CmoCh13G003260 (gene) Cucurbita moschata (Rifu) | Cucurbit Genomics Database (CuGenDB)

Overview


Name	CmoCh13G003260
Type	gene
Organism	Cucurbita moschata (Cucurbita moschata (Rifu))
Description	Pectin lyase-like superfamily protein
Location	Cmo_Chr13 : 4042928 .. 4043952 (+)

Genome Viewer

Gene Expression

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAAAGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCATAAACGCATAAATTGTGCCCAACTCCCCATTGTAAGCAATATTCCTTCAGCTTTCCTTCTCAATCTCGGGAATCTTGTTGTTTTTAGGCATCTTCTCTAATCTTCTAACATTTTTAATTTGGTAAAGGTTCTTCATTTTCTAGAGGATTATCTTTAACCATTCTAACAAAAAAGAAAAAAAAGAAAAAAGCATGTAAAGGAGTGAAATTCTTTATGAGTTTTCGATTTTATTGGGTTCTGTTAAATTTTTTTGGCTTCCTTACTGATGCTCACAAAATATTATTTGATTATACAAAATGTTTAGAGTTTGAGGTTCAACTTCATCACCAATTCAATCGTGAAGAGAATAACGTCACTTGATAGCAAGAACTTCCATATCAACGTCCTCGGCTGCAACAACCTCACATTCCATAATATCAATATAACTGCACCAGAAAACAGTCCCAACACTGATGGAATACACATCGGTCGATCAAATAGGATCGCAATCACAATGTCCAAAATTGCAACAGGAGATGATTGCATTTCTCTTGGAGATGGAAGCAAACAAATTAACATCACCAACGTGACATGTGGGCCAGGACATGGCGTAAGCATCGGAAGTCTTGGAAGATACACTAACGAAGAACCCGTTGAAGGTGTCATCGTAAATAACTGTAAGCATCGGAAGTCTTGGAAGATACACTAACGAAGAACCCGTTGAAGGTGTCATCGTAAATAACTGCACGATAATTAACACCACTAATGGTGTTAGGA

mRNA sequence

GCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAAAGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCATAAACGCATAAATTGTGCCCAACTCCCCATTAGTTTGAGGTTCAACTTCATCACCAATTCAATCGTGAAGAGAATAACGTCACTTGATAGCAAGAACTTCCATATCAACGTCCTCGGCTGCAACAACCTCACATTCCATAATATCAATATAACTGCACCAGAAAACAGTCCCAACACTGATGGAATACACATCGGTCGATCAAATAGGATCGCAATCACAATGTCCAAAATTGCAACAGGAGATGATTGCATTTCTCTTGGAGATGGAAGCAAACAAATTAACATCACCAACGTGACATGTGGGCCAGGACATGGCGTAAGCATCGGAAGTCTTGGAAGATACACTAACGAAGAACCCGTTGAAGGTGTCATCGTAAATAACTGA

Coding sequence (CDS)

GCTTTAGCAAATGCATGGAAGGATGCATGCACGTCCAATCGTTCTAGTGCGATTGTTATTCCGGGAGGGATATTTAAAGTAAAGGAAGGGATATTTAAAGGACCTTGTAATAGCCCAATTGACTTTCAACTTGGAGGAACATTGCAGGCACCAAAAAGTCTTCAGGGAAATAATTGGATTACTTTTGAACGTATTGATAGATTGACATTATCAGGTGAAGGAGTTTTTGATGGCCAAGGAAAGGCAGCTTGGAAAAAGAATGATTGCCATAAACGCATAAATTGTGCCCAACTCCCCATTAGTTTGAGGTTCAACTTCATCACCAATTCAATCGTGAAGAGAATAACGTCACTTGATAGCAAGAACTTCCATATCAACGTCCTCGGCTGCAACAACCTCACATTCCATAATATCAATATAACTGCACCAGAAAACAGTCCCAACACTGATGGAATACACATCGGTCGATCAAATAGGATCGCAATCACAATGTCCAAAATTGCAACAGGAGATGATTGCATTTCTCTTGGAGATGGAAGCAAACAAATTAACATCACCAACGTGACATGTGGGCCAGGACATGGCGTAAGCATCGGAAGTCTTGGAAGATACACTAACGAAGAACCCGTTGAAGGTGTCATCGTAAATAACTGA

Homology

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BLAST of CmoCh13G003260 vs. Swiss-Prot
Match: PGLR_OENOR (Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1)

HSP 1 Score: 263.8 bits (673), Expect = 1.6e-69
Identity = 128/221 (57.92%), Postives = 157/221 (71.04%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAP---KSLQGN 60
           AL  AWK+AC S   S I++P G F V     +GPC S I  QL GTL+AP     ++G 
Sbjct: 5   ALTTAWKEACASASPSTILVPKGNFAVGLITLEGPCKSSIGLQLQGTLKAPADPSKIKGL 64

Query: 61  NWITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRIN-CAQLPISLRFNFITNSIVKRIT 120
            WI   +ID LT+ G GVFDGQGK+AW +NDCHK    C  L ++LR   +TNSI++ +T
Sbjct: 65  GWINLNKIDLLTIFGGGVFDGQGKSAWVQNDCHKNGPICKTLSMNLRLYAVTNSILRDVT 124

Query: 121 SLDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISL 180
           +LDSKNFH+NV+GC NLTF    I+A E S NTDGIHIGRS+ + I  ++I TGDDCISL
Sbjct: 125 TLDSKNFHVNVIGCKNLTFERFKISAAETSINTDGIHIGRSDGVNIINTEIKTGDDCISL 184

Query: 181 GDGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           GDGSK INITN+TCGPGHG+S+GSLGRY NEE V G+ V N
Sbjct: 185 GDGSKNINITNITCGPGHGISVGSLGRYKNEESVVGIYVKN 225

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BLAST of CmoCh13G003260 vs. Swiss-Prot
Match: PGLR_BRANA (Polygalacturonase OS=Brassica napus PE=2 SV=1)

HSP 1 Score: 243.0 bits (619), Expect = 2.9e-63
Identity = 114/219 (52.05%), Postives = 150/219 (68.49%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPK-SLQGNN- 60
           A+  A+  AC +   S ++IP G FK+ E +  GPC SPI+F L G ++    S QG + 
Sbjct: 38  AVLKAFTSACQAPAPSQVLIPKGDFKLGETVMTGPCKSPIEFTLQGNVKTDGGSTQGKDR 97

Query: 61  WITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSL 120
           W+ FE+I+   L+G G FDG+G AAWK N+CHK   C +LPIS+RF+F+ N+ +K +TSL
Sbjct: 98  WVVFEKINGFKLNGGGTFDGEGNAAWKANNCHKTFECKKLPISVRFDFVDNAEIKDVTSL 157

Query: 121 DSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGD 180
           D+KNFH NV+   N+TF NI I AP  SPNTDGIH+GR   + I  +KIATGDDCIS+GD
Sbjct: 158 DAKNFHFNVISGKNMTFDNIKIIAPAESPNTDGIHLGRCEGVKILNTKIATGDDCISVGD 217

Query: 181 GSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           G K + I  V CGPGHG+S+GSLGRY  E+ V  + V N
Sbjct: 218 GMKNLLIEKVVCGPGHGISVGSLGRYGWEQDVTDITVKN 256

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BLAST of CmoCh13G003260 vs. Swiss-Prot
Match: PGLR_GOSBA (Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-63
Identity = 106/217 (48.85%), Postives = 153/217 (70.51%), Query Frame = 1


Query: 4   NAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAP---KSLQGNNWI 63
           +AWK+AC S   S +VIP G + + +   +GPC +PI+  + GT+QAP    + +  NW+
Sbjct: 51  DAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWV 110

Query: 64  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 123
            F  ++   + G G+FDGQG  A++KN C  R   ++LP+++RF+F+TN++++ ITS DS
Sbjct: 111 RFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFVTNALIQDITSKDS 170

Query: 124 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 183
           K FHINV  C N+T   + I AP+ SPNTDGIH+G+S  + I  S I TGDDCIS+GDG+
Sbjct: 171 KLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGT 230

Query: 184 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           K + I  +TCGPGHG+SIGSLG++ NEEPVEG+ ++N
Sbjct: 231 KNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISN 267

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BLAST of CmoCh13G003260 vs. Swiss-Prot
Match: PGLR2_PLAAC (Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1)

HSP 1 Score: 242.7 bits (618), Expect = 3.8e-63
Identity = 113/219 (51.60%), Postives = 152/219 (69.41%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCN-SPIDFQLGGTLQAP---KSLQG 60
           A+  AWK AC S   S ++IP G + + E   +GPC  S I FQ+ G ++AP      + 
Sbjct: 26  AVMKAWKAACASQGPSTVLIPKGNYNMGEVAMQGPCKGSKIGFQIDGVVKAPADPSKFKS 85

Query: 61  NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRIT 120
           + W++F RID LT+SG G  DGQG+ AW KN+C K  NC    ++LRF+F+ +++V+ IT
Sbjct: 86  DGWVSFYRIDGLTVSGTGTLDGQGQTAWAKNNCDKNPNCKHAAMNLRFDFLKHAMVRDIT 145

Query: 121 SLDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISL 180
           SL+SK FHINVL C ++TF ++ +TAP  S NTDGIH+G S  + IT +KIATGDDCIS+
Sbjct: 146 SLNSKMFHINVLECEDITFQHVTVTAPGTSINTDGIHVGISKGVTITNTKIATGDDCISI 205

Query: 181 GDGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIV 216
           G GS+ + IT V CGPGHG+SIGSLGRY NE+ V G+ V
Sbjct: 206 GPGSQNVTITQVNCGPGHGISIGSLGRYNNEKEVRGITV 244

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BLAST of CmoCh13G003260 vs. Swiss-Prot
Match: PGLR_GOSHI (Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1)

HSP 1 Score: 242.3 bits (617), Expect = 5.0e-63
Identity = 106/217 (48.85%), Postives = 153/217 (70.51%), Query Frame = 1


Query: 4   NAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAP---KSLQGNNWI 63
           +AWK+AC S   S +VIP G + + +   +GPC +PI+  + GT+QAP    + +  NW+
Sbjct: 51  DAWKEACASVTPSTVVIPKGTYLLSKVNLEGPCKAPIEINVQGTIQAPADPSAFKDPNWV 110

Query: 64  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 123
            F  ++   + G G+FDGQG  A++KN C  R   ++LP+++RF+F+TN++++ ITS DS
Sbjct: 111 RFYSVENFKMFGGGIFDGQGSIAYEKNTCENREFRSKLPVNIRFDFLTNALIQDITSKDS 170

Query: 124 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 183
           K FHINV  C N+T   + I AP+ SPNTDGIH+G+S  + I  S I TGDDCIS+GDG+
Sbjct: 171 KLFHINVFACKNITLERLKIEAPDESPNTDGIHMGKSEGVNIIASDIKTGDDCISIGDGT 230

Query: 184 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           K + I  +TCGPGHG+SIGSLG++ NEEPVEG+ ++N
Sbjct: 231 KNMVIKEITCGPGHGISIGSLGKFQNEEPVEGIKISN 267

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BLAST of CmoCh13G003260 vs. TrEMBL
Match: A0A0A0K3B7_CUCSA (Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1)

HSP 1 Score: 356.7 bits (914), Expect = 2.0e-95
Identity = 164/217 (75.58%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWI 60
           AL +AW DAC S+R SA+VIP G FKV+EG FKGPC SPI+F++ GTLQAPK   G++WI
Sbjct: 49  ALKDAWNDACASDRPSAVVIPKGTFKVREGEFKGPCKSPIEFRVHGTLQAPKHPHGDSWI 108

Query: 61  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 120
           TF  +DR+ LSG GVFDGQGKA W+KNDCHKRI+CA+LPISLRF+FITNSIV+RITSLDS
Sbjct: 109 TFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDCAKLPISLRFDFITNSIVRRITSLDS 168

Query: 121 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 180
           KNFH+N+LGCNNLTF  +NI APENSPNTDGIHIGRS  I+I  S+IATGDDCISLGDGS
Sbjct: 169 KNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGS 228

Query: 181 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           K+I + NV CGPGHG+SIGSLG+Y NEEPVEGVIVNN
Sbjct: 229 KRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNN 265

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BLAST of CmoCh13G003260 vs. TrEMBL
Match: A0A147BN67_IXORI (Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixodes ricinus PE=3 SV=1)

HSP 1 Score: 292.4 bits (747), Expect = 4.7e-76
Identity = 136/219 (62.10%), Postives = 169/219 (77.17%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQGN 60
           AL+NAWKDAC +  SS +V+P G +K+     KGPC  PI+ Q+ GTLQAP      +G+
Sbjct: 19  ALSNAWKDACAAIGSSKVVVPAGTYKLGLVSLKGPCKGPIEVQVEGTLQAPVDPGYFKGS 78

Query: 61  N-WITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRIT 120
           + W+ FERID+ TLSG G FDGQG+ AWK+NDC K  NC  L +++RFNFITNS+V+ I 
Sbjct: 79  DGWVVFERIDQFTLSGSGSFDGQGQMAWKQNDCSKTFNCKTLAVNIRFNFITNSLVRDIK 138

Query: 121 SLDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISL 180
           SL+SKNFHIN+LGC N TF ++ ITAP +SPNTDGIHIGRS+ I IT + IATGDDCIS+
Sbjct: 139 SLNSKNFHINLLGCKNFTFQHVTITAPGDSPNTDGIHIGRSSGINITDTNIATGDDCISM 198

Query: 181 GDGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIV 216
           GDGS+ + I  VTCGPGHG+SIGSLG+YTNEEPV G+ V
Sbjct: 199 GDGSQDVTINKVTCGPGHGISIGSLGKYTNEEPVSGIKV 237

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BLAST of CmoCh13G003260 vs. TrEMBL
Match: W9SJQ5_9ROSA (Uncharacterized protein OS=Morus notabilis GN=L484_020043 PE=3 SV=1)

HSP 1 Score: 283.1 bits (723), Expect = 2.8e-73
Identity = 133/219 (60.73%), Postives = 162/219 (73.97%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKS----LQG 60
           AL   WK+AC S   S IV+P G+FKV + +F+GPC +PI+F L GTLQAP        G
Sbjct: 41  ALLTTWKEACASATRSKIVVPKGVFKVTQALFQGPCKAPIEFNLQGTLQAPPVGGGFKGG 100

Query: 61  NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRIT 120
           + WI FE +D LT+SG GVFDGQGK+AW K   H      QLPI+LRF+F+TNS+V+ +T
Sbjct: 101 DTWIGFEHVDFLTVSGNGVFDGQGKSAWGKKCDHTEYCGKQLPINLRFDFVTNSLVQDVT 160

Query: 121 SLDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISL 180
           +LDSK FH+NVLGC N+TFHN ++ APENS NTDGIHIGRS  I I  S I TGDDC+S+
Sbjct: 161 TLDSKQFHVNVLGCKNVTFHNFHVIAPENSVNTDGIHIGRSTDIKILNSIIQTGDDCVSI 220

Query: 181 GDGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIV 216
           GDGSKQI +T VTCGPGHG  IGSLG+Y NE PV+G+ V
Sbjct: 221 GDGSKQIYLTQVTCGPGHGFGIGSLGKYLNELPVQGIFV 259

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BLAST of CmoCh13G003260 vs. TrEMBL
Match: A0A058ZZK4_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00666 PE=3 SV=1)

HSP 1 Score: 281.2 bits (718), Expect = 1.1e-72
Identity = 125/220 (56.82%), Postives = 162/220 (73.64%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQGN 60
           AL +AWK+AC S   + ++IPGG F + E    GPC +P++F+L GTL+AP      + +
Sbjct: 43  ALLSAWKEACASTTPAKVLIPGGTFALTEVALDGPCKAPVEFELQGTLKAPADPSLFKTD 102

Query: 61  NWITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITS 120
            W+ F+ ID LT+SG G FDGQGK AW +NDC K  NC  LP +LRFNF+TN+++  +T+
Sbjct: 103 GWVVFQHIDGLTMSGGGTFDGQGKTAWGQNDCAKNTNCRTLPTNLRFNFVTNALIHDVTT 162

Query: 121 LDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLG 180
           LDSKNF +NVLG  N+TF N ++ AP +S NTDGIHIGRS+ + I  S I TGDDC+SLG
Sbjct: 163 LDSKNFQVNVLGAKNMTFQNFHVNAPADSINTDGIHIGRSDGVNILDSDIKTGDDCVSLG 222

Query: 181 DGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           DGS+QI +  VTCGPGHG+S+GSLG+Y NEEPVEGV V N
Sbjct: 223 DGSRQITVKGVTCGPGHGISVGSLGKYENEEPVEGVFVTN 262

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BLAST of CmoCh13G003260 vs. TrEMBL
Match: A0A059DD70_EUCGR (Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01068 PE=3 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 2.4e-72
Identity = 125/220 (56.82%), Postives = 165/220 (75.00%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKS---LQGN 60
           AL +AWK+AC +  +S +++P G + ++E + +GPC S I+ Q+ GTLQAP     ++ +
Sbjct: 43  ALVSAWKEACAATEASKVLVPAGTYVLREVVLEGPCKSSIEVQVDGTLQAPADPAQMKTD 102

Query: 61  NWITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITS 120
            W+ F  +D LTLSG G FDGQGK AW KNDC+ + +C  LPI++RF+ +TN +VK ITS
Sbjct: 103 GWVAFRGVDLLTLSGSGTFDGQGKTAWTKNDCNLKTDCVTLPINIRFDSVTNGMVKDITS 162

Query: 121 LDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLG 180
           LDSK FH+NVL C NLTF ++ ITAP +SPNTDGIHIGRS  I I  + I TGDDCIS+G
Sbjct: 163 LDSKQFHVNVLNCKNLTFQHVTITAPGDSPNTDGIHIGRSTGINIIDTGIKTGDDCISIG 222

Query: 181 DGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           DGS+Q+ IT VTCGPGHG+S+GSLG+Y NE+PV G+ V N
Sbjct: 223 DGSEQMTITGVTCGPGHGISVGSLGKYPNEQPVTGLHVKN 262

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BLAST of CmoCh13G003260 vs. TAIR10
Match: AT3G07820.1 (AT3G07820.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 254.2 bits (648), Expect = 7.2e-68
Identity = 119/219 (54.34%), Postives = 159/219 (72.60%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQGNN- 60
           AL  A+  AC S+  S +VIP G FK+ E   +GPC +PI+  L GT++A   ++QG   
Sbjct: 38  ALLKAFTSACQSSSPSKVVIPKGEFKLGEIEMRGPCKAPIEVTLQGTVKADGNAIQGKEK 97

Query: 61  WITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSL 120
           W+ F  ID   L+G G FDG+G AAW+ N+CHK   C +LPIS+RF+FI NS ++ I+S+
Sbjct: 98  WVVFGNIDGFKLNGGGAFDGEGNAAWRVNNCHKTFECKKLPISIRFDFILNSEIRDISSI 157

Query: 121 DSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGD 180
           D+KNFHINVLG  N+T +NI I APE+SPNTDGIH+GRS+ + I  S I+TGDDCIS+GD
Sbjct: 158 DAKNFHINVLGAKNMTMNNIKIVAPEDSPNTDGIHLGRSDGVKILNSFISTGDDCISVGD 217

Query: 181 GSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           G K +++  VTCGPGHG+S+GSLGRY +E+ V G+ V N
Sbjct: 218 GMKNLHVEKVTCGPGHGISVGSLGRYGHEQDVSGIKVIN 256

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BLAST of CmoCh13G003260 vs. TAIR10
Match: AT3G07840.1 (AT3G07840.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 253.8 bits (647), Expect = 9.4e-68
Identity = 116/219 (52.97%), Postives = 158/219 (72.15%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQGNN- 60
           AL  A+  AC +  +S +VI  G FK+ E    GPC +P++  L GTL+A  K++QG   
Sbjct: 39  ALLKAFTSACQAPTASKVVITKGEFKLGEIEMTGPCKAPVEINLQGTLKADGKAIQGKER 98

Query: 61  WITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSL 120
           W+ F RI+   L+G G+FDG+G AAW+ N+CHK   C +LPIS+RF+F+ N+ ++ I+S+
Sbjct: 99  WVVFLRINGFKLNGGGIFDGEGNAAWRVNNCHKTFECKKLPISIRFDFVENAEIRDISSI 158

Query: 121 DSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGD 180
           D+KNFHINVLG  N+TF N+ + AP  SPNTDGIH+GRS  + I  SKIATGDDCIS+GD
Sbjct: 159 DAKNFHINVLGAKNMTFDNVKVIAPAESPNTDGIHLGRSEGVKILNSKIATGDDCISVGD 218

Query: 181 GSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           G K +++ NV CGPGHG+S+GSLGRY +E+ V G+ V N
Sbjct: 219 GMKNLHVENVMCGPGHGISVGSLGRYVHEQDVTGITVVN 257

[Close]

BLAST of CmoCh13G003260 vs. TAIR10
Match: AT5G48140.1 (AT5G48140.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 248.4 bits (633), Expect = 3.9e-66
Identity = 113/218 (51.83%), Postives = 156/218 (71.56%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNN-W 60
           AL  A+ +AC     S ++IP G +K+ E +  GPC +PI   L GT++A  +  G   W
Sbjct: 39  ALLKAFNEACQFPTKSTVMIPKGEYKLGEIVMMGPCKAPIRIALLGTVKADGNANGKEKW 98

Query: 61  ITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLD 120
           + F  I+   L+G GVFDG+G AAW+ N+CHK  NC +LPIS+RF+F+T++ ++ ITSLD
Sbjct: 99  VAFRNINGFKLNGGGVFDGEGNAAWRVNNCHKTFNCKKLPISIRFDFVTDAKIRGITSLD 158

Query: 121 SKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDG 180
           +K+FHINV+G  N+TF ++ I AP  SPNTDGIH+GRS+ I I  S I+TGDDC+S+GDG
Sbjct: 159 AKHFHINVIGAKNVTFEDVKIIAPAESPNTDGIHVGRSDGIKIINSFISTGDDCVSVGDG 218

Query: 181 SKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
            K + +  VTCGPGHG+SIGSLGRY++EE V G+ + N
Sbjct: 219 MKNLLVERVTCGPGHGISIGSLGRYSHEENVSGIKIIN 256

[Close]

BLAST of CmoCh13G003260 vs. TAIR10
Match: AT3G07830.1 (AT3G07830.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 247.3 bits (630), Expect = 8.8e-66
Identity = 113/219 (51.60%), Postives = 155/219 (70.78%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAP-KSLQGNN- 60
           AL  A+  AC S     +VIP G FK+ E +  GPC SP++  L GT+ A   S+ G   
Sbjct: 39  ALLRAFTTACQSPTPRKVVIPKGQFKLGEIMMSGPCKSPVEITLLGTVLADGNSIHGKEK 98

Query: 61  WITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSL 120
           W+ F+R+D   L+G G FDG+G AAW+ N+CHK   C +LPIS+RF+F+TN+ ++ I+S+
Sbjct: 99  WVVFQRMDGFRLNGGGTFDGEGNAAWRVNNCHKTFECKKLPISIRFDFVTNAEIRDISSI 158

Query: 121 DSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGD 180
           D+KNFHINV+G  N+TF N+ I AP  SPNTDGIH+GRS  ++I  S+I+TGDDC+S+GD
Sbjct: 159 DAKNFHINVIGAKNMTFDNVKIMAPAESPNTDGIHLGRSVGVSIINSRISTGDDCVSVGD 218

Query: 181 GSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           G   + + NV CGPGHG+S+GSLGRY +E+ V G+ V N
Sbjct: 219 GMVNLLVKNVVCGPGHGISVGSLGRYGHEQDVSGIRVIN 257

[Close]

BLAST of CmoCh13G003260 vs. TAIR10
Match: AT3G07850.1 (AT3G07850.1 Pectin lyase-like superfamily protein)

HSP 1 Score: 236.1 bits (601), Expect = 2.0e-62
Identity = 113/220 (51.36%), Postives = 148/220 (67.27%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNN-- 60
           A A AWK+AC +   S I +P G + V+   FKGPC  P+  +L G  +AP +++     
Sbjct: 88  AFAAAWKEACAAG--STITVPKGEYMVESLEFKGPCKGPVTLELNGNFKAPATVKTTKPH 147

Query: 61  --WITFERIDRLTLSG-EGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRI 120
             WI FE I   TL+G + +FDGQG  AWK NDC K   C  LPI++RF  +TNS +  I
Sbjct: 148 AGWIDFENIADFTLNGNKAIFDGQGSLAWKANDCAKTGKCNSLPINIRFTGLTNSKINSI 207

Query: 121 TSLDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCIS 180
           TS +SK FH+N+L C N+T  +I I AP  S NTDGIHIGRSN + +  +KI TGDDC+S
Sbjct: 208 TSTNSKLFHMNILNCKNITLSDIGIDAPPESLNTDGIHIGRSNGVNLIGAKIKTGDDCVS 267

Query: 181 LGDGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIV 216
           +GDG++ + + NV CGPGHG+SIGSLGRY NE+PV+GV V
Sbjct: 268 IGDGTENLIVENVECGPGHGISIGSLGRYPNEQPVKGVTV 305

[Close]

BLAST of CmoCh13G003260 vs. NCBI nr
Match: gi|778730103|ref|XP_011659699.1| (PREDICTED: exopolygalacturonase-like [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.9e-95
Identity = 164/217 (75.58%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWI 60
           AL +AW DAC S+R SA+VIP G FKV+EG FKGPC SPI+F++ GTLQAPK   G++WI
Sbjct: 34  ALKDAWNDACASDRPSAVVIPKGTFKVREGEFKGPCKSPIEFRVHGTLQAPKHPHGDSWI 93

Query: 61  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 120
           TF  +DR+ LSG GVFDGQGKA W+KNDCHKRI+CA+LPISLRF+FITNSIV+RITSLDS
Sbjct: 94  TFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDCAKLPISLRFDFITNSIVRRITSLDS 153

Query: 121 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 180
           KNFH+N+LGCNNLTF  +NI APENSPNTDGIHIGRS  I+I  S+IATGDDCISLGDGS
Sbjct: 154 KNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGS 213

Query: 181 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           K+I + NV CGPGHG+SIGSLG+Y NEEPVEGVIVNN
Sbjct: 214 KRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNN 250

[Close]

BLAST of CmoCh13G003260 vs. NCBI nr
Match: gi|700188231|gb|KGN43464.1| (hypothetical protein Csa_7G037910 [Cucumis sativus])

HSP 1 Score: 356.7 bits (914), Expect = 2.9e-95
Identity = 164/217 (75.58%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWI 60
           AL +AW DAC S+R SA+VIP G FKV+EG FKGPC SPI+F++ GTLQAPK   G++WI
Sbjct: 49  ALKDAWNDACASDRPSAVVIPKGTFKVREGEFKGPCKSPIEFRVHGTLQAPKHPHGDSWI 108

Query: 61  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 120
           TF  +DR+ LSG GVFDGQGKA W+KNDCHKRI+CA+LPISLRF+FITNSIV+RITSLDS
Sbjct: 109 TFAYVDRMRLSGGGVFDGQGKAGWEKNDCHKRIDCAKLPISLRFDFITNSIVRRITSLDS 168

Query: 121 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 180
           KNFH+N+LGCNNLTF  +NI APENSPNTDGIHIGRS  I+I  S+IATGDDCISLGDGS
Sbjct: 169 KNFHVNILGCNNLTFQGVNIIAPENSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGS 228

Query: 181 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           K+I + NV CGPGHG+SIGSLG+Y NEEPVEGVIVNN
Sbjct: 229 KRIKVNNVICGPGHGISIGSLGKYNNEEPVEGVIVNN 265

[Close]

BLAST of CmoCh13G003260 vs. NCBI nr
Match: gi|659111053|ref|XP_008455553.1| (PREDICTED: exopolygalacturonase-like [Cucumis melo])

HSP 1 Score: 355.9 bits (912), Expect = 5.0e-95
Identity = 164/217 (75.58%), Postives = 189/217 (87.10%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWI 60
           AL +AW DAC S R SA+VIP G FKV+EG FKGPC SP++ ++ GTLQAPK   G++WI
Sbjct: 50  ALKDAWNDACASLRPSAVVIPKGTFKVREGEFKGPCKSPVEVRVRGTLQAPKHPHGDSWI 109

Query: 61  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 120
           TF  +DR+TLSG GVFDGQGKA W+KNDCHK I+CA+LPISLRFNFITNSIV+RITSLDS
Sbjct: 110 TFAYVDRMTLSGGGVFDGQGKAGWEKNDCHKHISCARLPISLRFNFITNSIVRRITSLDS 169

Query: 121 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 180
           KNFH+N+LGCNNLTF  +NI APE+SPNTDGIHIGRS  I+I  S+IATGDDCISLGDGS
Sbjct: 170 KNFHVNILGCNNLTFDGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGS 229

Query: 181 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           K++ ITNVTCGPGHG+SIGSLG+YTNEEPVEGVIV N
Sbjct: 230 KRVKITNVTCGPGHGISIGSLGKYTNEEPVEGVIVKN 266

[Close]

BLAST of CmoCh13G003260 vs. NCBI nr
Match: gi|778730075|ref|XP_011659692.1| (PREDICTED: polygalacturonase-like [Cucumis sativus])

HSP 1 Score: 344.4 bits (882), Expect = 1.5e-91
Identity = 158/217 (72.81%), Postives = 185/217 (85.25%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQGNNWI 60
           AL +AW DAC S R SA+VI  GIFKV+EG FKGPC SPI+ ++ GTLQAPK   G++WI
Sbjct: 42  ALKDAWNDACASVRPSAVVIRDGIFKVREGEFKGPCKSPIEIRVRGTLQAPKHPHGDSWI 101

Query: 61  TFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRITSLDS 120
           TF  +DR+T+SG+GVFDGQGKA W+KNDCHKRI+C  LPISLRF+FITNSIV+ ITSLDS
Sbjct: 102 TFAYVDRMTISGKGVFDGQGKAGWEKNDCHKRIDCVNLPISLRFDFITNSIVRGITSLDS 161

Query: 121 KNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISLGDGS 180
           KNFH+N+LGCNNLTF  +NI APE+SPNTDGIHIGRS  I+I  S+IATGDDCISLGDGS
Sbjct: 162 KNFHVNILGCNNLTFQGVNIIAPEDSPNTDGIHIGRSIGISILKSRIATGDDCISLGDGS 221

Query: 181 KQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           KQ+ + NVTCGPGHG+SIGSLG+YTNEEPV+ V V N
Sbjct: 222 KQVKVANVTCGPGHGISIGSLGKYTNEEPVDDVEVKN 258

[Close]

BLAST of CmoCh13G003260 vs. NCBI nr
Match: gi|694377808|ref|XP_009365183.1| (PREDICTED: exopolygalacturonase-like [Pyrus x bretschneideri])

HSP 1 Score: 295.8 bits (756), Expect = 6.1e-77
Identity = 132/221 (59.73%), Postives = 168/221 (76.02%), Query Frame = 1


Query: 1   ALANAWKDACTSNRSSAIVIPGGIFKVKEGIFKGPCNSPIDFQLGGTLQAPKSLQG---- 60
           AL+ AW DAC S  +S IV+P G +K     FKGPC +PI+FQL GT+QAP+ ++     
Sbjct: 46  ALSKAWTDACASTSASKIVVPSGTYKFVGATFKGPCKAPIEFQLQGTVQAPEHIKELPKE 105

Query: 61  NNWITFERIDRLTLSGEGVFDGQGKAAWKKNDCHKRINCAQLPISLRFNFITNSIVKRIT 120
           + W+ FERID LTLSG G+FDGQG  AWK+NDCHK  NC    ++LRFNF+TNSIV+ IT
Sbjct: 106 DTWVAFERIDGLTLSGGGIFDGQGTTAWKQNDCHKNKNCKSKAVNLRFNFVTNSIVREIT 165

Query: 121 SLDSKNFHINVLGCNNLTFHNINITAPENSPNTDGIHIGRSNRIAITMSKIATGDDCISL 180
           + DSKNFH+N+LGCNNL F +  ++AP+ S NTDGIH+GRS  I IT + I TGDDCIS+
Sbjct: 166 TKDSKNFHVNLLGCNNLAFQHFTVSAPKESVNTDGIHMGRSTEINITDTTIGTGDDCISI 225

Query: 181 GDGSKQINITNVTCGPGHGVSIGSLGRYTNEEPVEGVIVNN 218
           G G+KQ+++TNVTCGPGHG+SIGSLGR  +EEPV G+ + N
Sbjct: 226 GHGTKQLHVTNVTCGPGHGISIGSLGRTEDEEPVSGIFIKN 266

The following BLAST results are available for this feature:

BLAST of CmoCh13G003260 vs. Swiss-Prot


Match Name	E-value	Identity	Description
PGLR_OENOR	1.6e-69	57.92	Exopolygalacturonase (Fragment) OS=Oenothera organensis PE=2 SV=1	[more]
PGLR_BRANA	2.9e-63	52.05	Polygalacturonase OS=Brassica napus PE=2 SV=1	[more]
PGLR_GOSBA	3.8e-63	48.85	Polygalacturonase OS=Gossypium barbadense GN=G9 PE=2 SV=1	[more]
PGLR2_PLAAC	3.8e-63	51.60	Exopolygalacturonase (Fragment) OS=Platanus acerifolia GN=plaa2 PE=1 SV=1	[more]
PGLR_GOSHI	5.0e-63	48.85	Polygalacturonase OS=Gossypium hirsutum GN=G9 PE=2 SV=1	[more]

BLAST of CmoCh13G003260 vs. TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K3B7_CUCSA	2.0e-95	75.58	Uncharacterized protein OS=Cucumis sativus GN=Csa_7G037910 PE=3 SV=1	[more]
A0A147BN67_IXORI	4.7e-76	62.10	Putative polygalacturonase/glycoside hydrolase family protein (Fragment) OS=Ixod...	[more]
W9SJQ5_9ROSA	2.8e-73	60.73	Uncharacterized protein OS=Morus notabilis GN=L484_020043 PE=3 SV=1	[more]
A0A058ZZK4_EUCGR	1.1e-72	56.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_K00666 PE=3 SV=1	[more]
A0A059DD70_EUCGR	2.4e-72	56.82	Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_A01068 PE=3 SV=1	[more]

BLAST of CmoCh13G003260 vs. TAIR10


Match Name	E-value	Identity	Description
AT3G07820.1	7.2e-68	54.34	Pectin lyase-like superfamily protein	[more]
AT3G07840.1	9.4e-68	52.97	Pectin lyase-like superfamily protein	[more]
AT5G48140.1	3.9e-66	51.83	Pectin lyase-like superfamily protein	[more]
AT3G07830.1	8.8e-66	51.60	Pectin lyase-like superfamily protein	[more]
AT3G07850.1	2.0e-62	51.36	Pectin lyase-like superfamily protein	[more]

BLAST of CmoCh13G003260 vs. NCBI nr


Match Name	E-value	Identity	Description
gi\|778730103\|ref\|XP_011659699.1\|	2.9e-95	75.58	PREDICTED: exopolygalacturonase-like [Cucumis sativus]	[more]
gi\|700188231\|gb\|KGN43464.1\|	2.9e-95	75.58	hypothetical protein Csa_7G037910 [Cucumis sativus]	[more]
gi\|659111053\|ref\|XP_008455553.1\|	5.0e-95	75.58	PREDICTED: exopolygalacturonase-like [Cucumis melo]	[more]
gi\|778730075\|ref\|XP_011659692.1\|	1.5e-91	72.81	PREDICTED: polygalacturonase-like [Cucumis sativus]	[more]
gi\|694377808\|ref\|XP_009365183.1\|	6.1e-77	59.73	PREDICTED: exopolygalacturonase-like [Pyrus x bretschneideri]	[more]

Annotated Terms

The following terms have been associated with this gene:

Vocabulary: **INTERPRO**
Term	Definition
IPR000743	Glyco_hydro_28
IPR011050	Pectin_lyase_fold/virulence
IPR012334	Pectin_lyas_fold

Vocabulary: **Molecular Function**
Term	Definition
GO:0004650	polygalacturonase activity

Vocabulary: **Biological Process**
Term	Definition
GO:0005975	carbohydrate metabolic process

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0071555	cell wall organization
biological_process	GO:0005982	starch metabolic process
biological_process	GO:0005985	sucrose metabolic process
biological_process	GO:0005975	carbohydrate metabolic process
cellular_component	GO:0005576	extracellular region
molecular_function	GO:0004650	polygalacturonase activity

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
CmoCh13G003260.1	CmoCh13G003260.1	mRNA

InterPro

Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000743	Glycoside hydrolase, family 28	PFAM	PF00295	Glyco_hydro_28	coord: 10..217 score: 6.0
IPR000743	Glycoside hydrolase, family 28	PROSITE	PS00502	POLYGALACTURONASE	coord: 187..200 scor
IPR011050	Pectin lyase fold/virulence factor	unknown	SSF51126	Pectin lyase-like	coord: 1..217 score: 5.5
IPR012334	Pectin lyase fold	GENE3D	G3DSA:2.160.20.10		coord: 1..217 score: 8.2
None	No IPR available	PANTHER	PTHR31375	FAMILY NOT NAMED	coord: 1..217 score: 7.5E
None	No IPR available	PANTHER	PTHR31375:SF37	PECTIN LYASE-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 1..217 score: 7.5E

Synteny

The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:


Gene	Organism	Block
CmoCh13G003260	Cucurbita pepo (Zucchini)	cmocpeB204
CmoCh13G003260	Cucumber (Gy14) v2	cgybcmoB057
CmoCh13G003260	Melon (DHL92) v3.6.1	cmomedB203
CmoCh13G003260	Cucumber (Chinese Long) v3	cmocucB0221
CmoCh13G003260	Watermelon (97103) v2	cmowmbB198
CmoCh13G003260	Wax gourd	cmowgoB0259
CmoCh13G003260	Cucumber (Gy14) v1	cgycmoB0594
CmoCh13G003260	Cucurbita maxima (Rimu)	cmacmoB218
CmoCh13G003260	Cucurbita maxima (Rimu)	cmacmoB395
CmoCh13G003260	Wild cucumber (PI 183967)	cmocpiB192
CmoCh13G003260	Cucumber (Chinese Long) v2	cmocuB188
CmoCh13G003260	Watermelon (Charleston Gray)	cmowcgB179