLVDRAILAEK---DILEAQVTRDQRNKKNQ 280

Query: 384 KGAYPSHPRTGRPPR----------GRTDW-----RGRAPVRNMTLCPYCRRLHTGECRA 443
           +G     PR G   R          G   W      G    RN  +C +C R H GEC  
Sbjct: 281 QGG----PRNGSSFRQGTHSQKYNGGGNKWDNKGVTGDTAWRNYPICRHCERRHPGECHW 340

Query: 444 GTGACYRCGQVGHFAVDCPQRNDQRVNLPAVQHQRGQAGQHQQGRAVAHATTARQADPPD 503
            TGAC+ CG+ GH  +DCP+R  +  N    + QR +     QGR  A   T + A+  +
Sbjct: 341 KTGACFACGESGHRIMDCPKRRSETTNTQTNEGQRKKP--RVQGRVFA--LTEKDAEVSN 400

Query: 504 AVVTGTLPVFGHLALVLFDSGSTHSFVSEEFVELAQLEKELLESTLSVSTPAHKLLLATH 563
            VV+GTL +F   A VLFD G+THSFVS  F   A +    L+  +++STP        H
Sbjct: 401 DVVSGTLSLFSREAKVLFDPGATHSFVSCVFARYANVPITPLDVHVTISTPMGDCQFIDH 460

Query: 564 RVKGGGVTIAGRVIEATLIVLSMQDFDVILGMDWLGENRVLIDCETRIVTLRLPSGDSFT 623
             K   + +  +     L+ L M DFD+ILGMDWLG   V IDC  + +  RLP  + F 
Sbjct: 461 VYKSCVIRLCDKEFLVDLLPLEMHDFDLILGMDWLGPYHVSIDCFAKEIIFRLPGEEEFH 520

Query: 624 YKGATSKGVPSVITSLRAKKLIRSGAIAFLAGVTLDNSNKQKPSSVHIVREFVDVFPEDL 683
           ++G   K   ++I+ ++A K+++ G   FLA +  D+ +      + IVREF+DVFPEDL
Sbjct: 521 FQG-NHKSHKALISMVKAMKMLKKGCEGFLAYIVADHPDGACLEDIPIVREFIDVFPEDL 580

Query: 684 SGLPPAKEVNFGIDLEPGTVPISKAPYRMAPAELRELKEQL 699
            GLPP +EV F I+L PGT PISKAPYRMAP EL+ELK QL
Sbjct: 581 PGLPPDREVEFTIELVPGTTPISKAPYRMAPIELKELKVQL 601

BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|985458836|ref|XP_015387942.1| (PREDICTED: uncharacterized protein LOC107177914 [Citrus sinensis])

HSP 1 Score: 322.4 bits (825), Expect = 2.0e-84
Identity = 194/518 (37.45%), Postives = 273/518 (52.70%), Query Frame = 1

Query: 198 GKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKGEAHFWWKGAQKTIVP--QGEF 257
           G  DP+ AE WL+ +E  F  M C     V   +++L+GEA  WW    + I    Q   
Sbjct: 81  GTADPMVAEAWLKQMEKIFVAMGCNDDQRVILASFVLQGEADHWWDAKSRLIRAGLQDAP 140

Query: 258 ITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGDYDLEFNRLARFSPAYVSSEEF 317
           ITW  F +A+  KY+P   R +M+A+FL L QG +SV +Y+ +F  L+RF+   V++E  
Sbjct: 141 ITWELFLEAFHEKYFPERVRHQMEADFLRLTQGTKSVAEYEEQFTALSRFAHTLVANEGS 200

Query: 318 KGERFIAGLREELRGNVASQSSFVYTKALQVATLLDSPRTDKLQLGIAQSSHTAAQGKGA 377
           K  +F+ GLR  ++G +       Y   +  A L +    D L+  + +        +G 
Sbjct: 201 KCRKFLEGLRPNIKGRLTILKINNYADLVDRAILAEK---DILEAQVTRDQRNKKNQQGG 260

Query: 378 YPSHPRTGRPPR----------GRTDW-----RGRAPVRNMTLCPYCRRLHTGECRAGTG 437
               PR G   R          G   W      G    RN  +C +C R H GEC   TG
Sbjct: 261 ----PRNGSSFRQGTHSQKYNGGGNKWDNKGVTGDTAWRNYPICRHCERRHPGECHWKTG 320

Query: 438 ACYRCGQVGHFAVDCPQRNDQRVNLPAVQHQRGQAGQHQQGRAVAHATTARQADPPDAVV 497
           AC+ CG+ GH  +DCP+R  +  N    + QR +     QGR  A   T + A+  + VV
Sbjct: 321 ACFACGESGHRIMDCPKRRSETTNTQTNEGQRKKP--RVQGRVFA--LTEKDAEVSNDVV 380

Query: 498 TGTLPVFGHLALVLFDSGSTHSFVSEEFVELAQLEKELLESTLSVSTPAHKLLLATHRVK 557
           +GTL +F   A VLFD G+THSFVS  F   A +    L+  +++STP        H  K
Sbjct: 381 SGTLSLFSREAKVLFDPGATHSFVSCVFARYANVPITPLDVHVTISTPMGDCQFIDHVYK 440

Query: 558 GGGVTIAGRVIEATLIVLSMQDFDVILGMDWLGENRVLIDCETRIVTLRLPSGDSFTYKG 617
              + +  +     L+ L M DFD+ILGMDWLG   V IDC  + +  RLP  + F ++G
Sbjct: 441 SCVIRLCDKEFLVDLLPLEMHDFDLILGMDWLGPYHVSIDCFAKEIIFRLPGEEEFHFQG 500

Query: 618 ATSKGVPSVITSLRAKKLIRSGAIAFLAGVTLDNSNKQKPSSVHIVREFVDVFPEDLSGL 677
              K   ++I+ ++A K+++ G   FLA +  D+ +      + IVREF+DVFPEDL GL
Sbjct: 501 -NHKSHKALISMVKAMKMLKKGCEGFLAYIVADHPDGACLEDIPIVREFIDVFPEDLPGL 560

Query: 678 PPAKEVNFGIDLEPGTVPISKAPYRMAPAELRELKEQL 699
           PP +EV F I+L PGT PISKAPYRMAP EL+ELK QL
Sbjct: 561 PPDREVEFTIELVPGTTPISKAPYRMAPIELKELKVQL 586

BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|702252073|ref|XP_010064348.1| (PREDICTED: uncharacterized protein LOC104451368 [Eucalyptus grandis])

HSP 1 Score: 320.1 bits (819), Expect = 9.7e-84
Identity = 197/569 (34.62%), Postives = 285/569 (50.09%), Query Frame = 1

Query: 163 SNQSTGQGGKDSGTMTVESRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCP 222
           + + TG G   SGT          F++ KPP+FDG K DP+AAE W++ I+  F     P
Sbjct: 8   AKELTGDGMTGSGTFA-------HFRKAKPPTFDG-KADPLAAERWIKKIDGIFEDEEVP 67

Query: 223 PKYEVHCGTYMLKGEAHFWWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEF 282
              +V   T  L+GEA FWW G +  +  +   I+W  FK  +  +++P + + KM+ +F
Sbjct: 68  EDRKVKFATQYLEGEAEFWWDGMKPNLGGRDVIISWEDFKKVFNAQFFPKSFQAKMKGDF 127

Query: 283 LALKQGDRSVGDYDLEFNRLARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTK 342
           + + QG  +V +Y + FN+L+RF+   V++EE K   F+ GLR E+   +A      Y  
Sbjct: 128 VHVSQGGSTVLEYSVRFNQLSRFAEHLVANEEDKANHFLGGLRPEINSALAPFVLTTYKD 187

Query: 343 ALQVATLLD----------SPRTDKLQLGIAQSSHTAAQGKGAYPSHPRTGRPPRGRTDW 402
            L+ A  ++          +P+  + +    Q SHT   G+    S P   + P      
Sbjct: 188 VLERAIKVEQNILKHGTQGTPQPKRFKPTNVQGSHTDDSGRRRGFSRPGQFKNPS----- 247

Query: 403 RGRAPVRNMTLCPYCRRLHTGECRAGTGACYRCGQVGHFAVDCPQRND------------ 462
                  N   C  C   H GEC    G C+ CG+ GH   DCP R +            
Sbjct: 248 -------NQGPCNTCGNYHHGECYRKMGVCFSCGKAGHMLRDCPTRRNPPIGNRSCNLCG 307

Query: 463 ----------QRVNLPAV-QHQRGQAGQHQQGRAVAHATTARQADPPDAVVTGTLPVFGH 522
                     +R N P V + Q  Q  Q   G+  A   T   A   +AVV G + +  H
Sbjct: 308 RQGHLAHQCFRRRNTPFVGRPQENQQRQSTSGKVFA--MTKEDAAASNAVVAGNISIASH 367

Query: 523 LALVLFDSGSTHSFVSEEFVELAQLEKELLESTLSVSTPAHKLLLATHRVKGGGVTIAGR 582
            A  LFD G+THSF+S EF +   +  + LE  L V TP    L+  H  K   + I   
Sbjct: 368 CAYALFDPGATHSFISTEFAKKLDVLPDPLECELCVDTPTGDFLVGHHVFKRCVIQINNV 427

Query: 583 VIEATLIVLSMQDFDVILGMDWLGENRVLIDCETRIVTLRLPSGDSFTYKGATSKGVPSV 642
            +   L+ L+++DFDVI+GMDWL  NR ++DC ++ V  RL +   F++ G+     P +
Sbjct: 428 EMPVDLVELNIRDFDVIIGMDWLSTNRAIVDCFSKKVIFRLSNQPEFSFSGSCQNTSPRL 487

Query: 643 ITSLRAKKLIRSGAIAFLAGVTLDNSNKQKPSSVHIVREFVDVFPEDLSGLPPAKEVNFG 699
           I++L+ +KL+R G   +LA V   +    K   V +VREF  VFPEDL GLP  +E+ F 
Sbjct: 488 ISALQVRKLLRKGCYGYLACVKDTSKVIVKLEDVPVVREFPSVFPEDLPGLPLDREIEFC 547

BLAST of CmoCh13G003450 vs. NCBI nr
Match: gi|731340581|ref|XP_010681479.1| (PREDICTED: uncharacterized protein LOC104896426 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 305.1 bits (780), Expect = 3.2e-79
Identity = 194/541 (35.86%), Postives = 285/541 (52.68%), Query Frame = 1

Query: 181 SRYLRDFQRHKPPSFDGGKMDPIAAENWLEAIETAFHFMNCPPKYEVHCGTYMLKGEAHF 240
           S   + F  HKPP++DG K DP   E WL  +E  F    CP K++V+   + LKG+A  
Sbjct: 75  SNMFKRFSAHKPPTYDG-KPDPTEFEEWLNGMEKLFDATQCPDKWKVNFVVFYLKGQADL 134

Query: 241 WWKGAQKTIVPQGEFITWCQFKDAYLHKYYPITARVKMQAEFLALKQGDRSVGDYDLEFN 300
           WWK A++     G    W   K+A  +++YP + +++M++EF+ L+Q   SV +Y ++FN
Sbjct: 135 WWKTAREMQNQPG--FGWEGLKEAMRNQFYPQSLQLQMESEFIHLRQRGMSVLEYAVKFN 194

Query: 301 RLARFSPAYVSSEEFKGERFIAGLREELRGNVASQSSFVYTKALQVATLLDSPRTDKLQL 360
            LARF+P  VS++  +  RF  GL  +L+  +A+  S  Y +    A  ++  R  KL+ 
Sbjct: 195 ELARFAPDLVSTDRQRMNRFEGGLNLDLQERLAANMSKSYQELYDRA--INVERKMKLRK 254

Query: 361 GIAQSSHTAAQGKGAYPSHPRTGRPPRGRTDWRGRAP-VRNMTLCPYCRRL-HTG-ECRA 420
            + ++     +GKG   S     +  +  T + G     R +  C  C +L H   ECRA
Sbjct: 255 DVYENGKR--KGKGQEVSISNVFK--KQNTGFSGNNNGQRQIPRCNICSKLGHVARECRA 314

Query: 421 GTGACYRCGQVGHFAVDCP---QRNDQRVNLPAVQHQRGQ-----------------AGQ 480
           GT  CYRCG+ GH   +CP   ++N+   N   VQ    Q                  G 
Sbjct: 315 GTDQCYRCGKTGHMVKNCPALERKNENTNNRVPVQRNNSQNYGYGRNASNNANRNPPRGP 374

Query: 481 HQQGRAVAHATTARQADPPDAVVTGTLPVFGHLALVLFDSGSTHSFVSEEFVELAQLEKE 540
            Q GR         +AD  D V+TGT PV    A VLFDSG++HSF+S  F      +  
Sbjct: 375 PQAGRVFMMQKEEAEAD--DTVITGTFPVNSVPAYVLFDSGASHSFISTAFSRSLNAKPC 434

Query: 541 LLESTLSVSTPAHKLLLATHRVKGGGVTIAGRVIEATLIVLSMQDFDVILGMDWLGENRV 600
              S +SV+ P  + +L     +   + I G   +  LI   + DFDVILGM+WL + + 
Sbjct: 435 SEFSAMSVTIPNGESILCDVMYRNCPILIGGCEFQVDLIQFELTDFDVILGMNWLSKYKA 494

Query: 601 LIDCETRIVTLRLPSGDSFTYKGATSKGVPSVITSLRAKKLIRSGAIAFLAGVTLDNSNK 660
            I+C    +TLR P G   +Y+    +  P +I+SL+A KL+  G   +L  V      +
Sbjct: 495 DINCLNHEITLRKPDGCKVSYRRRKVQPKPEIISSLKAFKLLSKGHYGYLCSVVDLTKPE 554

Query: 661 QKPSSVHIVREFVDVFPEDLSGLPPAKEVNFGIDLEPGTVPISKAPYRMAPAELRELKEQ 699
              S + IV E+ DVFPE++ G+PP +E++F IDL PG+ PISKAPYRMAPAEL+ELK+Q
Sbjct: 555 PSLSDIPIVCEYPDVFPEEIPGMPPEREIDFSIDLVPGSAPISKAPYRMAPAELQELKKQ 604

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
E5GBB7_CUCME2.6e-10437.46Gag protease polyprotein (Fragment) OS=Cucumis melo subsp. melo PE=4 SV=1[more]
M5X787_PRUPE9.8e-6732.87Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1[more]
Q338U7_ORYSJ8.3e-6634.01Retrotransposon protein, putative, Ty3-gypsy subclass OS=Oryza sativa subsp. jap... [more]
Q8SB47_ORYSJ7.0e-6533.90Putative polyprotein OS=Oryza sativa subsp. japonica GN=OSJNBb0091O09.12 PE=4 SV... [more]
A2I5E5_BETVU7.8e-6433.03Retrotransposon protein OS=Beta vulgaris PE=4 SV=1[more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
gi|307135903|gb|ADN33767.1|3.8e-10437.46gag protease polyprotein [Cucumis melo subsp. melo][more]
gi|985452009|ref|XP_015386531.1|6.1e-8636.32PREDICTED: uncharacterized protein LOC107177356 [Citrus sinensis][more]
gi|985458836|ref|XP_015387942.1|2.0e-8437.45PREDICTED: uncharacterized protein LOC107177914 [Citrus sinensis][more]
gi|702252073|ref|XP_010064348.1|9.7e-8434.62PREDICTED: uncharacterized protein LOC104451368 [Eucalyptus grandis][more]
gi|731340581|ref|XP_010681479.1|3.2e-7935.86PREDICTED: uncharacterized protein LOC104896426 [Beta vulgaris subsp. vulgaris][more]
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR001878Znf_CCHC
IPR005162Retrotrans_gag_dom
IPR013242Retroviral aspartyl protease
IPR021109Peptidase_aspartic_dom_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
molecular_function GO:0008270 zinc ion binding

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003450.1CmoCh13G003450.1mRNA


Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001878Zinc finger, CCHC-typeGENE3DG3DSA:4.10.60.10coord: 414..438
score: 7.
IPR001878Zinc finger, CCHC-typePFAMPF00098zf-CCHCcoord: 421..437
score: 1.
IPR001878Zinc finger, CCHC-typeSMARTSM00343c2hcfinal6coord: 421..437
score: 8.
IPR001878Zinc finger, CCHC-typePROFILEPS50158ZF_CCHCcoord: 422..437
score: 10
IPR001878Zinc finger, CCHC-typeunknownSSF57756Retrovirus zinc finger-like domainscoord: 414..442
score: 1.
IPR005162Retrotransposon gag domainPFAMPF03732Retrotrans_gagcoord: 232..326
score: 1.6
IPR013242Retroviral aspartyl proteasePFAMPF08284RVP_2coord: 464..592
score: 5.8
IPR021109Aspartic peptidase domainunknownSSF50630Acid proteasescoord: 481..580
score: 2.4
NoneNo IPR availablePANTHERPTHR10178GAG/POL/ENV POLYPROTEINcoord: 542..607
score: 2.8E-51coord: 112..317
score: 2.8E-51coord: 636..698
score: 2.8E-51coord: 422..505
score: 2.8
NoneNo IPR availablePANTHERPTHR10178:SF283SUBFAMILY NOT NAMEDcoord: 112..317
score: 2.8E-51coord: 636..698
score: 2.8E-51coord: 422..505
score: 2.8E-51coord: 542..607
score: 2.8

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None