CmoCh13G003400 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003400
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, Ty3-gypsy subclass, putative
LocationCmo_Chr13 : 4358204 .. 4358935 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACGGGCCTATATGGTGGACTTTGCCGGTAGCTGGGACACACACTTGCATCTCATAGAGTTCGCTTATAACAACAGTTATCAAGCGACGTTGGGTATGGCACCTTTTGAGGCCTTATACGGGAAGAAGTGTCGATCCCCATTGTGTTGGGACGAAATGGGAGAACGCAAGTTGTTGGGCCCCGATTTAGTGCAGGCAACTAATGAGGCTATCCAGAAAATAAGGGCTAGAATGCGTACGGCACAAAGCAGACAAAAGAGTTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCCTTAAGGTGGCTCCCATGAAAGGCGTTCTTAGGTTCGGGCGCAAAGGGAAGTTAAGTCCACGCTTCATTGGACCATTTGAGATTTTGGAGCGAGTGGGACAAGTAGCTTACCGGTTGGCCCTACCACCTATACTCTCAGGAGTCCACAATGTGTTCCATGTATCGATGTTGCGACTATACATATCTGACCCATCACATGTGATAGATTTCAAACCTCTACGGTTGGATAAGAGTTTGAACTATGAGGAGGAACCAGTGCAAATTGTGGATAGAAAAGTGAAAACCCTACGTAATCGAGAGATCGCGTTGGTCAAGGTATTATGGCGGAATCACCAACTGGAAGAAGCCACTTGGGAACGAGAGGAGGAAATGATGAGCAAATACCCTGAGCTCTTCAGAGCGAAAAGTAAGTAG

mRNA sequence

ATGTTACGGGCCTATATGGTGGACTTTGCCGGTAGCTGGGACACACACTTGCATCTCATAGAGTTCGCTTATAACAACAGTTATCAAGCGACGTTGGGTATGGCACCTTTTGAGGCCTTATACGGGAAGAAGTGTCGATCCCCATTGTGTTGGGACGAAATGGGAGAACGCAAGTTGTTGGGCCCCGATTTAGTGCAGGCAACTAATGAGGCTATCCAGAAAATAAGGGCTAGAATGCGTACGGCACAAAGCAGACAAAAGAGTTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCCTTAAGGTGGCTCCCATGAAAGGCGTTCTTAGGTTCGGGCGCAAAGGGAAGTTAAGTCCACGCTTCATTGGACCATTTGAGATTTTGGAGCGAGTGGGACAAGTAGCTTACCGGTTGGCCCTACCACCTATACTCTCAGGAGTCCACAATGTGTTCCATGTATCGATGTTGCGACTATACATATCTGACCCATCACATGTGATAGATTTCAAACCTCTACGGTTGGATAAGAGTTTGAACTATGAGGAGGAACCAGTGCAAATTGTGGATAGAAAAGTGAAAACCCTACGTAATCGAGAGATCGCGTTGGTCAAGGTATTATGGCGGAATCACCAACTGGAAGAAGCCACTTGGGAACGAGAGGAGGAAATGATGAGCAAATACCCTGAGCTCTTCAGAGCGAAAAGTAAGTAG

Coding sequence (CDS)

ATGTTACGGGCCTATATGGTGGACTTTGCCGGTAGCTGGGACACACACTTGCATCTCATAGAGTTCGCTTATAACAACAGTTATCAAGCGACGTTGGGTATGGCACCTTTTGAGGCCTTATACGGGAAGAAGTGTCGATCCCCATTGTGTTGGGACGAAATGGGAGAACGCAAGTTGTTGGGCCCCGATTTAGTGCAGGCAACTAATGAGGCTATCCAGAAAATAAGGGCTAGAATGCGTACGGCACAAAGCAGACAAAAGAGTTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCCTTAAGGTGGCTCCCATGAAAGGCGTTCTTAGGTTCGGGCGCAAAGGGAAGTTAAGTCCACGCTTCATTGGACCATTTGAGATTTTGGAGCGAGTGGGACAAGTAGCTTACCGGTTGGCCCTACCACCTATACTCTCAGGAGTCCACAATGTGTTCCATGTATCGATGTTGCGACTATACATATCTGACCCATCACATGTGATAGATTTCAAACCTCTACGGTTGGATAAGAGTTTGAACTATGAGGAGGAACCAGTGCAAATTGTGGATAGAAAAGTGAAAACCCTACGTAATCGAGAGATCGCGTTGGTCAAGGTATTATGGCGGAATCACCAACTGGAAGAAGCCACTTGGGAACGAGAGGAGGAAATGATGAGCAAATACCCTGAGCTCTTCAGAGCGAAAAGTAAGTAG
Homology
[Close]
BLAST of CmoCh13G003400 vs. Swiss-Prot
Match: TF211_SCHPO (Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-11 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-11
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYG-KKCRSPLCWDEMGERKL 60
            +LR        +W  H+ L++ +YNN+  +   M PFE ++      SPL      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT- 1154

Query: 61   LGPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDL-EFEVGDKVFLKVAPMKGVLRF 120
               +  Q T +  Q ++  + T   + K Y D++ +++ EF+ GD V +K     G L  
Sbjct: 1155 --DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH- 1214

Query: 121  GRKGKLSPRFIGPFEILERVGQVAYRLALPPILSGV-HNVFHVSMLRLY 167
             +  KL+P F GPF +L++ G   Y L LP  +  +  + FHVS L  Y
Sbjct: 1215 -KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003400 vs. Swiss-Prot
Match: TF24_SCHPO (Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-4 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-11
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYG-KKCRSPLCWDEMGERKL 60
            +LR        +W  H+ L++ +YNN+  +   M PFE ++      SPL      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT- 1154

Query: 61   LGPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDL-EFEVGDKVFLKVAPMKGVLRF 120
               +  Q T +  Q ++  + T   + K Y D++ +++ EF+ GD V +K     G L  
Sbjct: 1155 --DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH- 1214

Query: 121  GRKGKLSPRFIGPFEILERVGQVAYRLALPPILSGV-HNVFHVSMLRLY 167
             +  KL+P F GPF +L++ G   Y L LP  +  +  + FHVS L  Y
Sbjct: 1215 -KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003400 vs. Swiss-Prot
Match: TF29_SCHPO (Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-11
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYG-KKCRSPLCWDEMGERKL 60
            +LR        +W  H+ L++ +YNN+  +   M PFE ++      SPL      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT- 1154

Query: 61   LGPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDL-EFEVGDKVFLKVAPMKGVLRF 120
               +  Q T +  Q ++  + T   + K Y D++ +++ EF+ GD V +K     G L  
Sbjct: 1155 --DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH- 1214

Query: 121  GRKGKLSPRFIGPFEILERVGQVAYRLALPPILSGV-HNVFHVSMLRLY 167
             +  KL+P F GPF +L++ G   Y L LP  +  +  + FHVS L  Y
Sbjct: 1215 -KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003400 vs. Swiss-Prot
Match: TF28_SCHPO (Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-8 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-11
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYG-KKCRSPLCWDEMGERKL 60
            +LR        +W  H+ L++ +YNN+  +   M PFE ++      SPL      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT- 1154

Query: 61   LGPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDL-EFEVGDKVFLKVAPMKGVLRF 120
               +  Q T +  Q ++  + T   + K Y D++ +++ EF+ GD V +K     G L  
Sbjct: 1155 --DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH- 1214

Query: 121  GRKGKLSPRFIGPFEILERVGQVAYRLALPPILSGV-HNVFHVSMLRLY 167
             +  KL+P F GPF +L++ G   Y L LP  +  +  + FHVS L  Y
Sbjct: 1215 -KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003400 vs. Swiss-Prot
Match: TF27_SCHPO (Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-7 PE=3 SV=1)

HSP 1 Score: 70.1 bits (170), Expect = 3.8e-11
Identity = 49/169 (28.99%), Postives = 82/169 (48.52%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYG-KKCRSPLCWDEMGERKL 60
            +LR        +W  H+ L++ +YNN+  +   M PFE ++      SPL      ++  
Sbjct: 1095 LLRCVCSTHPNTWVDHISLVQQSYNNAIHSATQMTPFEIVHRYSPALSPLELPSFSDKT- 1154

Query: 61   LGPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDL-EFEVGDKVFLKVAPMKGVLRF 120
               +  Q T +  Q ++  + T   + K Y D++ +++ EF+ GD V +K     G L  
Sbjct: 1155 --DENSQETIQVFQTVKEHLNTNNIKMKKYFDMKIQEIEEFQPGDLVMVK-RTKTGFLH- 1214

Query: 121  GRKGKLSPRFIGPFEILERVGQVAYRLALPPILSGV-HNVFHVSMLRLY 167
             +  KL+P F GPF +L++ G   Y L LP  +  +  + FHVS L  Y
Sbjct: 1215 -KSNKLAPSFAGPFYVLQKSGPNNYELDLPDSIKHMFSSTFHVSHLEKY 1257

[Close]
BLAST of CmoCh13G003400 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 390.2 bits (1001), Expect = 1.8e-105
Identity = 182/238 (76.47%), Postives = 220/238 (92.44%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           MLRA  ++F GSWD+HLHL+EFAYNNSYQAT+GMAPFEALYG+ CRSP+CW E+GE++L+
Sbjct: 684 MLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLM 743

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ+TNEAIQKIR+RM TAQSRQKSYADVRR+DLEFEVGDKVFLKVAPMKGVLRF R
Sbjct: 744 GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFER 803

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           +GKLSPRF+GPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D++PL 
Sbjct: 804 RGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLE 863

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELF 239
           +D++L+Y E+PV+++ R VKTLRN++I LVKVLWRNH++EEATWERE++M S+YPELF
Sbjct: 864 IDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921

[Close]
BLAST of CmoCh13G003400 vs. TrEMBL
Match: A5AQU5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015014 PE=4 SV=1)

HSP 1 Score: 336.3 bits (861), Expect = 3.2e-89
Identity = 159/239 (66.53%), Postives = 196/239 (82.01%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           + RA ++D  G+WD HL L+EFAYNNS+QA++GM PFEALYG+KCRSP+CW+++GERKLL
Sbjct: 349 LFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMTPFEALYGRKCRSPICWNDVGERKLL 408

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ T E +  I+ R++T QSR KSYAD RRRDLEFEVGD VFLKV+PMK V+RFGR
Sbjct: 409 GPELVQLTVEKVALIKERLKTTQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKYVMRFGR 468

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           KGKLSPRF+GPFEILERVG +AY++ALPP LS VHNVFHVS LR YI DPSHV++ +P++
Sbjct: 469 KGKLSPRFVGPFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVELEPIQ 528

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELFR 240
           + + L YEE PVQIVD   K LR+  + LVKV W NH + EATWE EEEM  K+P+LF+
Sbjct: 529 IFEDLTYEEVPVQIVDVMNKVLRHAVVKLVKVQWNNHSIREATWELEEEMREKHPQLFQ 587

[Close]
BLAST of CmoCh13G003400 vs. TrEMBL
Match: A5CAD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016917 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 7.1e-89
Identity = 158/239 (66.11%), Postives = 197/239 (82.43%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           +LRA ++D  G+WD HL L+EF+YNNS+QA++GMAPFEALYG+KCRSP+CW+++GERKLL
Sbjct: 56  LLRACILDLQGNWDDHLPLVEFSYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 115

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ T E +  I+ R++ AQSR KSYAD RRRDLEFEVGD VFLKV+PMK V+RFGR
Sbjct: 116 GPELVQLTVEKVALIKERLKAAQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKSVMRFGR 175

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           KGKLSPR +GPFEILERVG +AY++ALPP LS +HNVFHVS LR YI DPSHV++ +P++
Sbjct: 176 KGKLSPRSVGPFEILERVGTLAYKVALPPSLSKIHNVFHVSTLRKYIYDPSHVVELEPIQ 235

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELFR 240
           + + LNYEE  VQIVD   K LR+  + LVKV W NH + EATWE EEEM  K+P+LF+
Sbjct: 236 ISEDLNYEEVSVQIVDVMDKVLRHAVVKLVKVQWSNHSVREATWELEEEMREKHPQLFQ 294

[Close]
BLAST of CmoCh13G003400 vs. TrEMBL
Match: A5BA10_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1)

HSP 1 Score: 335.1 bits (858), Expect = 7.1e-89
Identity = 159/239 (66.53%), Postives = 195/239 (81.59%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           + RA ++D  G+WD HL L+EFAYNNS+QA++GMAPFEALYG+KCRSP+CW+++GERKLL
Sbjct: 737 LFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 796

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ T E +  I+ R++ AQSR KSY D RRRDLEFEVGD VFLKV+PMK V+RFGR
Sbjct: 797 GPELVQLTVEKVALIKERLKAAQSRHKSYVDHRRRDLEFEVGDHVFLKVSPMKSVMRFGR 856

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           KGKLSPRF+G FEILERVG +AY++ALPP LS VHNVFHVS LR YI DPSHV+D +P++
Sbjct: 857 KGKLSPRFVGLFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVDLEPIQ 916

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELFR 240
           + + L YEE PVQIVD   K LR+  + LVKV W NH + EATWE EEEM  K+P+LF+
Sbjct: 917 IFEDLTYEEVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMREKHPQLFQ 975

[Close]
BLAST of CmoCh13G003400 vs. TrEMBL
Match: A0A061EEG7_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV=1)

HSP 1 Score: 329.7 bits (844), Expect = 3.0e-87
Identity = 160/238 (67.23%), Postives = 194/238 (81.51%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
            MLRA ++D    W+ +L L+EFAYNNS+Q ++ MAPFEALYG++CRSP+ W E+GERKLL
Sbjct: 1208 MLRACVIDLGVRWEQYLPLVEFAYNNSFQTSIQMAPFEALYGRRCRSPIGWLEVGERKLL 1267

Query: 61   GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
            GP+LVQ   E I  IR RM TAQSRQKSYAD RRRDLEF+VGD VFLKV+P KGV+RFG+
Sbjct: 1268 GPELVQDATEKIHMIRQRMLTAQSRQKSYADNRRRDLEFQVGDHVFLKVSPTKGVMRFGK 1327

Query: 121  KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
            KGKLSPR+IGPFEILE+VG VAYRLALPP LS +H VFHVSMLR Y  DPSHVI ++ ++
Sbjct: 1328 KGKLSPRYIGPFEILEKVGAVAYRLALPPDLSNIHPVFHVSMLRKYNPDPSHVIRYETIQ 1387

Query: 181  LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELF 239
            L   L YEE+PV I+DR+VK LR++++A VKVLWRNH  EE TWE E+EM +K+P LF
Sbjct: 1388 LQDDLTYEEQPVAILDRQVKKLRSKDVASVKVLWRNHTSEEVTWEAEDEMRTKHPHLF 1445

[Close]
BLAST of CmoCh13G003400 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 390.2 bits (1001), Expect = 2.7e-105
Identity = 182/238 (76.47%), Postives = 220/238 (92.44%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           MLRA  ++F GSWD+HLHL+EFAYNNSYQAT+GMAPFEALYG+ CRSP+CW E+GE++L+
Sbjct: 684 MLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLM 743

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ+TNEAIQKIR+RM TAQSRQKSYADVRR+DLEFEVGDKVFLKVAPMKGVLRF R
Sbjct: 744 GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFER 803

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           +GKLSPRF+GPFEILER+G VAYRLALPP LS VH+VFHVSMLR Y+ DPSHV+D++PL 
Sbjct: 804 RGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLE 863

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELF 239
           +D++L+Y E+PV+++ R VKTLRN++I LVKVLWRNH++EEATWERE++M S+YPELF
Sbjct: 864 IDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921

[Close]
BLAST of CmoCh13G003400 vs. NCBI nr
Match: gi|147856403|emb|CAN80324.1| (hypothetical protein VITISV_015014 [Vitis vinifera])

HSP 1 Score: 336.3 bits (861), Expect = 4.5e-89
Identity = 159/239 (66.53%), Postives = 196/239 (82.01%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           + RA ++D  G+WD HL L+EFAYNNS+QA++GM PFEALYG+KCRSP+CW+++GERKLL
Sbjct: 349 LFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMTPFEALYGRKCRSPICWNDVGERKLL 408

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ T E +  I+ R++T QSR KSYAD RRRDLEFEVGD VFLKV+PMK V+RFGR
Sbjct: 409 GPELVQLTVEKVALIKERLKTTQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKYVMRFGR 468

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           KGKLSPRF+GPFEILERVG +AY++ALPP LS VHNVFHVS LR YI DPSHV++ +P++
Sbjct: 469 KGKLSPRFVGPFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVELEPIQ 528

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELFR 240
           + + L YEE PVQIVD   K LR+  + LVKV W NH + EATWE EEEM  K+P+LF+
Sbjct: 529 IFEDLTYEEVPVQIVDVMNKVLRHAVVKLVKVQWNNHSIREATWELEEEMREKHPQLFQ 587

[Close]
BLAST of CmoCh13G003400 vs. NCBI nr
Match: gi|147807800|emb|CAN71056.1| (hypothetical protein VITISV_016917 [Vitis vinifera])

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 158/239 (66.11%), Postives = 197/239 (82.43%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           +LRA ++D  G+WD HL L+EF+YNNS+QA++GMAPFEALYG+KCRSP+CW+++GERKLL
Sbjct: 56  LLRACILDLQGNWDDHLPLVEFSYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 115

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ T E +  I+ R++ AQSR KSYAD RRRDLEFEVGD VFLKV+PMK V+RFGR
Sbjct: 116 GPELVQLTVEKVALIKERLKAAQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKSVMRFGR 175

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           KGKLSPR +GPFEILERVG +AY++ALPP LS +HNVFHVS LR YI DPSHV++ +P++
Sbjct: 176 KGKLSPRSVGPFEILERVGTLAYKVALPPSLSKIHNVFHVSTLRKYIYDPSHVVELEPIQ 235

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELFR 240
           + + LNYEE  VQIVD   K LR+  + LVKV W NH + EATWE EEEM  K+P+LF+
Sbjct: 236 ISEDLNYEEVSVQIVDVMDKVLRHAVVKLVKVQWSNHSVREATWELEEEMREKHPQLFQ 294

[Close]
BLAST of CmoCh13G003400 vs. NCBI nr
Match: gi|147769978|emb|CAN61139.1| (hypothetical protein VITISV_009489 [Vitis vinifera])

HSP 1 Score: 335.1 bits (858), Expect = 1.0e-88
Identity = 159/239 (66.53%), Postives = 195/239 (81.59%), Query Frame = 1 

Query: 1   MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
           + RA ++D  G+WD HL L+EFAYNNS+QA++GMAPFEALYG+KCRSP+CW+++GERKLL
Sbjct: 737 LFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 796

Query: 61  GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
           GP+LVQ T E +  I+ R++ AQSR KSY D RRRDLEFEVGD VFLKV+PMK V+RFGR
Sbjct: 797 GPELVQLTVEKVALIKERLKAAQSRHKSYVDHRRRDLEFEVGDHVFLKVSPMKSVMRFGR 856

Query: 121 KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
           KGKLSPRF+G FEILERVG +AY++ALPP LS VHNVFHVS LR YI DPSHV+D +P++
Sbjct: 857 KGKLSPRFVGLFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVDLEPIQ 916

Query: 181 LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPELFR 240
           + + L YEE PVQIVD   K LR+  + LVKV W NH + EATWE EEEM  K+P+LF+
Sbjct: 917 IFEDLTYEEVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMREKHPQLFQ 975

[Close]
BLAST of CmoCh13G003400 vs. NCBI nr
Match: gi|848857712|ref|XP_012829796.1| (PREDICTED: uncharacterized protein LOC105950954 [Erythranthe guttata])

HSP 1 Score: 329.7 bits (844), Expect = 4.3e-87
Identity = 152/237 (64.14%), Postives = 202/237 (85.23%), Query Frame = 1 

Query: 1    MLRAYMVDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPLCWDEMGERKLL 60
            MLRA ++DF G+W++ L LIEF+YNNS+Q+++GMAP+EALYG+KC SP+ WDE+GER+LL
Sbjct: 1005 MLRACIMDFGGNWESRLPLIEFSYNNSFQSSIGMAPYEALYGRKCHSPIHWDEVGERRLL 1064

Query: 61   GPDLVQATNEAIQKIRARMRTAQSRQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLRFGR 120
            GP+LVQ T + I+ IR +MRTAQ RQ+ YA+ RRR+LEF+ GD VFLKVAP+KG++RFG+
Sbjct: 1065 GPELVQHTVDIIKNIREKMRTAQDRQQKYANKRRRELEFQAGDHVFLKVAPLKGIMRFGK 1124

Query: 121  KGKLSPRFIGPFEILERVGQVAYRLALPPILSGVHNVFHVSMLRLYISDPSHVIDFKPLR 180
            +GKLSPRFIGPFEIL+R+G  AYRLALPP LS VHNVF VSMLR YI +P+H+++ +PL 
Sbjct: 1125 RGKLSPRFIGPFEILDRIGGQAYRLALPPQLSKVHNVFQVSMLRKYIPNPNHILETEPLD 1184

Query: 181  LDKSLNYEEEPVQIVDRKVKTLRNREIALVKVLWRNHQLEEATWEREEEMMSKYPEL 238
            L  +L++ EEP QI+DRKV+ LRN+EI L K+LW+NH  +E+TWE E+E++S+YPEL
Sbjct: 1185 LSPNLSFTEEPSQILDRKVRKLRNKEIRLAKILWKNHSPDESTWELEDEIVSRYPEL 1241

The following BLAST results are available for this feature:
BLAST of CmoCh13G003400 vs. Swiss-Prot
Match NameE-valueIdentityDescription
TF211_SCHPO3.8e-1128.99Transposon Tf2-11 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
TF24_SCHPO3.8e-1128.99Transposon Tf2-4 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF29_SCHPO3.8e-1128.99Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF28_SCHPO3.8e-1128.99Transposon Tf2-8 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
TF27_SCHPO3.8e-1128.99Transposon Tf2-7 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 248... [more]
BLAST of CmoCh13G003400 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84KB0_CUCME1.8e-10576.47Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5AQU5_VITVI3.2e-8966.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_015014 PE=4 SV=1[more]
A5CAD1_VITVI7.1e-8966.11Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016917 PE=4 SV=1[more]
A5BA10_VITVI7.1e-8966.53Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1[more]
A0A061EEG7_THECC3.0e-8767.23DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_018243 PE=4 SV... [more]
BLAST of CmoCh13G003400 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003400 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|2.7e-10576.47pol protein [Cucumis melo subsp. melo][more]
gi|147856403|emb|CAN80324.1|4.5e-8966.53hypothetical protein VITISV_015014 [Vitis vinifera][more]
gi|147807800|emb|CAN71056.1|1.0e-8866.11hypothetical protein VITISV_016917 [Vitis vinifera][more]
gi|147769978|emb|CAN61139.1|1.0e-8866.53hypothetical protein VITISV_009489 [Vitis vinifera][more]
gi|848857712|ref|XP_012829796.1|4.3e-8764.14PREDICTED: uncharacterized protein LOC105950954 [Erythranthe guttata][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003400.1CmoCh13G003400.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 5..48
score: 1.
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 153..234
score: 1.8
IPR023780Chromo domainPFAMPF00385Chromocoord: 190..238
score: 3.
NoneNo IPR availableunknownCoilCoilcoord: 65..85
scor
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..242
score: 2.0
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 1..242
score: 2.0

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003400Watermelon (97103) v2cmowmbB192
CmoCh13G003400Wax gourdcmowgoB0270
CmoCh13G003400Wax gourdcmowgoB0257
CmoCh13G003400Cucurbita moschata (Rifu)cmocmoB167
CmoCh13G003400Cucumber (Gy14) v1cgycmoB0880
CmoCh13G003400Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003400Cucurbita maxima (Rimu)cmacmoB395
CmoCh13G003400Wild cucumber (PI 183967)cmocpiB208
CmoCh13G003400Cucumber (Chinese Long) v2cmocuB199
CmoCh13G003400Cucumber (Chinese Long) v2cmocuB206
CmoCh13G003400Melon (DHL92) v3.5.1cmomeB189
CmoCh13G003400Watermelon (Charleston Gray)cmowcgB171
CmoCh13G003400Watermelon (97103) v1cmowmB189
CmoCh13G003400Cucurbita pepo (Zucchini)cmocpeB189
CmoCh13G003400Cucurbita pepo (Zucchini)cmocpeB204
CmoCh13G003400Bottle gourd (USVL1VR-Ls)cmolsiB194
CmoCh13G003400Cucumber (Gy14) v2cgybcmoB072
CmoCh13G003400Silver-seed gourdcarcmoB0059
CmoCh13G003400Silver-seed gourdcarcmoB0675
CmoCh13G003400Cucumber (Chinese Long) v3cmocucB0239