CmoCh13G003390 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003390
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, Ty3-gypsy subclass, putative
LocationCmo_Chr13 : 4354156 .. 4355258 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTACGAGCCTGTATGTTGGACTTTGCCGGTAGCTGGGACACACACCTGCATCTCATAGAGTTCGCTTATAACAACAGTTATCAAGCGACGTTGGGTATGGCACCGTTTGAGGCCTTATATGGGAAGAAGTGTCGATCCCCAGTGTGTTGGGACGAAGTGGGAGAACGCAAGTTGTTGGGCTCCGATTTAGTGCAAGCAACTAATGAGGCTATCCAGAAAATAAGGGCTAGAATGCTTACGGCATAAAGCAGGCAAAAGAGTTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCCTTAAGGTGGCTCCCATGAAAGGCGTTCTTAGGTTCGGGCGCAAAGGGAAGTTAAGCCTACGCTTCATTGGACCATTTGAGATTTTGGAGCGAGTGGGACAAGTAGCTTACCGGTTGGCCTTACCACCTATACTCTCAGGAGTCCCAATGTGTTCCATGTATCGATGGTGCGACTATACATATCTGACCCATCATATGTGATAGATTTCAAACCTCTACGGTTGGATAAGAGTTTGAACTATGAAGAGGAACCAGTGCAAATAATGGATAGAGAAGTGAAAACCCTACGTAATCGAGAGATCGTGTTGGTCAAGGTATTATGGCGAAATCACCAGCTGGAAGAAGCCACTTGGGAACGAGAGGAGGACATGATGAGCAGATACCCTGAGCTCTTCAGAGCGGAAAGTAAGTAGCACAAACCTTATGTATTTAAGTGAAGCTTTCGAGGACGAAAGTTTCTTTTTGGGGGAATATTGTAAGGCCCACGTTTTGGGCCCACGACCCAATAAAAAAAAAAAATAAATAAATAAACCTAAGGTTCAATAGGAGGAAACCCATTGCCCCAGCCGCCACCCTTCCTTCTCTTTTCTTGTTTTTGTTTCACATTTCTCCCTTCAGCCACGGCCACCCAATGGTCCGGCCCCGCAACCGATTGTTTCCGCACCCCTTCTCATATCAGAAAACATCCGCCCAGCACCACATCGCCGCCGCAAGGGAACGACATCGTCGTTGCCCAAACCGACCTCAAGAGGTTTAGACGTAGCAAAGGTTCAACGCCTACGTAG

mRNA sequence

ATGTTACGAGCCTGTATGTTGGACTTTGCCGGTAGCTGGGACACACACCTGCATCTCATAGAGTTCGCTTATAACAACAGTTATCAAGCGACGTTGGGTATGGCACCGTTTGAGGCCTTATATGGGAAGAAGTGTCGATCCCCAGTGTGTTGGGACGAAGTGGGAGAACGCAAGCAAAAGAGTTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCCTTAAGGTGGCTCCCATGAAAGGCGTTCTTAGCTTACCGGTTGGCCTTACCACCTATACTCTCAGGAGTCCCAATGTGTTCCATGTATCGATGGTGCGACTATACATATCTGACCCATCATATGTGATAGATTTCAAACCTCTACGGTTGGATAAGAGTTTGAACTATGAAGAGGAACCAGTGCAAATAATGGATAGAGAAGTGAAAACCCTACGTAATCGAGAGATCGTGTTGGTCAAGGTATTATGGCGAAATCACCAGCTGGAAGAAGCCACTTGGGAACGAGAGGAGGACATGATGAGCAGATACCCTGAGCTCTTCAGAGCGGAAACCACGGCCACCCAATGGTCCGGCCCCGCAACCGATTGTTTCCGCACCCCTTCTCATATCAGAAAACATCCGCCCAGCACCACATCGCCGCCGCAAGGGAACGACATCGTCGTTGCCCAAACCGACCTCAAGAGGTTTAGACGTAGCAAAGGTTCAACGCCTACGTAG

Coding sequence (CDS)

ATGTTACGAGCCTGTATGTTGGACTTTGCCGGTAGCTGGGACACACACCTGCATCTCATAGAGTTCGCTTATAACAACAGTTATCAAGCGACGTTGGGTATGGCACCGTTTGAGGCCTTATATGGGAAGAAGTGTCGATCCCCAGTGTGTTGGGACGAAGTGGGAGAACGCAAGCAAAAGAGTTATGCAGATGTGAGACGAAGAGATTTGGAATTTGAGGTGGGAGACAAAGTATTCCTTAAGGTGGCTCCCATGAAAGGCGTTCTTAGCTTACCGGTTGGCCTTACCACCTATACTCTCAGGAGTCCCAATGTGTTCCATGTATCGATGGTGCGACTATACATATCTGACCCATCATATGTGATAGATTTCAAACCTCTACGGTTGGATAAGAGTTTGAACTATGAAGAGGAACCAGTGCAAATAATGGATAGAGAAGTGAAAACCCTACGTAATCGAGAGATCGTGTTGGTCAAGGTATTATGGCGAAATCACCAGCTGGAAGAAGCCACTTGGGAACGAGAGGAGGACATGATGAGCAGATACCCTGAGCTCTTCAGAGCGGAAACCACGGCCACCCAATGGTCCGGCCCCGCAACCGATTGTTTCCGCACCCCTTCTCATATCAGAAAACATCCGCCCAGCACCACATCGCCGCCGCAAGGGAACGACATCGTCGTTGCCCAAACCGACCTCAAGAGGTTTAGACGTAGCAAAGGTTCAACGCCTACGTAG
Homology
[Close]
BLAST of CmoCh13G003390 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 265.4 bits (677), Expect = 6.9e-68
Identity = 136/238 (57.14%), Postives = 165/238 (69.33%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           MLRAC L+F GSWD+HLHL+EFAYNNSYQAT+GMAPFEALYG+ CRSPVCW EVGE++  
Sbjct: 684 MLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLM 743

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSLP- 120
                                    QKSYADVRR+DLEFEVGDKVFLKVAPMKGVL    
Sbjct: 744 GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFER 803

Query: 121 -----------------VGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            +G   Y L  P       +VFHVSM+R Y+ DPS+V+D++PL 
Sbjct: 804 RGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLE 863

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELF 187
           +D++L+Y E+PV+++ R VKTLRN++I LVKVLWRNH++EEATWERE+DM SRYPELF
Sbjct: 864 IDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921

[Close]
BLAST of CmoCh13G003390 vs. TrEMBL
Match: A5BA10_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1)

HSP 1 Score: 219.5 bits (558), Expect = 4.3e-54
Identity = 115/239 (48.12%), Postives = 146/239 (61.09%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           + RAC+LD  G+WD HL L+EFAYNNS+QA++GMAPFEALYG+KCRSP+CW++VGERK  
Sbjct: 737 LFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 796

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSL-- 120
                                     KSY D RRRDLEFEVGD VFLKV+PMK V+    
Sbjct: 797 GPELVQLTVEKVALIKERLKAAQSRHKSYVDHRRRDLEFEVGDHVFLKVSPMKSVMRFGR 856

Query: 121 ----------------PVGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            VG   Y +  P       NVFHVS +R YI DPS+V+D +P++
Sbjct: 857 KGKLSPRFVGLFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVDLEPIQ 916

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELFR 188
           + + L YEE PVQI+D   K LR+  + LVKV W NH + EATWE EE+M  ++P+LF+
Sbjct: 917 IFEDLTYEEVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMREKHPQLFQ 975

[Close]
BLAST of CmoCh13G003390 vs. TrEMBL
Match: A0A0V0IPG6_SOLCH (Putative DNA/RNA polymerases superfamily protein-like OS=Solanum chacoense PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.7e-54
Identity = 119/240 (49.58%), Postives = 151/240 (62.92%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGER--- 60
           MLRAC+LDF GSWD +L L EFAYNNS+Q+++ MAP+EALYG++CRSP+ W EVGE    
Sbjct: 201 MLRACILDFGGSWDAYLPLAEFAYNNSFQSSIQMAPYEALYGRRCRSPIGWFEVGEANVL 260

Query: 61  ------------------------KQKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSL-- 120
                                   +QKSYAD RRRDL F VGDKVFL+V+PMKGV+    
Sbjct: 261 GPDLVQEAVDKVQLIRQRLLTAQSRQKSYADRRRRDLRFTVGDKVFLRVSPMKGVMRFGK 320

Query: 121 ----------------PVGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            VG   Y L  P        VFHVSM+R YISD S+V++   + 
Sbjct: 321 RGKLSPRYIGPYEILDRVGGVAYRLALPPKMSFIHPVFHVSMLRKYISDSSHVLEAPTIP 380

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELFRA 189
           +D++L YEEEPV I+D++V+ LR++EIV VKVLWRNH  EEATWE E+DM  +YP LF++
Sbjct: 381 IDENLTYEEEPVAIVDKQVRRLRSKEIVSVKVLWRNHTTEEATWELEKDMRDKYPLLFQS 440

[Close]
BLAST of CmoCh13G003390 vs. TrEMBL
Match: A5CAD1_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016917 PE=4 SV=1)

HSP 1 Score: 219.2 bits (557), Expect = 5.7e-54
Identity = 115/239 (48.12%), Postives = 148/239 (61.92%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           +LRAC+LD  G+WD HL L+EF+YNNS+QA++GMAPFEALYG+KCRSP+CW++VGERK  
Sbjct: 56  LLRACILDLQGNWDDHLPLVEFSYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 115

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSL-- 120
                                     KSYAD RRRDLEFEVGD VFLKV+PMK V+    
Sbjct: 116 GPELVQLTVEKVALIKERLKAAQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKSVMRFGR 175

Query: 121 ----------------PVGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            VG   Y +  P       NVFHVS +R YI DPS+V++ +P++
Sbjct: 176 KGKLSPRSVGPFEILERVGTLAYKVALPPSLSKIHNVFHVSTLRKYIYDPSHVVELEPIQ 235

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELFR 188
           + + LNYEE  VQI+D   K LR+  + LVKV W NH + EATWE EE+M  ++P+LF+
Sbjct: 236 ISEDLNYEEVSVQIVDVMDKVLRHAVVKLVKVQWSNHSVREATWELEEEMREKHPQLFQ 294

[Close]
BLAST of CmoCh13G003390 vs. TrEMBL
Match: A0A061E5E3_THECC (DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1)

HSP 1 Score: 218.8 bits (556), Expect = 7.4e-54
Identity = 109/237 (45.99%), Postives = 149/237 (62.87%), Query Frame = 1 

Query: 1    MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
            MLRAC++DF GSWD HL L+EFAYNNS+Q+++GMAP+EALYG+KCR+P+CWDEVGERK  
Sbjct: 1281 MLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYGRKCRTPLCWDEVGERKLV 1340

Query: 61   -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSLP- 120
                                     QK+Y+D RR+DLEFEV DKVFLKV+P KGV+    
Sbjct: 1341 NVELIDLTNDKVKVIRERLKTAQDRQKNYSDKRRKDLEFEVDDKVFLKVSPWKGVIRFAK 1400

Query: 121  -----------------VGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                             +G   Y L  P       N FHVSM++ Y+ DPS++++  P+ 
Sbjct: 1401 RGKLNPRYIGPFHIIERIGPVAYRLELPPELDRIHNAFHVSMLKKYVPDPSHILETPPIE 1460

Query: 181  LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPEL 186
            L + L +E +P++I+DR+ + LRN+ I +VKVLW+N ++EE TWE E  M ++YP L
Sbjct: 1461 LHEDLKFEVQPIRILDRKDRVLRNKSIPMVKVLWKNARMEEMTWEVESQMRNQYPHL 1517

[Close]
BLAST of CmoCh13G003390 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 265.4 bits (677), Expect = 9.9e-68
Identity = 136/238 (57.14%), Postives = 165/238 (69.33%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           MLRAC L+F GSWD+HLHL+EFAYNNSYQAT+GMAPFEALYG+ CRSPVCW EVGE++  
Sbjct: 684 MLRACALEFPGSWDSHLHLMEFAYNNSYQATIGMAPFEALYGRCCRSPVCWGEVGEQRLM 743

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSLP- 120
                                    QKSYADVRR+DLEFEVGDKVFLKVAPMKGVL    
Sbjct: 744 GPELVQSTNEAIQKIRSRMHTAQSRQKSYADVRRKDLEFEVGDKVFLKVAPMKGVLRFER 803

Query: 121 -----------------VGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            +G   Y L  P       +VFHVSM+R Y+ DPS+V+D++PL 
Sbjct: 804 RGKLSPRFVGPFEILERIGPVAYRLALPPSLSTVHDVFHVSMLRKYVPDPSHVVDYEPLE 863

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELF 187
           +D++L+Y E+PV+++ R VKTLRN++I LVKVLWRNH++EEATWERE+DM SRYPELF
Sbjct: 864 IDENLSYVEQPVEVLARGVKTLRNKQIPLVKVLWRNHRVEEATWEREDDMRSRYPELF 921

[Close]
BLAST of CmoCh13G003390 vs. NCBI nr
Match: gi|698448627|ref|XP_009772753.1| (PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris])

HSP 1 Score: 228.8 bits (582), Expect = 1.0e-56
Identity = 118/239 (49.37%), Postives = 151/239 (63.18%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           MLRAC+++F GSWD HL LIEFAYNNSYQ+++ M P+EALYG+KCR+P+CW+ VGERK  
Sbjct: 441 MLRACIIEFKGSWDKHLALIEFAYNNSYQSSIDMPPYEALYGRKCRTPLCWNVVGERKFV 500

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSLP- 120
                                    QKSYAD++RR++E +VGDKVFLKV+P K ++    
Sbjct: 501 GPEIVQQTEDKVKIIKDRLKISSDRQKSYADLKRREIEHQVGDKVFLKVSPWKKIMRFGQ 560

Query: 121 -----------------VGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            +GL  Y L  P       NVFH+ M+R Y SDPS+V+  + + 
Sbjct: 561 KGKLSHRFIGPYEILERIGLVAYNLALPPELGKIHNVFHIYMLRKYRSDPSHVLPIESIE 620

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELFR 188
           ++  L YEEEP+QI+ RE+K LRN+ I LVKVLWRNH  EEATWEREEDM  +YP LFR
Sbjct: 621 VNPDLTYEEEPIQILAREIKELRNKRIPLVKVLWRNHSGEEATWEREEDMRVQYPHLFR 679

[Close]
BLAST of CmoCh13G003390 vs. NCBI nr
Match: gi|147769978|emb|CAN61139.1| (hypothetical protein VITISV_009489 [Vitis vinifera])

HSP 1 Score: 219.5 bits (558), Expect = 6.2e-54
Identity = 115/239 (48.12%), Postives = 146/239 (61.09%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           + RAC+LD  G+WD HL L+EFAYNNS+QA++GMAPFEALYG+KCRSP+CW++VGERK  
Sbjct: 737 LFRACILDLQGNWDDHLPLVEFAYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 796

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSL-- 120
                                     KSY D RRRDLEFEVGD VFLKV+PMK V+    
Sbjct: 797 GPELVQLTVEKVALIKERLKAAQSRHKSYVDHRRRDLEFEVGDHVFLKVSPMKSVMRFGR 856

Query: 121 ----------------PVGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            VG   Y +  P       NVFHVS +R YI DPS+V+D +P++
Sbjct: 857 KGKLSPRFVGLFEILERVGTLAYKVALPPSLSKVHNVFHVSTLRKYIYDPSHVVDLEPIQ 916

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELFR 188
           + + L YEE PVQI+D   K LR+  + LVKV W NH + EATWE EE+M  ++P+LF+
Sbjct: 917 IFEDLTYEEVPVQIVDMMDKVLRHAVVKLVKVQWSNHSIREATWELEEEMREKHPQLFQ 975

[Close]
BLAST of CmoCh13G003390 vs. NCBI nr
Match: gi|147807800|emb|CAN71056.1| (hypothetical protein VITISV_016917 [Vitis vinifera])

HSP 1 Score: 219.2 bits (557), Expect = 8.1e-54
Identity = 115/239 (48.12%), Postives = 148/239 (61.92%), Query Frame = 1 

Query: 1   MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
           +LRAC+LD  G+WD HL L+EF+YNNS+QA++GMAPFEALYG+KCRSP+CW++VGERK  
Sbjct: 56  LLRACILDLQGNWDDHLPLVEFSYNNSFQASIGMAPFEALYGRKCRSPICWNDVGERKLL 115

Query: 61  -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSL-- 120
                                     KSYAD RRRDLEFEVGD VFLKV+PMK V+    
Sbjct: 116 GPELVQLTVEKVALIKERLKAAQSRHKSYADRRRRDLEFEVGDHVFLKVSPMKSVMRFGR 175

Query: 121 ----------------PVGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                            VG   Y +  P       NVFHVS +R YI DPS+V++ +P++
Sbjct: 176 KGKLSPRSVGPFEILERVGTLAYKVALPPSLSKIHNVFHVSTLRKYIYDPSHVVELEPIQ 235

Query: 181 LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPELFR 188
           + + LNYEE  VQI+D   K LR+  + LVKV W NH + EATWE EE+M  ++P+LF+
Sbjct: 236 ISEDLNYEEVSVQIVDVMDKVLRHAVVKLVKVQWSNHSVREATWELEEEMREKHPQLFQ 294

[Close]
BLAST of CmoCh13G003390 vs. NCBI nr
Match: gi|590693615|ref|XP_007044383.1| (DNA/RNA polymerases superfamily protein [Theobroma cacao])

HSP 1 Score: 218.8 bits (556), Expect = 1.1e-53
Identity = 109/237 (45.99%), Postives = 149/237 (62.87%), Query Frame = 1 

Query: 1    MLRACMLDFAGSWDTHLHLIEFAYNNSYQATLGMAPFEALYGKKCRSPVCWDEVGERK-- 60
            MLRAC++DF GSWD HL L+EFAYNNS+Q+++GMAP+EALYG+KCR+P+CWDEVGERK  
Sbjct: 1281 MLRACVIDFIGSWDRHLPLVEFAYNNSFQSSIGMAPYEALYGRKCRTPLCWDEVGERKLV 1340

Query: 61   -------------------------QKSYADVRRRDLEFEVGDKVFLKVAPMKGVLSLP- 120
                                     QK+Y+D RR+DLEFEV DKVFLKV+P KGV+    
Sbjct: 1341 NVELIDLTNDKVKVIRERLKTAQDRQKNYSDKRRKDLEFEVDDKVFLKVSPWKGVIRFAK 1400

Query: 121  -----------------VGLTTYTLRSP-------NVFHVSMVRLYISDPSYVIDFKPLR 180
                             +G   Y L  P       N FHVSM++ Y+ DPS++++  P+ 
Sbjct: 1401 RGKLNPRYIGPFHIIERIGPVAYRLELPPELDRIHNAFHVSMLKKYVPDPSHILETPPIE 1460

Query: 181  LDKSLNYEEEPVQIMDREVKTLRNREIVLVKVLWRNHQLEEATWEREEDMMSRYPEL 186
            L + L +E +P++I+DR+ + LRN+ I +VKVLW+N ++EE TWE E  M ++YP L
Sbjct: 1461 LHEDLKFEVQPIRILDRKDRVLRNKSIPMVKVLWKNARMEEMTWEVESQMRNQYPHL 1517

The following BLAST results are available for this feature:
BLAST of CmoCh13G003390 vs. Swiss-Prot
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003390 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84KB0_CUCME6.9e-6857.14Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
A5BA10_VITVI4.3e-5448.12Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009489 PE=4 SV=1[more]
A0A0V0IPG6_SOLCH5.7e-5449.58Putative DNA/RNA polymerases superfamily protein-like OS=Solanum chacoense PE=4 ... [more]
A5CAD1_VITVI5.7e-5448.12Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016917 PE=4 SV=1[more]
A0A061E5E3_THECC7.4e-5445.99DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV... [more]
BLAST of CmoCh13G003390 vs. TAIR10
Match NameE-valueIdentityDescription
BLAST of CmoCh13G003390 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|9.9e-6857.14pol protein [Cucumis melo subsp. melo][more]
gi|698448627|ref|XP_009772753.1|1.0e-5649.37PREDICTED: uncharacterized protein LOC104223093 [Nicotiana sylvestris][more]
gi|147769978|emb|CAN61139.1|6.2e-5448.12hypothetical protein VITISV_009489 [Vitis vinifera][more]
gi|147807800|emb|CAN71056.1|8.1e-5448.12hypothetical protein VITISV_016917 [Vitis vinifera][more]
gi|590693615|ref|XP_007044383.1|1.1e-5345.99DNA/RNA polymerases superfamily protein [Theobroma cacao][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR012337RNaseH-like_sf
IPR016197Chromo-like_dom_sf
IPR023780Chromo_domain
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0008150 biological_process
cellular_component GO:0005575 cellular_component
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003390.1CmoCh13G003390.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 6..48
score: 1.
IPR016197Chromo domain-likeunknownSSF54160Chromo domain-likecoord: 134..186
score: 7.4
IPR023780Chromo domainPFAMPF00385Chromocoord: 138..187
score: 4.
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 1..186
score: 1.1
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 1..186
score: 1.1

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003390Cucumber (Gy14) v1cgycmoB0880
CmoCh13G003390Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003390Cucurbita maxima (Rimu)cmacmoB395
CmoCh13G003390Wild cucumber (PI 183967)cmocpiB208
CmoCh13G003390Cucumber (Chinese Long) v2cmocuB199
CmoCh13G003390Cucumber (Chinese Long) v2cmocuB206
CmoCh13G003390Melon (DHL92) v3.5.1cmomeB189
CmoCh13G003390Watermelon (Charleston Gray)cmowcgB171
CmoCh13G003390Watermelon (97103) v1cmowmB189
CmoCh13G003390Cucurbita pepo (Zucchini)cmocpeB189
CmoCh13G003390Cucurbita pepo (Zucchini)cmocpeB204
CmoCh13G003390Bottle gourd (USVL1VR-Ls)cmolsiB194
CmoCh13G003390Cucumber (Gy14) v2cgybcmoB072
CmoCh13G003390Silver-seed gourdcarcmoB0059
CmoCh13G003390Silver-seed gourdcarcmoB0675
CmoCh13G003390Cucumber (Chinese Long) v3cmocucB0239
CmoCh13G003390Watermelon (97103) v2cmowmbB192
CmoCh13G003390Wax gourdcmowgoB0270
CmoCh13G003390Wax gourdcmowgoB0257
CmoCh13G003390Cucurbita moschata (Rifu)cmocmoB167