CmoCh13G003200 (gene) Cucurbita moschata (Rifu)

Overview
NameCmoCh13G003200
Typegene
OrganismCucurbita moschata (Cucurbita moschata (Rifu))
DescriptionRetrotransposon protein, putative, Ty3-gypsy subclass
LocationCmo_Chr13 : 3524170 .. 3525276 (-)
Genome Viewer
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: CDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGGCTGATGAACAAAGTGTTTAGAGAGTTTTTAGACAACTTCATGATCGTCTTCATCGATGATATCCTGGTGTACTCCAAGACGGGGGAACAACACGAGGAACATCTCCGGAAAGTGCTGACCACTCCGAGAACGAACAAGTTGTTTGCAAAGTTCTCCAAGTGTGAATTCTGGGCAGAACAGGTGGGATTTCTTGGGCATGTAGTTTTAAGCATGGGAATCACCGTAGACCCAACAAAGATTGAAGCGGTGACGAATTGGCCTCGCCCGACCACAGTGACGGAAGTACGAAGTTTCCTTGGACTAGTAGGGTATTATCGGCGGTTTGTGCAGGATTTCGCGAAGATCGCCACCCCCCTCACTGAGTTAACCAAGAAAGGAAAGTCGTTCACCTGGAATGATCAGTGTGAGGTTAGTTTCAAAGAACTCAAACAGAGGTTAGTATCTGACGCGGTACTCACTATATCGTCAGGAGATGGAGGCTTTGTAGTATACAGCGATGCTTCAAAAAGGGGGTTAGGATGTGTCCTTATGCAACGTGGGAAGGTTATTGCCTATGTTTCACGTCAACTAAAAGAATACGAGCGAAACTATCCCACCCACGACCTAGAACTCGCAGCAGTGGTATTTGCATTGAAGATTTGGAGACACTACCTTTATAGAGAAAGGACCCAAATTTTCACTGACCACAAGAGCCTTAAATACTTCTTTACTCAGAAGGAGTTGAACGTGAGACAACGCAGGTGGTTGGAGTTGGTTAAAGATTATGATGTGGAGATACTCTATCACCCGGGAAAGGCGAATGTGGTAGCTGATGCGTTGAGCCAAAAATTAGCACACACGTCTGCCCTAATCACTACACAAAAAGCGATCCAGCAGGATCTAGAACGCGCCGAGGTAGCAGTGGCCATGGGGGAAGTCGCCGCTCAATTGGCCCAGTTAACGATACAACCAACCTTGAGGCAACGTCTTATTGATAAACAGCATGGTGATCCGGATTTGGTTGGAAAAAGACGTTTGATAGATGCTAATCAGACAGAGGAGTTTTCATTGACAGCTGATGGGGGGGCTCTTGTACCATGGGCGGTTGTGTGTGCCAAATGA

mRNA sequence

ATGGGGCTGATGAACAAAGTGTTTAGAGAGTTTTTAGACAACTTCATGATCGTCTTCATCGATGATATCCTGGTGTACTCCAAGACGGGGGAACAACACGAGGAACATCTCCGGAAAGTGCTGACCACTCCGAGAACGAACAAGTTGTTTGCAAAGTTCTCCAAGTGTGAATTCTGGGCAGAACAGGTGGGATTTCTTGGGCATGTAGTTTTAAGCATGGGAATCACCGTAGACCCAACAAAGATTGAAGCGGTGACGAATTGGCCTCGCCCGACCACAGTGACGGAAGTACGAAGTTTCCTTGGACTAGTAGGGTATTATCGGCGGTTTGTGCAGGATTTCGCGAAGATCGCCACCCCCCTCACTGAGTTAACCAAGAAAGGAAAGTCGTTCACCTGGAATGATCAGTGTGAGGTTAGTTTCAAAGAACTCAAACAGAGGTTAGTATCTGACGCGGTACTCACTATATCGTCAGGAGATGGAGGCTTTGTAGTATACAGCGATGCTTCAAAAAGGGGGTTAGGATGTGTCCTTATGCAACGTGGGAAGGTTATTGCCTATGTTTCACGTCAACTAAAAGAATACGAGCGAAACTATCCCACCCACGACCTAGAACTCGCAGCAGTGGTATTTGCATTGAAGATTTGGAGACACTACCTTTATAGAGAAAGGACCCAAATTTTCACTGACCACAAGAGCCTTAAATACTTCTTTACTCAGAAGGAGTTGAACGTGAGACAACGCAGGTGGTTGGAGTTGGTTAAAGATTATGATGTGGAGATACTCTATCACCCGGGAAAGGCGAATGTGGTAGCTGATGCGTTGAGCCAAAAATTAGCACACACGTCTGCCCTAATCACTACACAAAAAGCGATCCAGCAGGATCTAGAACGCGCCGAGGTAGCAGTGGCCATGGGGGAAGTCGCCGCTCAATTGGCCCAGTTAACGATACAACCAACCTTGAGGCAACGTCTTATTGATAAACAGCATGGTGATCCGGATTTGGTTGGAAAAAGACGTTTGATAGATGCTAATCAGACAGAGGAGTTTTCATTGACAGCTGATGGGGGGGCTCTTGTACCATGGGCGGTTGTGTGTGCCAAATGA

Coding sequence (CDS)

ATGGGGCTGATGAACAAAGTGTTTAGAGAGTTTTTAGACAACTTCATGATCGTCTTCATCGATGATATCCTGGTGTACTCCAAGACGGGGGAACAACACGAGGAACATCTCCGGAAAGTGCTGACCACTCCGAGAACGAACAAGTTGTTTGCAAAGTTCTCCAAGTGTGAATTCTGGGCAGAACAGGTGGGATTTCTTGGGCATGTAGTTTTAAGCATGGGAATCACCGTAGACCCAACAAAGATTGAAGCGGTGACGAATTGGCCTCGCCCGACCACAGTGACGGAAGTACGAAGTTTCCTTGGACTAGTAGGGTATTATCGGCGGTTTGTGCAGGATTTCGCGAAGATCGCCACCCCCCTCACTGAGTTAACCAAGAAAGGAAAGTCGTTCACCTGGAATGATCAGTGTGAGGTTAGTTTCAAAGAACTCAAACAGAGGTTAGTATCTGACGCGGTACTCACTATATCGTCAGGAGATGGAGGCTTTGTAGTATACAGCGATGCTTCAAAAAGGGGGTTAGGATGTGTCCTTATGCAACGTGGGAAGGTTATTGCCTATGTTTCACGTCAACTAAAAGAATACGAGCGAAACTATCCCACCCACGACCTAGAACTCGCAGCAGTGGTATTTGCATTGAAGATTTGGAGACACTACCTTTATAGAGAAAGGACCCAAATTTTCACTGACCACAAGAGCCTTAAATACTTCTTTACTCAGAAGGAGTTGAACGTGAGACAACGCAGGTGGTTGGAGTTGGTTAAAGATTATGATGTGGAGATACTCTATCACCCGGGAAAGGCGAATGTGGTAGCTGATGCGTTGAGCCAAAAATTAGCACACACGTCTGCCCTAATCACTACACAAAAAGCGATCCAGCAGGATCTAGAACGCGCCGAGGTAGCAGTGGCCATGGGGGAAGTCGCCGCTCAATTGGCCCAGTTAACGATACAACCAACCTTGAGGCAACGTCTTATTGATAAACAGCATGGTGATCCGGATTTGGTTGGAAAAAGACGTTTGATAGATGCTAATCAGACAGAGGAGTTTTCATTGACAGCTGATGGGGGGGCTCTTGTACCATGGGCGGTTGTGTGTGCCAAATGA
Homology
[Close]
BLAST of CmoCh13G003200 vs. Swiss-Prot
Match: POL3_DROME (Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 1.6e-53
Identity = 115/294 (39.12%), Postives = 173/294 (58.84%), Query Frame = 1 

Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           MN + R  L+   +V++DDI+V+S + ++H + L  V        L  +  KCEF  ++ 
Sbjct: 349 MNDILRPLLNKHCLVYLDDIIVFSTSLDEHLQSLGLVFEKLAKANLKLQLDKCEFLKQET 408

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            FLGHV+   GI  +P KIEA+  +P PT   E+++FLGL GYYR+F+ +FA IA P+T+
Sbjct: 409 TFLGHVLTPDGIKPNPEKIEAIQKYPIPTKPKEIKAFLGLTGYYRKFIPNFADIAKPMTK 468

Query: 124 LTKKG-KSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRG 183
             KK  K  T N + + +FK+LK  +  D +L +      F + +DAS   LG VL Q G
Sbjct: 469 CLKKNMKIDTTNPEYDSAFKKLKYLISEDPILKVPDFTKKFTLTTDASDVALGAVLSQDG 528

Query: 184 KVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQKE 243
             ++Y+SR L E+E NY T + EL A+V+A K +RHYL     +I +DH+ L + +  K+
Sbjct: 529 HPLSYISRTLNEHEINYSTIEKELLAIVWATKTFRHYLLGRHFEISSDHQPLSWLYRMKD 588

Query: 244 LNVRQRRWLELVKDYDVEILYHPGKANVVADALSQ-KLAHTSALITTQKAIQQD 296
            N +  RW   + ++D +I Y  GK N VADALS+ KL  T     TQ + ++D
Sbjct: 589 PNSKLTRWRVKLSEFDFDIKYIKGKENCVADALSRIKLEETYLSEQTQHSAEED 642

[Close]
BLAST of CmoCh13G003200 vs. Swiss-Prot
Match: POL2_DROME (Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 199.5 bits (506), Expect = 6.3e-50
Identity = 107/294 (36.39%), Postives = 171/294 (58.16%), Query Frame = 1 

Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           MN + R  L+   +V++DDI+++S +  +H   ++ V T      L  +  KCEF  ++ 
Sbjct: 348 MNNILRPLLNKHCLVYLDDIIIFSTSLTEHLNSIQLVFTKLADANLKLQLDKCEFLKKEA 407

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            FLGH+V   GI  +P K++A+ ++P PT   E+R+FLGL GYYR+F+ ++A IA P+T 
Sbjct: 408 NFLGHIVTPDGIKPNPIKVKAIVSYPIPTKDKEIRAFLGLTGYYRKFIPNYADIAKPMTS 467

Query: 124 -LTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRG 183
            L K+ K  T   +   +F++LK  ++ D +L +   +  FV+ +DAS   LG VL Q G
Sbjct: 468 CLKKRTKIDTQKLEYIEAFEKLKALIIRDPILQLPDFEKKFVLTTDASNLALGAVLSQNG 527

Query: 184 KVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQKE 243
             I+++SR L ++E NY   + EL A+V+A K +RHYL   +  I +DH+ L++    KE
Sbjct: 528 HPISFISRTLNDHELNYSAIEKELLAIVWATKTFRHYLLGRQFLIASDHQPLRWLHNLKE 587

Query: 244 LNVRQRRWLELVKDYDVEILYHPGKANVVADALSQ-KLAHTSALITTQKAIQQD 296
              +  RW   + +Y  +I Y  GK N VADALS+ K+        TQ + ++D
Sbjct: 588 PGAKLERWRVRLSEYQFKIDYIKGKENSVADALSRIKIEENHHSEATQHSAEED 641

[Close]
BLAST of CmoCh13G003200 vs. Swiss-Prot
Match: POL5_DROME (Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 198.0 bits (502), Expect = 1.8e-49
Identity = 113/309 (36.57%), Postives = 175/309 (56.63%), Query Frame = 1 

Query: 3   LMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQ 62
           +++ + RE +     V+IDDI+V+S+  + H ++LR VL +     L     K  F   Q
Sbjct: 264 MIDDILREHIGKVCYVYIDDIIVFSEDYDTHWKNLRLVLASLSKANLQVNLEKSHFLDTQ 323

Query: 63  VGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLT 122
           V FLG++V + GI  DP K+ A++  P PT+V E++ FLG+  YYR+F+QD+AK+A PLT
Sbjct: 324 VEFLGYIVTADGIKADPKKVRAISEMPPPTSVKELKRFLGMTSYYRKFIQDYAKVAKPLT 383

Query: 123 ELT-------KKGKS----FTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASK 182
            LT       K  +S     T ++    SF +LK  L S  +L        F + +DAS 
Sbjct: 384 NLTRGLYANIKSSQSSKVPITLDETALQSFNDLKSILCSSEILAFPCFTKPFHLTTDASN 443

Query: 183 RGLGCVLMQ----RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERT-Q 242
             +G VL Q    R + IAY+SR L + E NY T + E+ A++++L   R YLY   T +
Sbjct: 444 WAIGAVLSQDDQGRDRPIAYISRSLNKTEENYATIEKEMLAIIWSLDNLRAYLYGAGTIK 503

Query: 243 IFTDHKSLKYFFTQKELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALI 296
           ++TDH+ L +    +  N + +RW   +++Y+ E++Y PGK+NVVADALS+     + L 
Sbjct: 504 VYTDHQPLTFALGNRNFNAKLKRWKARIEEYNCELIYKPGKSNVVADALSRIPPQLNQLS 563

[Close]
BLAST of CmoCh13G003200 vs. Swiss-Prot
Match: POLY_DROME (Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogaster GN=pol PE=3 SV=1)

HSP 1 Score: 183.7 bits (465), Expect = 3.6e-45
Identity = 101/288 (35.07%), Postives = 158/288 (54.86%), Query Frame = 1 

Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           ++ V RE +     V++DD++++S+    H  H+  VL       +     K  F+ E V
Sbjct: 324 LDDVLREQIGKICYVYVDDVIIFSENESDHVRHIDTVLKCLIDANMRVSQEKTRFFKESV 383

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            +LG +V   G   DP K++A+  +P P  V +VRSFLGL  YYR F++DFA IA P+T+
Sbjct: 384 EYLGFIVSKDGTKSDPEKVKAIQEYPEPDCVYKVRSFLGLASYYRVFIKDFAAIARPITD 443

Query: 124 LTK-----------KGKSFTWNDQCEVSFKELKQRLVS-DAVLTISSGDGGFVVYSDASK 183
           + K           K     +N+    +F+ L+  L S D +L        F + +DAS 
Sbjct: 444 ILKGENGSVSKHMSKKIPVEFNETQRNAFQRLRNILASEDVILKYPDFKKPFDLTTDASA 503

Query: 184 RGLGCVLMQRGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRER-TQIFTD 243
            G+G VL Q G+ I  +SR LK+ E+NY T++ EL A+V+AL   +++LY  R   IFTD
Sbjct: 504 SGIGAVLSQEGRPITMISRTLKQPEQNYATNERELLAIVWALGKLQNFLYGSREINIFTD 563

Query: 244 HKSLKYFFTQKELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQK 279
           H+ L +    +  N + +RW   +  ++ ++ Y PGK N VADALS++
Sbjct: 564 HQPLTFAVADRNTNAKIKRWKSYIDQHNAKVFYKPGKENFVADALSRQ 611

[Close]
BLAST of CmoCh13G003200 vs. Swiss-Prot
Match: TF212_SCHPO (Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-12 PE=3 SV=1)

HSP 1 Score: 164.5 bits (415), Expect = 2.2e-39
Identity = 95/291 (32.65%), Postives = 153/291 (52.58%), Query Frame = 1 

Query: 4   MNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWAEQV 63
           +N +  E  ++ ++ ++DDIL++SK+  +H +H++ VL   +   L    +KCEF   QV
Sbjct: 549 INTILGEAKESHVVCYMDDILIHSKSESEHVKHVKDVLQKLKNANLIINQAKCEFHQSQV 608

Query: 64  GFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATPLTE 123
            F+G+ +   G T     I+ V  W +P    E+R FLG V Y R+F+   +++  PL  
Sbjct: 609 KFIGYHISEKGFTPCQENIDKVLQWKQPKNRKELRQFLGSVNYLRKFIPKTSQLTHPLNN 668

Query: 124 LTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQRGK 183
           L KK   + W      + + +KQ LVS  VL         ++ +DAS   +G VL Q+  
Sbjct: 669 LLKKDVRWKWTPTQTQAIENIKQCLVSPPVLRHFDFSKKILLETDASDVAVGAVLSQKHD 728

Query: 184 -----VIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYR--ERTQIFTDHKSLKY 243
                 + Y S ++ + + NY   D E+ A++ +LK WRHYL    E  +I TDH++L  
Sbjct: 729 DDKYYPVGYYSAKMSKAQLNYSVSDKEMLAIIKSLKHWRHYLESTIEPFKILTDHRNLIG 788

Query: 244 FFTQKE--LNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSAL 286
             T +    N R  RW   ++D++ EI Y PG AN +ADALS+ +  T  +
Sbjct: 789 RITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPI 839

[Close]
BLAST of CmoCh13G003200 vs. TrEMBL
Match: Q84KB0_CUCME (Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1)

HSP 1 Score: 542.0 bits (1395), Expect = 5.8e-151
Identity = 263/359 (73.26%), Postives = 306/359 (85.24%), Query Frame = 1 

Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 186

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 187 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 247 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ 306

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 307 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 366

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 367 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 426

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV +G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT EFSL++DGG L
Sbjct: 427 IAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLL 485

[Close]
BLAST of CmoCh13G003200 vs. TrEMBL
Match: O64892_ANACO (Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1)

HSP 1 Score: 440.3 bits (1131), Expect = 2.4e-120
Identity = 217/358 (60.61%), Postives = 269/358 (75.14%), Query Frame = 1 

Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VF+ +LD F++VFIDDILVYS++   HEEHLR VL   R  +L+ K  KCEFW 
Sbjct: 151 MDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEFWL 210

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +V FLGH++   GI VDP KIEA+ +WPR T+VTE+RSFLGL GYYRRFV+ FAK++TP
Sbjct: 211 REVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSVTEIRSFLGLAGYYRRFVERFAKLSTP 270

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT LT KG  F WND CE SF+ELKQRL +  +LT+     G+VVYSDAS  GLGCVLMQ
Sbjct: 271 LTRLTHKGVKFIWNDACERSFQELKQRLTTAPILTLPVAGAGYVVYSDASLNGLGCVLMQ 330

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             KVIAY SRQLKEYE+NYPTHDLELAAVVFALK+WRHYLY ER +++TDHKSLKY FTQ
Sbjct: 331 DDKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQ 390

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSAL-ITTQKAIQQDLERA 300
           KELN+RQRRWLEL+KDYD+ ILYHPGKANVVADALS+K     A+ + TQ  + + ++R 
Sbjct: 391 KELNLRQRRWLELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRL 450

Query: 301 EVAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVG-KRRLIDANQTEEFSLTADG 357
           E+ +   +   +L  L +QPTL  R+ +KQ  D +L   K +++D   T +F+L  DG
Sbjct: 451 ELEIVTPDTPMRLMTLVVQPTLLDRIKEKQASDVELQKIKGKMVD-GCTGDFTLDGDG 507

[Close]
BLAST of CmoCh13G003200 vs. TrEMBL
Match: G9FIF2_BETVU (Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 431.8 bits (1109), Expect = 8.4e-118
Identity = 210/357 (58.82%), Postives = 264/357 (73.95%), Query Frame = 1 

Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN++FR +LD F++VFIDDIL+YSK  E+HE+HLR +L T R N+L+AKFSKCEFW 
Sbjct: 726  MDLMNRIFRPYLDKFVVVFIDDILIYSKNKEEHEDHLRVILQTLRDNQLYAKFSKCEFWL 785

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            E+V FLGH +   G+ VDP KI+AV+ WP P  VT++RSFLGL GYYRRFV+DF+KIA P
Sbjct: 786  ERVSFLGHFISKEGVLVDPAKIKAVSEWPTPKNVTDIRSFLGLAGYYRRFVKDFSKIAKP 845

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            +T L KK   FTWN+  E +F+ LK+RL S  VLT+ +G+ G+ VYSDASK GLGCVLMQ
Sbjct: 846  MTNLMKKDCRFTWNEDSEKAFQTLKERLTSAPVLTLPNGNEGYDVYSDASKNGLGCVLMQ 905

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             GKVIAY SRQLK YE NYPTHDLELAA+VFALKIWRHYLY    +IFTDHKSLKY FTQ
Sbjct: 906  NGKVIAYASRQLKPYEVNYPTHDLELAAIVFALKIWRHYLYGVTCRIFTDHKSLKYIFTQ 965

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            K+LN+RQRRWLEL+KDYD++I YH GKANVVADALS+K +H+   +     + ++  R +
Sbjct: 966  KDLNMRQRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSLNTLVVADKLCEEFSRLQ 1025

Query: 301  VAVA-MGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADG 357
            + V   GEV   L+ LTI+P   + +   Q GD  L   +  +   + E F++  DG
Sbjct: 1026 IEVVHEGEVERLLSALTIEPNFLEEIRASQPGDVKLERVKAKLKEGKAEGFAIHEDG 1082

[Close]
BLAST of CmoCh13G003200 vs. TrEMBL
Match: M5VK25_PRUPE (Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1)

HSP 1 Score: 421.8 bits (1083), Expect = 8.7e-115
Identity = 210/357 (58.82%), Postives = 269/357 (75.35%), Query Frame = 1 

Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VFR +LD+F+IVFIDDILVYS+T E H++HLR VL T R  +L+AKFSKC+FW 
Sbjct: 697  MDLMNRVFRPYLDHFVIVFIDDILVYSQTLEGHKKHLRVVLRTLRRKQLYAKFSKCQFWL 756

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            + V FLGHV+ + GI VDP K+EA+ NW + T+VTE+RSFLGL GYYRRFV+ F+ IA P
Sbjct: 757  DIVVFLGHVISAEGIYVDPQKVEAIVNWVQSTSVTEIRSFLGLAGYYRRFVEGFSSIAAP 816

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT LT+K  +F W ++CE SF+ELK+RL +  VL +    G FV+YSDAS +GLGCVLMQ
Sbjct: 817  LTRLTRKDIAFEWTEECEQSFQELKKRLTTAPVLALPDNAGNFVIYSDASLQGLGCVLMQ 876

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
              +VIAY SRQLK++E+NYP HDLELAAVVFALKIWRHYLY E  QIFTDHKSLKYFFTQ
Sbjct: 877  HDRVIAYASRQLKKHEQNYPVHDLELAAVVFALKIWRHYLYGETCQIFTDHKSLKYFFTQ 936

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHT-SALITTQKAIQQDLERA 300
            +ELN+RQRRWLEL+KDYD  I Y+PG+ANVVADALS+K   + + L TT   +  +L + 
Sbjct: 937  RELNMRQRRWLELIKDYDCTIEYYPGRANVVADALSRKTTGSLTHLRTTYLPLLVELRKD 996

Query: 301  EVAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADG 357
             V + M +    LA L ++P L +R+I  Q GDP L   R  +++   +++++  DG
Sbjct: 997  GVELEMTQQGGILASLHVRPILVERIIVAQLGDPTLCRIRGEVESGSRKDYAIRGDG 1053

[Close]
BLAST of CmoCh13G003200 vs. TrEMBL
Match: A2I5E5_BETVU (Retrotransposon protein OS=Beta vulgaris PE=4 SV=1)

HSP 1 Score: 419.1 bits (1076), Expect = 5.6e-114
Identity = 204/357 (57.14%), Postives = 265/357 (74.23%), Query Frame = 1 

Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN++F EFLD F++VFIDDIL+YS+   +H+EHLR +L T R N+L+AKFSKCEF  
Sbjct: 694  MDLMNRIFHEFLDKFVVVFIDDILIYSRNETEHDEHLRIILETLRKNQLYAKFSKCEFRL 753

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            E+V FLGH V   G++VDP KI+AV+ WP P +VT++RSFLGL GYYRRFV+DF+KIA P
Sbjct: 754  EKVAFLGHFVSKEGVSVDPAKIQAVSEWPTPKSVTDIRSFLGLAGYYRRFVRDFSKIARP 813

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            +T L KK   F WN++CE +F+ LK RL +  VLT+  G+ GF VYSDASK GLGCVL Q
Sbjct: 814  MTNLMKKETKFEWNEKCEEAFQILKDRLTTAPVLTLPDGNEGFEVYSDASKNGLGCVLQQ 873

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             GKVIAY S QLK YE NYPTHDLELAA+VFALKIWRHYLY    +IFTDHKSLKY FTQ
Sbjct: 874  NGKVIAYASCQLKPYEANYPTHDLELAAIVFALKIWRHYLYGATCKIFTDHKSLKYIFTQ 933

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            K+LN+RQRRWLEL+KDYD++I YH GKANVVADALS+K +H+ + +   + + +D++R  
Sbjct: 934  KDLNMRQRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSLSTLIVPEELCRDMKRLN 993

Query: 301  VAVA-MGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADG 357
            + +   GE  A+L+ L++  ++   +I+ Q GD  L   +  +   +  +F +  DG
Sbjct: 994  LEILNPGESEARLSNLSLGVSIFDEIIEGQVGDEHLDKIKEKMKQGKEIDFKIHEDG 1050

[Close]
BLAST of CmoCh13G003200 vs. TAIR10
Match: ATMG00860.1 (ATMG00860.1 DNA/RNA polymerases superfamily protein)

HSP 1 Score: 109.0 bits (271), Expect = 6.3e-24
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 1 

Query: 36  HLRKVLTTPRTNKLFAKFSKCEFWAEQVGFLGH--VVLSMGITVDPTKIEAVTNWPRPTT 95
           HL  VL     ++ +A   KC F   Q+ +LGH  ++   G++ DP K+EA+  WP P  
Sbjct: 3   HLGMVLQIWEQHQFYANRKKCAFGQPQIAYLGHRHIISGEGVSADPAKLEAMVGWPEPKN 62

Query: 96  VTEVRSFLGLVGYYRRFVQDFAKIATPLTELTKKGKSFTWNDQCEVSFKELKQRLVSDAV 155
            TE+R FLGL GYYRRFV+++ KI  PLTEL KK  S  W +   ++FK LK  + +  V
Sbjct: 63  TTELRGFLGLTGYYRRFVKNYGKIVRPLTELLKK-NSLKWTEMAALAFKALKGAVTTLPV 122

Query: 156 LTI 157
           L +
Sbjct: 123 LAL 124

[Close]
BLAST of CmoCh13G003200 vs. NCBI nr
Match: gi|28558781|gb|AAO45752.1| (pol protein [Cucumis melo subsp. melo])

HSP 1 Score: 542.0 bits (1395), Expect = 8.3e-151
Identity = 263/359 (73.26%), Postives = 306/359 (85.24%), Query Frame = 1 

Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VFREFLD F+IVFIDDIL+YSKT  +HEEHLR VL T R NKL+AKFSKCEFW 
Sbjct: 127 MDLMNRVFREFLDTFVIVFIDDILIYSKTEAEHEEHLRMVLQTLRDNKLYAKFSKCEFWL 186

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
           +QV FLGHVV   G++VDP KIEAVT W RP+TV+EVRSFLGL GYYRRFV++F++IATP
Sbjct: 187 KQVSFLGHVVSKAGVSVDPAKIEAVTGWTRPSTVSEVRSFLGLAGYYRRFVENFSRIATP 246

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT+LT+KG  F W+  CE SF+ LKQ+LV+  VLT+  G G FV+YSDASK+GLGCVLMQ
Sbjct: 247 LTQLTRKGAPFVWSKACEDSFQTLKQKLVTAPVLTVPDGSGNFVIYSDASKKGLGCVLMQ 306

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
           +GKV+AY SRQLK +E+NYPTHDLELAAVVFALKIWRHYLY E+ QIFTDHKSLKYFFTQ
Sbjct: 307 QGKVVAYASRQLKSHEQNYPTHDLELAAVVFALKIWRHYLYGEKIQIFTDHKSLKYFFTQ 366

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
           KELN+RQRRWLELVKDYD EILYHPGKANVVADALS+K++H++ALIT Q  + +DLERAE
Sbjct: 367 KELNMRQRRWLELVKDYDCEILYHPGKANVVADALSRKVSHSAALITRQAPLHRDLERAE 426

Query: 301 VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADGGAL 360
           +AV +G V  QLAQLT+QPTLRQR+ID Q  DP LV KR L +A QT EFSL++DGG L
Sbjct: 427 IAVLVGAVTMQLAQLTVQPTLRQRIIDAQSNDPYLVEKRGLAEAGQTAEFSLSSDGGLL 485

[Close]
BLAST of CmoCh13G003200 vs. NCBI nr
Match: gi|2995405|emb|CAA73042.1| (polyprotein [Ananas comosus])

HSP 1 Score: 440.3 bits (1131), Expect = 3.4e-120
Identity = 217/358 (60.61%), Postives = 269/358 (75.14%), Query Frame = 1 

Query: 1   MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
           M LMN+VF+ +LD F++VFIDDILVYS++   HEEHLR VL   R  +L+ K  KCEFW 
Sbjct: 151 MDLMNRVFKPYLDRFVVVFIDDILVYSRSDADHEEHLRIVLQVLREKELYVKLKKCEFWL 210

Query: 61  EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            +V FLGH++   GI VDP KIEA+ +WPR T+VTE+RSFLGL GYYRRFV+ FAK++TP
Sbjct: 211 REVAFLGHLISGSGIAVDPKKIEAIKDWPRLTSVTEIRSFLGLAGYYRRFVERFAKLSTP 270

Query: 121 LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
           LT LT KG  F WND CE SF+ELKQRL +  +LT+     G+VVYSDAS  GLGCVLMQ
Sbjct: 271 LTRLTHKGVKFIWNDACERSFQELKQRLTTAPILTLPVAGAGYVVYSDASLNGLGCVLMQ 330

Query: 181 RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             KVIAY SRQLKEYE+NYPTHDLELAAVVFALK+WRHYLY ER +++TDHKSLKY FTQ
Sbjct: 331 DDKVIAYASRQLKEYEKNYPTHDLELAAVVFALKLWRHYLYGERCEVYTDHKSLKYLFTQ 390

Query: 241 KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSAL-ITTQKAIQQDLERA 300
           KELN+RQRRWLEL+KDYD+ ILYHPGKANVVADALS+K     A+ + TQ  + + ++R 
Sbjct: 391 KELNLRQRRWLELLKDYDLTILYHPGKANVVADALSRKSMENLAMHVVTQPRLIEQMKRL 450

Query: 301 EVAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVG-KRRLIDANQTEEFSLTADG 357
           E+ +   +   +L  L +QPTL  R+ +KQ  D +L   K +++D   T +F+L  DG
Sbjct: 451 ELEIVTPDTPMRLMTLVVQPTLLDRIKEKQASDVELQKIKGKMVD-GCTGDFTLDGDG 507

[Close]
BLAST of CmoCh13G003200 vs. NCBI nr
Match: gi|359372825|gb|AEV42258.1| (hypothetical protein [Beta vulgaris])

HSP 1 Score: 431.8 bits (1109), Expect = 1.2e-117
Identity = 210/357 (58.82%), Postives = 264/357 (73.95%), Query Frame = 1 

Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN++FR +LD F++VFIDDIL+YSK  E+HE+HLR +L T R N+L+AKFSKCEFW 
Sbjct: 726  MDLMNRIFRPYLDKFVVVFIDDILIYSKNKEEHEDHLRVILQTLRDNQLYAKFSKCEFWL 785

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            E+V FLGH +   G+ VDP KI+AV+ WP P  VT++RSFLGL GYYRRFV+DF+KIA P
Sbjct: 786  ERVSFLGHFISKEGVLVDPAKIKAVSEWPTPKNVTDIRSFLGLAGYYRRFVKDFSKIAKP 845

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            +T L KK   FTWN+  E +F+ LK+RL S  VLT+ +G+ G+ VYSDASK GLGCVLMQ
Sbjct: 846  MTNLMKKDCRFTWNEDSEKAFQTLKERLTSAPVLTLPNGNEGYDVYSDASKNGLGCVLMQ 905

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             GKVIAY SRQLK YE NYPTHDLELAA+VFALKIWRHYLY    +IFTDHKSLKY FTQ
Sbjct: 906  NGKVIAYASRQLKPYEVNYPTHDLELAAIVFALKIWRHYLYGVTCRIFTDHKSLKYIFTQ 965

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            K+LN+RQRRWLEL+KDYD++I YH GKANVVADALS+K +H+   +     + ++  R +
Sbjct: 966  KDLNMRQRRWLELIKDYDLDIQYHEGKANVVADALSRKSSHSLNTLVVADKLCEEFSRLQ 1025

Query: 301  VAVA-MGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADG 357
            + V   GEV   L+ LTI+P   + +   Q GD  L   +  +   + E F++  DG
Sbjct: 1026 IEVVHEGEVERLLSALTIEPNFLEEIRASQPGDVKLERVKAKLKEGKAEGFAIHEDG 1082

[Close]
BLAST of CmoCh13G003200 vs. NCBI nr
Match: gi|702455653|ref|XP_010026793.1| (PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis])

HSP 1 Score: 427.9 bits (1099), Expect = 1.7e-116
Identity = 211/367 (57.49%), Postives = 275/367 (74.93%), Query Frame = 1 

Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+VF+E+LD F+IVFIDDILVYS++ E HE+HLR VL T R ++L+AKFSKCEFW 
Sbjct: 701  MDLMNRVFKEYLDQFVIVFIDDILVYSRSSEDHEKHLRIVLQTLRDHELYAKFSKCEFWL 760

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
             +V FLGHV+   GI+VDP KIEAV NWPRPTTVTE+RSFLGL GYYRRFV+ F+++A+P
Sbjct: 761  TRVAFLGHVISGEGISVDPAKIEAVINWPRPTTVTEIRSFLGLAGYYRRFVEGFSRLASP 820

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            +T L KK + F W D+CE SF+ELK +L +  VLTI SG GGF +YSDAS +GLGCVLMQ
Sbjct: 821  MTRLLKKEEKFVWTDKCENSFQELKHKLTTAPVLTIPSGPGGFEIYSDASFKGLGCVLMQ 880

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             G+V+AY SRQL+ +E NYPTHDLELAA++FALKIWRHYL  ER QIFTDH+SLKY F+Q
Sbjct: 881  HGRVVAYASRQLRLHELNYPTHDLELAAIIFALKIWRHYLCGERFQIFTDHQSLKYLFSQ 940

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRW+EL+KDYD EILYHPGKAN VADALS+K +  + ++  +  + +    ++
Sbjct: 941  KELNMRQRRWMELLKDYDCEILYHPGKANKVADALSRK-SSVAQMVLKEWGLIERARDSD 1000

Query: 301  VAVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLV------GKRRLIDANQTEEFSLTA 360
                +G ++  +A L I+P ++ ++   Q  D D+        ++R  D   +E+ +L  
Sbjct: 1001 FKFEVGHLSNLVATLRIEPEVQVKIRTLQQMDSDVQKILQEDAEKRKADFQISEDGTLRF 1060

Query: 361  DGGALVP 362
             G  +VP
Sbjct: 1061 QGRLVVP 1066

[Close]
BLAST of CmoCh13G003200 vs. NCBI nr
Match: gi|731318723|ref|XP_010669881.1| (PREDICTED: uncharacterized protein LOC104887001 [Beta vulgaris subsp. vulgaris])

HSP 1 Score: 422.9 bits (1086), Expect = 5.6e-115
Identity = 203/357 (56.86%), Postives = 265/357 (74.23%), Query Frame = 1 

Query: 1    MGLMNKVFREFLDNFMIVFIDDILVYSKTGEQHEEHLRKVLTTPRTNKLFAKFSKCEFWA 60
            M LMN+ F+++LD  +++FIDDILV+S+  E+HE HLR +L   R  KL+ KFSKCEFW 
Sbjct: 703  MDLMNRTFKQYLDKCVVIFIDDILVFSRDKEEHEAHLRIILEILRQEKLYGKFSKCEFWL 762

Query: 61   EQVGFLGHVVLSMGITVDPTKIEAVTNWPRPTTVTEVRSFLGLVGYYRRFVQDFAKIATP 120
            E+V FLGHV+   G+ VDP+KI+AVT+W RPT+VTE+RSFLGL GYYRRFV+DF+K+A P
Sbjct: 763  EKVAFLGHVISKDGVAVDPSKIQAVTDWARPTSVTEIRSFLGLAGYYRRFVRDFSKVAQP 822

Query: 121  LTELTKKGKSFTWNDQCEVSFKELKQRLVSDAVLTISSGDGGFVVYSDASKRGLGCVLMQ 180
            LT L KK   F W+DQCE +F+ELK+RL +  VLT+  G  GF V+SDASK GLGCVLMQ
Sbjct: 823  LTNLMKKATKFHWDDQCESAFQELKKRLTTTPVLTLPCGTEGFEVFSDASKHGLGCVLMQ 882

Query: 181  RGKVIAYVSRQLKEYERNYPTHDLELAAVVFALKIWRHYLYRERTQIFTDHKSLKYFFTQ 240
             GKV+AY SRQLK YE+NYPTHDLEL A+VFALKIWRHYLY  +  ++T+HKSLKY +TQ
Sbjct: 883  HGKVVAYASRQLKPYEQNYPTHDLELGAIVFALKIWRHYLYGVKCIMYTNHKSLKYLYTQ 942

Query: 241  KELNVRQRRWLELVKDYDVEILYHPGKANVVADALSQKLAHTSALITTQKAIQQDLERAE 300
            KELN+RQRRWLEL+ DYD++I+YH GKAN VADALS+K +HT  ++     + +D  +  
Sbjct: 943  KELNMRQRRWLELINDYDLDIVYHEGKANKVADALSRKSSHTLQVLILADELCKDFHKLN 1002

Query: 301  V-AVAMGEVAAQLAQLTIQPTLRQRLIDKQHGDPDLVGKRRLIDANQTEEFSLTADG 357
            +  V  G V A+L  + ++P L + +  KQ  D  L+  R++ +  Q  EF + A G
Sbjct: 1003 LEVVEHGYVEARLNVVYVEPNLFKEIQTKQSTDDWLIKLRKMKEEGQAPEFEVNAKG 1059

The following BLAST results are available for this feature:
BLAST of CmoCh13G003200 vs. Swiss-Prot
Match NameE-valueIdentityDescription
POL3_DROME1.6e-5339.12Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogast... [more]
POL2_DROME6.3e-5036.39Retrovirus-related Pol polyprotein from transposon 297 OS=Drosophila melanogaste... [more]
POL5_DROME1.8e-4936.57Retrovirus-related Pol polyprotein from transposon opus OS=Drosophila melanogast... [more]
POLY_DROME3.6e-4535.07Retrovirus-related Pol polyprotein from transposon gypsy OS=Drosophila melanogas... [more]
TF212_SCHPO2.2e-3932.65Transposon Tf2-12 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24... [more]
BLAST of CmoCh13G003200 vs. TrEMBL
Match NameE-valueIdentityDescription
Q84KB0_CUCME5.8e-15173.26Pol protein OS=Cucumis melo subsp. melo PE=4 SV=1[more]
O64892_ANACO2.4e-12060.61Polyprotein (Fragment) OS=Ananas comosus PE=4 SV=1[more]
G9FIF2_BETVU8.4e-11858.82Putative uncharacterized protein OS=Beta vulgaris PE=4 SV=1[more]
M5VK25_PRUPE8.7e-11558.82Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1[more]
A2I5E5_BETVU5.6e-11457.14Retrotransposon protein OS=Beta vulgaris PE=4 SV=1[more]
BLAST of CmoCh13G003200 vs. TAIR10
Match NameE-valueIdentityDescription
ATMG00860.16.3e-2442.28ATMG00860.1 DNA/RNA polymerases superfamily protein[more]
BLAST of CmoCh13G003200 vs. NCBI nr
Match NameE-valueIdentityDescription
gi|28558781|gb|AAO45752.1|8.3e-15173.26pol protein [Cucumis melo subsp. melo][more]
gi|2995405|emb|CAA73042.1|3.4e-12060.61polyprotein [Ananas comosus][more]
gi|359372825|gb|AEV42258.1|1.2e-11758.82hypothetical protein [Beta vulgaris][more]
gi|702455653|ref|XP_010026793.1|1.7e-11657.49PREDICTED: uncharacterized protein LOC104417177 [Eucalyptus grandis][more]
gi|731318723|ref|XP_010669881.1|5.6e-11556.86PREDICTED: uncharacterized protein LOC104887001 [Beta vulgaris subsp. vulgaris][more]
Annotated Terms
The following terms have been associated with this gene:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
IPR012337RNaseH-like_sf
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015074 DNA integration
cellular_component GO:0005575 cellular_component
molecular_function GO:0003824 catalytic activity
molecular_function GO:0003676 nucleic acid binding
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
CmoCh13G003200.1CmoCh13G003200.1mRNA


InterPro
Analysis Name: InterPro Annotations of Cucurbita moschata
Date Performed: 2017-05-19
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR000477Reverse transcriptase domainPFAMPF00078RVT_1coord: 3..69
score: 7.7
IPR012337Ribonuclease H-like domainGENE3DG3DSA:3.30.420.10coord: 161..255
score: 1.
NoneNo IPR availableGENE3DG3DSA:3.30.70.270coord: 4..69
score: 3.
NoneNo IPR availablePANTHERPTHR24559FAMILY NOT NAMEDcoord: 303..355
score: 4.7E-169coord: 1..279
score: 4.7E
NoneNo IPR availablePANTHERPTHR24559:SF207SUBFAMILY NOT NAMEDcoord: 303..355
score: 4.7E-169coord: 1..279
score: 4.7E
NoneNo IPR availableunknownSSF56672DNA/RNA polymerasescoord: 2..263
score: 9.64

Synteny
The following gene(s) are orthologous to this gene:

None

The following gene(s) are paralogous to this gene:

None

The following block(s) are covering this gene:
GeneOrganismBlock
CmoCh13G003200Watermelon (97103) v2cmowmbB198
CmoCh13G003200Wax gourdcmowgoB0259
CmoCh13G003200Cucurbita moschata (Rifu)cmocmoB135
CmoCh13G003200Cucumber (Gy14) v1cgycmoB0594
CmoCh13G003200Cucurbita maxima (Rimu)cmacmoB218
CmoCh13G003200Wild cucumber (PI 183967)cmocpiB192
CmoCh13G003200Cucumber (Chinese Long) v2cmocuB188
CmoCh13G003200Watermelon (Charleston Gray)cmowcgB179
CmoCh13G003200Cucurbita pepo (Zucchini)cmocpeB204
CmoCh13G003200Cucumber (Gy14) v2cgybcmoB057
CmoCh13G003200Melon (DHL92) v3.6.1cmomedB203
CmoCh13G003200Cucumber (Chinese Long) v3cmocucB0221