CmoCh13G003370 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003370
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Unknown protein
Location	Cmo_Chr13 : 4330423 .. 4332026 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCTCGGGCGCCAAGTACTCGTGTGTACCAACGAACGACATCGACCTTGCCTCCGTAGGCTCTGCAACGAGCTCTGGCAATGGCGTTACCTGGTTTCCTATTTCAATCTTGGGTTTCCTATCCTTCTTTGACTTGCTAGAGAAAAGCCTGGGAGAGAAGCACATGGTGGGAACTACACAGGATGGCTGGATGCAGGAAGGTTGGATACAAGCCGGTTGAGCACAATAAACTGAATTCTTTCTCAACGCCTCGGACTCCGAACATGAGCCCTTAACCAACGTTGGACTAACAGCACATCTTAAGGAAAGATCAAAATCTGAAAGCATTATGTGTCCGTCCTCCCTCACGAGAACATTCTCGGGCTTAAGGTCCCGGTATATGATCCCGAGCATGTGAAGATACTCAAGTGCTAGGAGGACCTCTGCTACATAAAATCTGCATCAAAAACCATATGCTTATAAGCTTTATGCAGGCAAAGAAACATGAATGTATAGTGATTAAGTTCGAGGGCGACGAACATACTTCACGGCCTGTTCGGGAAAATGCTTCCCGGGCTGTCTCTGCCTTAGAGTGTGCAAGTCTCCCCCAGGGCAGAACTCCATCACCAAGCATGAGAACTTATCAGTTTCGAAATGAGTATACAATGTAGGCAGGAATGGATGATCAAGAGATTGCAGTATTTCTCGTTCGGTCTGAGCACGAAGCAACTTCTTTCGACTCGCTAGAGACCCTTTATCCATGACCTTCATTGCAAAGTAACATTTAGTACCGCTCAACTCCGACAAGTAGACGCTTCCGATATCGCCACAACCTAGTCTCTTCAACAGTCTAAAATGGCCTAATCCCAAAATCCCATCCCTTGCACGGACAGCTTGGATGGCCTCCCATCTCAAGTCATTCGACTTGTGAGGCTTACTGATGCTACTACTAAAGCTGCTACAGCTGCTTTCATCGCTGATATCGCTGCTCGTGCTACCCCGACACACGCTGCTCTTCCCACTCTCAACCATCTCCACACAGTTACTAATCTTACCACTTCCACTGCTCTTAGCAACACTGTTCGTATCCTTCCCACTCTCACATTCTGATGTCTTCTTTTCAGGTTCCACAGAGTCCTCTGCTACACCCCGAGTCCCGGTAAGCGCAGGATCTCGCTGGGTCAATGTGATCTCTTTGGTGCTTGATGAATCACTCAAAGTACACTGATTCAAGGATCTCTGCGTGGAGTTCAATACATCTCCAGAGATAAGTGGATCAGTTGCAGAAGGTTTGGAAGCCGATTTTGAGGCCATTAGAGGTAAGAAAGAGTTGGATTAAAGCAAATCAGATTTGAGAAAATTCATCGAGCAGCACACAATATGAAGAACACTCCTGCCTTCGAATGATGACCTGAAAACTGCATCAAAATGAAATATATATATATATATATATAGAGATGAAACAACATAGAAGAAACAGAAGATTCAAAGGGTAACAAGGAAACCCCAGATCTTGAAATGGAAACCCACAAGCTTCTTCTTCAGTGCAAAGAACAGATCCGTGGGGGAGAAAACGCAACCCCAGAAGCCAAAACCAGAAGAAATGAAAGAAGAGCAAGATGA

mRNA sequence

ATGATCTCGGGCGCCAAGTACTCGTGTGTACCAACGAACGACATCGACCTTGCCTCCGTAGGCTCTGCAACGAGCTCTGGCAATGGCGTTACCTGGTTTCCTATTTCAATCTTGGGTTTCCTATCCTTCTTTGACTTGCTAGAGAAAAGCCTGGGAGAGAAGCACATGGCAAAGAAACATGAATGTATAGTGATTAAGTTCGAGGGCGACGAACATACTTCACGGCCTGTTCGGGAAAATGCTTCCCGGGCTGTCTCTGCCTTAGAGTGTGCAAGTCTCCCCCAGGGCAGAACTCCATCACCAAGCATGAGAACTTATCAGTTTCGAAATGAGTATACAATCTTGGATGGCCTCCCATCTCAAGTCATTCGACTTGTGAGGCTTACTGATGCTACTACTAAAGCTGCTACAGCTGCTTTCATCGCTGATATCGCTGCTCGTGCTACCCCGACACACGCTGCTCTTCCCACTCTCAACCATCTCCACACAGTTACTAATCTTACCACTTCCACTGCTCTTAGCAACACTGTTCGTTCCACAGAGTCCTCTGCTACACCCCGAGTCCCGGATCTCTGCGTGGAGTTCAATACATCTCCAGAGATAAGTGGATCAGTTGCAGAAGGTTTGGAAGCCGATTTTGAGGCCATTAGAGAAGAAACAGAAGATTCAAAGGGTAACAAGGAAACCCCAGATCTTGAAATGGAAACCCACAAGCTTCTTCTTCAGTGCAAAGAACAGATCCGTGGGGGAGAAAACGCAACCCCAGAAGCCAAAACCAGAAGAAATGAAAGAAGAGCAAGATGA

Coding sequence (CDS)

ATGATCTCGGGCGCCAAGTACTCGTGTGTACCAACGAACGACATCGACCTTGCCTCCGTAGGCTCTGCAACGAGCTCTGGCAATGGCGTTACCTGGTTTCCTATTTCAATCTTGGGTTTCCTATCCTTCTTTGACTTGCTAGAGAAAAGCCTGGGAGAGAAGCACATGGCAAAGAAACATGAATGTATAGTGATTAAGTTCGAGGGCGACGAACATACTTCACGGCCTGTTCGGGAAAATGCTTCCCGGGCTGTCTCTGCCTTAGAGTGTGCAAGTCTCCCCCAGGGCAGAACTCCATCACCAAGCATGAGAACTTATCAGTTTCGAAATGAGTATACAATCTTGGATGGCCTCCCATCTCAAGTCATTCGACTTGTGAGGCTTACTGATGCTACTACTAAAGCTGCTACAGCTGCTTTCATCGCTGATATCGCTGCTCGTGCTACCCCGACACACGCTGCTCTTCCCACTCTCAACCATCTCCACACAGTTACTAATCTTACCACTTCCACTGCTCTTAGCAACACTGTTCGTTCCACAGAGTCCTCTGCTACACCCCGAGTCCCGGATCTCTGCGTGGAGTTCAATACATCTCCAGAGATAAGTGGATCAGTTGCAGAAGGTTTGGAAGCCGATTTTGAGGCCATTAGAGAAGAAACAGAAGATTCAAAGGGTAACAAGGAAACCCCAGATCTTGAAATGGAAACCCACAAGCTTCTTCTTCAGTGCAAAGAACAGATCCGTGGGGGAGAAAACGCAACCCCAGAAGCCAAAACCAGAAGAAATGAAAGAAGAGCAAGATGA

Homology

[Close]

BLAST of CmoCh13G003370 vs. TrEMBL
Match: T1LK88_TRIUA (Uncharacterized protein OS=Triticum urartu PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 1.9e-10
Identity = 43/89 (48.31%), Postives = 55/89 (61.80%), Query Frame = 1


Query: 1  MISGAKYSCVPTNDIDLASVGSATSSGNGVTWFPISILGFLSFFDLLEKSLGEKHMAKKH 60
          +ISGAKYSCVPTNDID AS+GSA SSG+G TW   S  GF SFFD  EK+ G KH+    
Sbjct: 17 IISGAKYSCVPTNDIDRASLGSAMSSGHGRTWLTTSGFGFRSFFD-FEKNRGPKHVV--- 76

Query: 61 ECIVIKFEGDEHTSRPVRENASRAVSALE 90
                  G  H    +++ ++ +VS L+
Sbjct: 77 --------GAVHDGCIMQDGSAASVSGLD 93

[Close]

BLAST of CmoCh13G003370 vs. TrEMBL
Match: A0A0A9LWL9_ARUDO (Uncharacterized protein OS=Arundo donax PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 1.6e-09
Identity = 36/56 (64.29%), Postives = 39/56 (69.64%), Query Frame = 1


Query: 1  MISGAKYSCVPTNDIDLASVGSATSSGNGVTWFPISILGFLSFFDLLEKSLGEKHM 57
          MISGAKYSCVPTNDID AS+GSA SSG G+ W   S  G  SF DL EK  G K +
Sbjct: 1  MISGAKYSCVPTNDIDRASLGSAMSSGQGLIWVATSGFGLRSFLDLEEKKCGPKQV 56

[Close]

BLAST of CmoCh13G003370 vs. TrEMBL
Match: A0A151TVM9_CAJCA (Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_010337 PE=4 SV=1)

HSP 1 Score: 68.6 bits (166), Expect = 1.4e-08
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1  MISGAKYSCVPTNDIDLASVGSATSSGNGVTWFPISILGFLSFFDLLEKSLGEKH 56
          MISGA+YSCVPTN++DLASVGSATS GN +TW   S   FL+ F ++ ++LG KH
Sbjct: 16 MISGARYSCVPTNELDLASVGSATSCGNDLTWVARSTFNFLA-FAVVGRNLGLKH 69

[Close]

BLAST of CmoCh13G003370 vs. TrEMBL
Match: A0A0L9V1J1_PHAAN (Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g261200 PE=4 SV=1)

HSP 1 Score: 67.4 bits (163), Expect = 3.0e-08
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 1   MISGAKYSCVPTNDIDLASVGSATSSGNGVTWFPISILG--FLSFFDLLEKSLGEKH 56
           MI GAK SCVPT DIDLA VGSA SSG GVTW   S  G  FLSF D L++    KH
Sbjct: 340 MIFGAKSSCVPTKDIDLAFVGSAISSGRGVTWLCTSFFGLDFLSFLDFLDRKRSVKH 396

[Close]

BLAST of CmoCh13G003370 vs. NCBI nr
Match: gi|1012359911|gb|KYP71095.1| (hypothetical protein KK1_010337, partial [Cajanus cajan])

HSP 1 Score: 68.6 bits (166), Expect = 1.9e-08
Identity = 34/55 (61.82%), Postives = 43/55 (78.18%), Query Frame = 1


Query: 1  MISGAKYSCVPTNDIDLASVGSATSSGNGVTWFPISILGFLSFFDLLEKSLGEKH 56
          MISGA+YSCVPTN++DLASVGSATS GN +TW   S   FL+ F ++ ++LG KH
Sbjct: 16 MISGARYSCVPTNELDLASVGSATSCGNDLTWVARSTFNFLA-FAVVGRNLGLKH 69

[Close]

BLAST of CmoCh13G003370 vs. NCBI nr
Match: gi|920705683|gb|KOM48908.1| (hypothetical protein LR48_Vigan07g261200 [Vigna angularis])

HSP 1 Score: 67.4 bits (163), Expect = 4.3e-08
Identity = 36/57 (63.16%), Postives = 38/57 (66.67%), Query Frame = 1


Query: 1   MISGAKYSCVPTNDIDLASVGSATSSGNGVTWFPISILG--FLSFFDLLEKSLGEKH 56
           MI GAK SCVPT DIDLA VGSA SSG GVTW   S  G  FLSF D L++    KH
Sbjct: 340 MIFGAKSSCVPTKDIDLAFVGSAISSGRGVTWLCTSFFGLDFLSFLDFLDRKRSVKH 396

The following BLAST results are available for this feature:

BLAST of CmoCh13G003370 vs. Swiss-Prot


Match Name	E-value	Identity	Description

BLAST of CmoCh13G003370 vs. TrEMBL


Match Name	E-value	Identity	Description
T1LK88_TRIUA	1.9e-10	48.31	Uncharacterized protein OS=Triticum urartu PE=4 SV=1	[more]
A0A0A9LWL9_ARUDO	1.6e-09	64.29	Uncharacterized protein OS=Arundo donax PE=4 SV=1	[more]
A0A151TVM9_CAJCA	1.4e-08	61.82	Uncharacterized protein (Fragment) OS=Cajanus cajan GN=KK1_010337 PE=4 SV=1	[more]
A0A0L9V1J1_PHAAN	3.0e-08	63.16	Uncharacterized protein OS=Phaseolus angularis GN=LR48_Vigan07g261200 PE=4 SV=1	[more]

BLAST of CmoCh13G003370 vs. TAIR10


Match Name	E-value	Identity	Description

BLAST of CmoCh13G003370 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|1012359911\|gb\|KYP71095.1\|	1.9e-08	61.82	hypothetical protein KK1_010337, partial [Cajanus cajan]	[more]
gi\|920705683\|gb\|KOM48908.1\|	4.3e-08	63.16	hypothetical protein LR48_Vigan07g261200 [Vigna angularis]	[more]

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0008150	biological_process
cellular_component	GO:0005575	cellular_component
molecular_function	GO:0003674	molecular_function

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003370.1	CmoCh13G003370.1	mRNA

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003370	Silver-seed gourd	carcmoB0059
CmoCh13G003370	Silver-seed gourd	carcmoB0675
CmoCh13G003370	Cucumber (Chinese Long) v3	cmocucB0239
CmoCh13G003370	Watermelon (97103) v2	cmowmbB192
CmoCh13G003370	Wax gourd	cmowgoB0270
CmoCh13G003370	Wax gourd	cmowgoB0257
CmoCh13G003370	Cucurbita moschata (Rifu)	cmocmoB167
CmoCh13G003370	Cucumber (Gy14) v1	cgycmoB0880
CmoCh13G003370	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003370	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003370	Wild cucumber (PI 183967)	cmocpiB208
CmoCh13G003370	Cucumber (Chinese Long) v2	cmocuB199
CmoCh13G003370	Cucumber (Chinese Long) v2	cmocuB206
CmoCh13G003370	Melon (DHL92) v3.5.1	cmomeB189
CmoCh13G003370	Watermelon (Charleston Gray)	cmowcgB171
CmoCh13G003370	Watermelon (97103) v1	cmowmB189
CmoCh13G003370	Cucurbita pepo (Zucchini)	cmocpeB189
CmoCh13G003370	Cucurbita pepo (Zucchini)	cmocpeB204
CmoCh13G003370	Bottle gourd (USVL1VR-Ls)	cmolsiB194
CmoCh13G003370	Cucumber (Gy14) v2	cgybcmoB072