CmoCh13G003280 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003280
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
Description(Pectin lyase-like superfamily protein) (Polygalacturonase, putative)
LocationCmo_Chr13 : 4089083 .. 4089633 (+)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCTATTATTGTTAGATTTTACCGTCGATGCTCAATCTAGTGCCGATGTTGTTTTTCCTTTGAAAAGATATGGTAACATAGTGCCTGGTACTGACATCACGAAGGTAAATATACAGTATGAACAGCAATATTATCACGAGTTGAGTTGATTAATTGTTTGCTAATTTTTGTTACTTGTGACATGTAGGCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAATGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCGCATAAATTGTGCCCAACTCCCCATTGTAAGCAATATTCCTTCAGCTTTCCTTCTCAATCTCGGGAATCTTGTTGTTTTTAGGCGTCTTCTCTAA

mRNA sequence

ATGCTATTATTGTTAGATTTTACCGTCGATGCTCAATCTAGTGCCGATGTTGTTTTTCCTTTGAAAAGATATGGTAACATAGTGCCTGGTACTGACATCACGAAGGCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAATGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCGCATAAATTGTGCCCAACTCCCCATTGTAAGCAATATTCCTTCAGCTTTCCTTCTCAATCTCGGGAATCTTGTTGTTTTTAGGCGTCTTCTCTAA

Coding sequence (CDS)

ATGCTATTATTGTTAGATTTTACCGTCGATGCTCAATCTAGTGCCGATGTTGTTTTTCCTTTGAAAAGATATGGTAACATAGTGCCTGGTACTGACATCACGAAGGCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAATGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCGCATAAATTGTGCCCAACTCCCCATTGTAAGCAATATTCCTTCAGCTTTCCTTCTCAATCTCGGGAATCTTGTTGTTTTTAGGCGTCTTCTCTAA
Homology
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BLAST of CmoCh13G003280 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 6.8e-22
Identity = 50/99 (50.51%), Postives = 62/99 (62.63%), Query Frame = 1 

Query: 32  DITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA---PKS 91
           D T+AL  AWK+AC S   S I++P G F V     +GPC S I  QL GTL+A   P  
Sbjct: 1   DSTQALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSK 60

Query: 92  LQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCRIN 128
           ++G  WI   +ID LT+ G GVFDGQGK+AW +NDC  N
Sbjct: 61  IKGLGWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKN 99

[Close]
BLAST of CmoCh13G003280 vs. Swiss-Prot
Match: PGLR_TOBAC (Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-21
Identity = 52/133 (39.10%), Postives = 76/133 (57.14%), Query Frame = 1 

Query: 3   LLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNV 62
           L+L F      S   VF + +YG      DI++AL NA+K+AC S   S IVIP G F +
Sbjct: 11  LVLLFLAHFGESQTGVFDITKYG-ANSNADISEALLNAFKEACQSTSPSTIVIPKGTFTM 70

Query: 63  KEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAW 122
            +   +GPC SP++ Q+  TL+A   P  L+   W+T  ++D+ T+SG G+ DGQ  AAW
Sbjct: 71  NQVKLEGPCKSPLELQIQATLKAPSDPSQLKVGEWLTVNKLDQFTMSGGGILDGQAAAAW 130

Query: 123 KKNDCRINCAQLP 133
           +    +  C +LP
Sbjct: 131 ECKQSK-KCNKLP 141

[Close]
BLAST of CmoCh13G003280 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-21
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1 

Query: 14  SADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCN- 73
           S+  VF +  YG    G DI++A+  AWK AC S   S ++IP G +N+ E   +GPC  
Sbjct: 5   SSGSVFNVNDYGAKGAG-DISQAVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKG 64

Query: 74  SPIDFQLGGTLQAP---KSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCRIN 128
           S I FQ+ G ++AP      + + W++F RID LT+SG G  DGQG+ AW KN+C  N
Sbjct: 65  SKIGFQIDGVVKAPADPSKFKSDGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKN 121

[Close]
BLAST of CmoCh13G003280 vs. Swiss-Prot
Match: PGLR_MEDSA (Polygalacturonase OS=Medicago sativa PE=2 SV=1)

HSP 1 Score: 100.5 bits (249), Expect = 1.7e-20
Identity = 49/119 (41.18%), Postives = 71/119 (59.66%), Query Frame = 1 

Query: 7   FTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGI 66
           F  D  ++   V  + ++G   P +DI +AL +AW +AC S  ++ IVIP G + +    
Sbjct: 13  FIADFCAAQSGVLDISKFGG-KPNSDIGQALTSAWNEACASTTAAKIVIPAGTYQLNGIE 72

Query: 67  FKGPCNSPIDFQLGGTLQAPKS---LQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKK 122
            KGPC +PI+ Q+ GT+QAP     ++G   W  F  +D LTLSG+GVFDGQG   +KK
Sbjct: 73  LKGPCKAPIELQVDGTIQAPADPSVIKGTEQWFKFLYMDHLTLSGKGVFDGQGATVYKK 130

[Close]
BLAST of CmoCh13G003280 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 99.8 bits (247), Expect = 2.9e-20
Identity = 50/147 (34.01%), Postives = 81/147 (55.10%), Query Frame = 1 

Query: 2   LLLLDFTVDAQSSADVVFPLKRYGNIVPG-TDITKALANAWKDACTSNRSSAIVIPGGIF 61
           +LLL F   ++  +D    + ++G    G TD++K   +AWK+AC S   S +VIP G +
Sbjct: 13  VLLLLFISASKVQSDAFDVVAKFGAKADGKTDLSKPFLDAWKEACASVTPSTVVIPKGTY 72

Query: 62  NVKEGIFKGPCNSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEGVFDGQGKA 121
            + +   +GPC +PI+  + GT+QA   P + +  NW+ F  ++   + G G+FDGQG  
Sbjct: 73  LLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWVRFYSVENFKMFGGGIFDGQGSI 132

Query: 122 AWKKNDCRINCAQLPIVSNIPSAFLLN 145
           A++KN C     +  +  NI   FL N
Sbjct: 133 AYEKNTCENREFRSKLPVNIRFDFLTN 159

[Close]
BLAST of CmoCh13G003280 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 2.9e-43
Identity = 83/135 (61.48%), Postives = 107/135 (79.26%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIF 60
           ++ LL FT++A+S  D+ F L++YGNIV G D+T+AL +AW DAC S+R SA+VIP G F
Sbjct: 15  LMSLLSFTIEARSHVDI-FSLRKYGNIVSGADVTEALKDAWNDACASDRPSAVVIPKGTF 74

Query: 61  NVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWK 120
            V+EG FKGPC SPI+F++ GTLQAPK   G++WITF  +DR+ LSG GVFDGQGKA W+
Sbjct: 75  KVREGEFKGPCKSPIEFRVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWE 134

Query: 121 KNDC--RINCAQLPI 134
           KNDC  RI+CA+LPI
Sbjct: 135 KNDCHKRIDCAKLPI 148

[Close]
BLAST of CmoCh13G003280 vs. TrEMBL
Match: A0A147BN67_IXORI (Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixodes ricinus PE=3 SV=1)

HSP 1 Score: 128.6 bits (322), Expect = 6.4e-27
Identity = 66/133 (49.62%), Postives = 85/133 (63.91%), Query Frame = 1 

Query: 18  VFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDF 77
           VF +K YG   P  DIT+AL+NAWKDAC +  SS +V+P G + +     KGPC  PI+ 
Sbjct: 2   VFDVKTYG-AKPNADITQALSNAWKDACAAIGSSKVVVPAGTYKLGLVSLKGPCKGPIEV 61

Query: 78  QLGGTLQAPKS---LQGNN-WITFERIDRLTLSGEGVFDGQGKAAWKKNDC--RINCAQL 137
           Q+ GTLQAP      +G++ W+ FERID+ TLSG G FDGQG+ AWK+NDC    NC  L
Sbjct: 62  QVEGTLQAPVDPGYFKGSDGWVVFERIDQFTLSGSGSFDGQGQMAWKQNDCSKTFNCKTL 121

Query: 138 PIVSNIPSAFLLN 145
            +  NI   F+ N
Sbjct: 122 AV--NIRFNFITN 131

[Close]
BLAST of CmoCh13G003280 vs. TrEMBL
Match: E3VSV7_CUCPE (Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1)

HSP 1 Score: 126.7 bits (317), Expect = 2.4e-26
Identity = 67/147 (45.58%), Postives = 91/147 (61.90%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIF 60
           +LL+ + TV A S    VF +  +G   P  D T+ALA+AWK+AC S   S +++P G +
Sbjct: 25  LLLVSNATVGATSG---VFDITTFG-AKPNADATQALADAWKEACASATPSKVLVPKGTY 84

Query: 61  NVKEGIFKGPCNSPIDFQLGGTLQA-PKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAW 120
            + E   KGPC SPI+  + GTLQA P   +G+  +  E ID LTLSG GVFDGQGKA W
Sbjct: 85  QLGESRLKGPCKSPIELLVEGTLQASPTDTEGDGLLVMEYIDHLTLSGTGVFDGQGKAGW 144

Query: 121 KKNDCRI--NCAQLPIVSNIPSAFLLN 145
           +KNDC +   C +LP+  N+   F+ N
Sbjct: 145 EKNDCHLKKECKKLPM--NLKFNFITN 165

[Close]
BLAST of CmoCh13G003280 vs. TrEMBL
Match: A0A058ZTW5_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00665 PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-26
Identity = 65/150 (43.33%), Postives = 92/150 (61.33%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGT-DITKALANAWKDACTSNRSSAIVIPGGI 60
           +LLLL F+    +    VF +  YG    G+ DI++AL +AWK+AC S   + ++IPGG 
Sbjct: 10  LLLLLSFSSSINAQ---VFNVASYGAKGDGSSDISQALLSAWKEACASTTPAKVLIPGGT 69

Query: 61  FNVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQGNNWITFERIDRLTLSGEGVFDGQGK 120
           F + E    GPC +P++F+L GTL+AP      + + W+ F+RID LT+SG G FDGQGK
Sbjct: 70  FALTEVALDGPCKAPVEFELQGTLKAPADPSLFKTDGWVVFQRIDGLTVSGGGTFDGQGK 129

Query: 121 AAWKKNDC--RINCAQLPIVSNIPSAFLLN 145
            AW +NDC    NC  LP  +N+   F+ N
Sbjct: 130 TAWGQNDCAKNTNCRTLP--TNLRFNFVTN 154

[Close]
BLAST of CmoCh13G003280 vs. TrEMBL
Match: A0A0V0I8B6_SOLCH (Putative polygalacturonase-like OS=Solanum chacoense PE=3 SV=1)

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-26
Identity = 58/126 (46.03%), Postives = 83/126 (65.87%), Query Frame = 1 

Query: 11  AQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGP 70
           A +S   VF + ++G   P  DI+KA+ +A+K+AC S  +S I++P G F +K+   +GP
Sbjct: 12  APASQSGVFDVTKFG-ATPNGDISKAILDAFKEACASTSASTIIVPKGTFQMKQVKLEGP 71

Query: 71  CNSPIDFQLGGTLQA---PKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDC-RI 130
           C +P++FQL GTL+A   PK L    W T   +++ TLSG G+FDGQGKAAW +NDC + 
Sbjct: 72  CKAPLEFQLQGTLEASPDPKILPEGEWFTVNYLNQFTLSGTGIFDGQGKAAWAQNDCAKT 131

Query: 131 NCAQLP 133
            CA LP
Sbjct: 132 KCAHLP 136

[Close]
BLAST of CmoCh13G003280 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 7.2e-22
Identity = 47/111 (42.34%), Postives = 66/111 (59.46%), Query Frame = 1 

Query: 26  NIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQA 85
           N  PG+DIT AL  A+ +AC     S ++IP G + + E +  GPC +PI   L GT++A
Sbjct: 29  NSPPGSDITNALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKA 88

Query: 86  PKSLQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR--INCAQLPI 134
             +  G   W+ F  I+   L+G GVFDG+G AAW+ N+C    NC +LPI
Sbjct: 89  DGNANGKEKWVAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPI 139

[Close]
BLAST of CmoCh13G003280 vs. TAIR10
Match: AT1G43090.1 (AT1G43090.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 100.9 bits (250), Expect = 7.2e-22
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1 

Query: 18  VFPLKRYGNIVPG-TDITKALANAWKDACTS-NRSSAIVIPGGIFNVKEGIFKGPCNSPI 77
           VF ++RYG+   G TD   A  + WK ACT  + SS I +P G F +    F GPC +PI
Sbjct: 30  VFNVRRYGSRPDGKTDNANAFTSVWKHACTRISGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 78  DFQLGGTLQAP---KSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDC--RINCAQ 132
           +F + GTL AP   + ++ + WI F  I+ L++SG G  DGQGK +W  NDC    NC +
Sbjct: 90  EFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKNTNCPK 149

[Close]
BLAST of CmoCh13G003280 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 9.5e-22
Identity = 52/119 (43.70%), Postives = 73/119 (61.34%), Query Frame = 1 

Query: 30  GTDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPIDFQLGGTLQAP-KS 89
           G+DIT+AL  A+  AC S+  S +VIP G F + E   +GPC +PI+  L GT++A   +
Sbjct: 32  GSDITQALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNA 91

Query: 90  LQG-NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR--INCAQLPIVSNIPSAFLLN 145
           +QG   W+ F  ID   L+G G FDG+G AAW+ N+C     C +LPI  +I   F+LN
Sbjct: 92  IQGKEKWVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPI--SIRFDFILN 148

[Close]
BLAST of CmoCh13G003280 vs. TAIR10
Match: AT1G78400.1 (AT1G78400.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 9.5e-22
Identity = 53/122 (43.44%), Postives = 69/122 (56.56%), Query Frame = 1 

Query: 18  VFPLKRYGNIVPG-TDITKALANAWKDACTSNRSSAIVIPGGIFNVKEGIFKGPCNSPID 77
           VF ++ YG    G TD T A   AWKDAC       + IP G F +    F GPC S I 
Sbjct: 34  VFDVRSYGARGDGKTDNTMAFTKAWKDACQWKGLPRVYIPFGTFYLGAVAFTGPCKSRIS 93

Query: 78  FQLGGTLQAPK---SLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCR--INCAQL 134
           F + GTL APK   +++ ++WI F  +D LT+SG G+ DGQG  +W  N+CR   NC  L
Sbjct: 94  FIIKGTLLAPKDPNAIKQDSWIIFRYVDYLTVSGGGILDGQGSYSWPLNNCRQTHNCRAL 153

[Close]
BLAST of CmoCh13G003280 vs. TAIR10
Match: AT1G43080.1 (AT1G43080.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 100.5 bits (249), Expect = 9.5e-22
Identity = 52/121 (42.98%), Postives = 71/121 (58.68%), Query Frame = 1 

Query: 18  VFPLKRYGNIVPG-TDITKALANAWKDACTS-NRSSAIVIPGGIFNVKEGIFKGPCNSPI 77
           VF ++RYG+   G TD   A  + WK ACT  + SS I +P G F +    F GPC +PI
Sbjct: 30  VFNVRRYGSRPDGKTDNANAFTSVWKRACTRISGSSKIYVPKGTFYLGGVEFVGPCKNPI 89

Query: 78  DFQLGGTLQAP---KSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKNDC--RINCAQ 132
           +F + GTL AP   + ++ + WI F  I+ L++SG G  DGQGK +W  NDC    NC +
Sbjct: 90  EFVIDGTLLAPANPRDIKQDTWINFRYINNLSISGSGTLDGQGKYSWPLNDCHKNTNCPK 149

[Close]
BLAST of CmoCh13G003280 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 184.1 bits (466), Expect = 1.8e-43
Identity = 82/135 (60.74%), Postives = 106/135 (78.52%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIF 60
           ++ LL FTV+++S  DV+F L++YGNIV G D+T+AL +AW DAC S R SA+VIP G F
Sbjct: 15  LMALLSFTVESRSHVDVIFHLRKYGNIVSGADVTEALKDAWNDACASLRPSAVVIPKGTF 74

Query: 61  NVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWK 120
            V+EG FKGPC SP++ ++ GTLQAPK   G++WITF  +DR+TLSG GVFDGQGKA W+
Sbjct: 75  KVREGEFKGPCKSPVEVRVRGTLQAPKHPHGDSWITFAYVDRMTLSGGGVFDGQGKAGWE 134

Query: 121 KNDC--RINCAQLPI 134
           KNDC   I+CA+LPI
Sbjct: 135 KNDCHKHISCARLPI 149

[Close]
BLAST of CmoCh13G003280 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 183.3 bits (464), Expect = 3.1e-43
Identity = 83/132 (62.88%), Postives = 105/132 (79.55%), Query Frame = 1 

Query: 4   LLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIFNVK 63
           LL FT++A+S  D+ F L++YGNIV G D+T+AL +AW DAC S+R SA+VIP G F V+
Sbjct: 3   LLSFTIEARSHVDI-FSLRKYGNIVSGADVTEALKDAWNDACASDRPSAVVIPKGTFKVR 62

Query: 64  EGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWKKND 123
           EG FKGPC SPI+F++ GTLQAPK   G++WITF  +DR+ LSG GVFDGQGKA W+KND
Sbjct: 63  EGEFKGPCKSPIEFRVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWEKND 122

Query: 124 C--RINCAQLPI 134
           C  RI+CA+LPI
Sbjct: 123 CHKRIDCAKLPI 133

[Close]
BLAST of CmoCh13G003280 vs. NCBI nr
Match: gi|700188231|gb|KGN43464.1| (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 183.0 bits (463), Expect = 4.1e-43
Identity = 83/135 (61.48%), Postives = 107/135 (79.26%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIF 60
           ++ LL FT++A+S  D+ F L++YGNIV G D+T+AL +AW DAC S+R SA+VIP G F
Sbjct: 15  LMSLLSFTIEARSHVDI-FSLRKYGNIVSGADVTEALKDAWNDACASDRPSAVVIPKGTF 74

Query: 61  NVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWK 120
            V+EG FKGPC SPI+F++ GTLQAPK   G++WITF  +DR+ LSG GVFDGQGKA W+
Sbjct: 75  KVREGEFKGPCKSPIEFRVHGTLQAPKHPHGDSWITFAYVDRMRLSGGGVFDGQGKAGWE 134

Query: 121 KNDC--RINCAQLPI 134
           KNDC  RI+CA+LPI
Sbjct: 135 KNDCHKRIDCAKLPI 148

[Close]
BLAST of CmoCh13G003280 vs. NCBI nr
Match: gi|778730075|ref|XP_011659692.1| (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 171.8 bits (434), Expect = 9.5e-40
Identity = 79/135 (58.52%), Postives = 101/135 (74.81%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIF 60
           ++ LL FT+++QS  DV+FPL++YGNI        AL +AW DAC S R SA+VI  GIF
Sbjct: 15  LMSLLSFTIESQSHVDVIFPLRKYGNI--------ALKDAWNDACASVRPSAVVIRDGIF 74

Query: 61  NVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAWK 120
            V+EG FKGPC SPI+ ++ GTLQAPK   G++WITF  +DR+T+SG+GVFDGQGKA W+
Sbjct: 75  KVREGEFKGPCKSPIEIRVRGTLQAPKHPHGDSWITFAYVDRMTISGKGVFDGQGKAGWE 134

Query: 121 KNDC--RINCAQLPI 134
           KNDC  RI+C  LPI
Sbjct: 135 KNDCHKRIDCVNLPI 141

[Close]
BLAST of CmoCh13G003280 vs. NCBI nr
Match: gi|778708564|ref|XP_004149829.2| (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 165.2 bits (417), Expect = 8.9e-38
Identity = 72/119 (60.50%), Postives = 93/119 (78.15%), Query Frame = 1 

Query: 1   MLLLLDFTVDAQSSADVVFPLKRYGNIVPGTDITKALANAWKDACTSNRSSAIVIPGGIF 60
           ++ LL FT++++S  DV+FPL++YGNIV G D+T+AL +AW DAC S   SA+VIP GIF
Sbjct: 15  LMSLLSFTIESRSHIDVIFPLEKYGNIVSGADVTEALKDAWNDACASVHPSAVVIPKGIF 74

Query: 61  NVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWITFERIDRLTLSGEGVFDGQGKAAW 120
            V+EG FKGPC SPI+ ++ GTLQAPK   G++WITF  +DR+TLSG GVFDGQGK  W
Sbjct: 75  KVREGKFKGPCKSPIEIRVRGTLQAPKHPYGDSWITFAYVDRMTLSGGGVFDGQGKEGW 133

The following BLAST results are available for this feature:
BLAST of CmoCh13G003280 vs. Swiss-Prot
Match NameE-valueIdentityDescription
PGLR_OENOR6.8e-2250.51Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1[more]
PGLR_TOBAC7.5e-2139.10Polygalacturonase OS=Nicotiana tabacum GN=PG1 PE=2 SV=1[more]
PGLR2_PLAAC7.5e-2143.22Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1[more]
PGLR_MEDSA1.7e-2041.18Polygalacturonase OS=Medicago sativa PE=2 SV=1[more]
PGLR_GOSHI2.9e-2034.01Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1[more]
BLAST of CmoCh13G003280 vs. TrEMBL
Match NameE-valueIdentityDescription
A0A0A0K3B7_CUCSA2.9e-4361.48Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1[more]
A0A147BN67_IXORI6.4e-2749.62Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixod... [more]
E3VSV7_CUCPE2.4e-2645.58Polygalacturonase OS=Cucurbita pepo GN=PG1 PE=2 SV=1[more]
A0A058ZTW5_EUCGR7.1e-2643.33Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00665 PE=3 SV=1[more]
A0A0V0I8B6_SOLCH7.1e-2646.03Putative polygalacturonase-like OS=Solanum chacoense PE=3 SV=1[more]
BLAST of CmoCh13G003280 vs. TAIR10
Match NameE-valueIdentityDescription
AT5G48140.17.2e-2242.34 Pectin lyase-like superfamily protein[more]
AT1G43090.17.2e-2242.98 Pectin lyase-like superfamily protein[more]
AT3G07820.19.5e-2243.70 Pectin lyase-like superfamily protein[more]
AT1G78400.19.5e-2243.44 Pectin lyase-like superfamily protein[more]
AT1G43080.19.5e-2242.98 Pectin lyase-like superfamily protein[more]
BLAST of CmoCh13G003280 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|659111053|ref|XP_008455553.1|1.8e-4360.74PREDICTED: exopolygalacturonase-like [Cucumis melo][more]
gi|778730103|ref|XP_011659699.1|3.1e-4362.88PREDICTED: exopolygalacturonase-like [Cucumis sativus][more]
gi|700188231|gb|KGN43464.1|4.1e-4361.48hypothetical protein Csa_7G037910 [Cucumis sativus][more]
gi|778730075|ref|XP_011659692.1|9.5e-4058.52PREDICTED: polygalacturonase-like [Cucumis sativus][more]
gi|778708564|ref|XP_004149829.2|8.9e-3860.50PREDICTED: polygalacturonase-like [Cucumis sativus][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000743Glyco_hydro_28
IPR011050Pectin_lyase_fold/virulence
IPR012334Pectin_lyas_fold
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0071555 cell wall organization
biological_process GO:0005982 starch metabolic process
biological_process GO:0005985 sucrose metabolic process
biological_process GO:0005975 carbohydrate metabolic process
cellular_component GO:0005576 extracellular region
molecular_function GO:0004650 polygalacturonase activity
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003280.1CmoCh13G003280.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000743Glycoside hydrolase, family 28PFAMPF00295Glyco_hydro_28coord: 45..133
score: 1.9
IPR011050Pectin lyase fold/virulence factorunknownSSF51126Pectin lyase-likecoord: 18..133
score: 3.45
IPR012334Pectin lyase foldGENE3DG3DSA:2.160.20.10coord: 3..136
score: 5.5
NoneNo IPR availablePANTHERPTHR31375FAMILY NOT NAMEDcoord: 1..144
score: 4.3
NoneNo IPR availablePANTHERPTHR31375:SF37PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATEDcoord: 1..144
score: 4.3

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003280Cucumber (Chinese Long) v3cmocucB0221
CmoCh13G003280Watermelon (97103) v2cmowmbB198
CmoCh13G003280Wax gourdcmowgoB0259
CmoCh13G003280Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003280Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003280Cucurbita maxima (Rimu)cmacmoB395
CmoCh13G003280Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003280Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003280Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003280Cucurbita pepo (Zucchini)cmocpeB204
CmoCh13G003280Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003280Melon (DHL92) v3.6.1cmomedB203